data_7K1H # _model_server_result.job_id M5NkGBmu6xgXNI2tymYmlA _model_server_result.datetime_utc '2024-10-19 05:26:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k1h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1301}' # _entry.id 7K1H # _exptl.entry_id 7K1H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 556.65 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{6-[4-(1-methylpiperidin-4-yl)phenyl]-1-oxo-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 118.25 _cell.angle_beta 87.05 _cell.angle_gamma 106.71 _cell.entry_id 7K1H _cell.length_a 66.848 _cell.length_b 88.336 _cell.length_c 93.841 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K1H _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,S,T 1 1 C,F,K,L,Q,R,U,X 2 1 D,E,M,N,O,P,V,W 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 106 A CYS 797 1_555 J C9 YY3 . A YY3 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.558 ? covale ? covale2 C SG CYS 106 C CYS 797 1_555 L C9 YY3 . C YY3 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.625 ? # _chem_comp.formula 'C31 H29 F N4 O3 S' _chem_comp.formula_weight 556.65 _chem_comp.id VNS _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{6-[4-(1-methylpiperidin-4-yl)phenyl]-1-oxo-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 N22 VNS sing 376 n n C24 C25 VNS sing 377 n n N22 C23 VNS sing 378 n n N22 C21 VNS sing 379 n n C25 C19 VNS sing 380 n n C21 C20 VNS sing 381 n n C19 C20 VNS sing 382 n n C19 C18 VNS sing 383 n n C18 C26 VNS doub 384 n y C18 C17 VNS sing 385 n y C26 C27 VNS sing 386 n y C17 C16 VNS doub 387 n y C27 C15 VNS doub 388 n y C16 C15 VNS sing 389 n y C15 C14 VNS sing 390 n n C14 C13 VNS doub 391 n y C14 C28 VNS sing 392 n y C13 C12 VNS sing 393 n y C28 C29 VNS doub 394 n y O32 C11 VNS doub 395 n n C12 C11 VNS sing 396 n n C12 C30 VNS doub 397 n y C11 N10 VNS sing 398 n n C29 C30 VNS sing 399 n y O40 C39 VNS sing 400 n n C30 C31 VNS sing 401 n n N10 C31 VNS sing 402 n n N10 C09 VNS sing 403 n n C39 C38 VNS doub 404 n y C39 C33 VNS sing 405 n y C09 C33 VNS sing 406 n n C09 C02 VNS sing 407 n n C38 C37 VNS sing 408 n y C33 C34 VNS doub 409 n y C02 N03 VNS sing 410 n n C02 O01 VNS doub 411 n n N03 C04 VNS sing 412 n n C37 C35 VNS doub 413 n y C34 C35 VNS sing 414 n y C04 N05 VNS doub 415 n y C04 S08 VNS sing 416 n y C35 F36 VNS sing 417 n n N05 C06 VNS sing 418 n y S08 C07 VNS sing 419 n y C06 C07 VNS doub 420 n y C06 H1 VNS sing 421 n n C07 H2 VNS sing 422 n n C09 H3 VNS sing 423 n n C13 H4 VNS sing 424 n n C16 H5 VNS sing 425 n n C19 H6 VNS sing 426 n n C20 H7 VNS sing 427 n n C20 H8 VNS sing 428 n n C21 H9 VNS sing 429 n n C21 H10 VNS sing 430 n n C23 H11 VNS sing 431 n n C23 H12 VNS sing 432 n n C23 H13 VNS sing 433 n n C24 H14 VNS sing 434 n n C24 H15 VNS sing 435 n n C25 H16 VNS sing 436 n n C25 H17 VNS sing 437 n n C17 H18 VNS sing 438 n n C26 H19 VNS sing 439 n n C27 H20 VNS sing 440 n n C28 H21 VNS sing 441 n n C29 H22 VNS sing 442 n n C31 H23 VNS sing 443 n n C31 H24 VNS sing 444 n n C34 H25 VNS sing 445 n n C37 H26 VNS sing 446 n n C38 H27 VNS sing 447 n n N03 H28 VNS sing 448 n n O40 H30 VNS sing 449 n n # _atom_sites.entry_id 7K1H _atom_sites.fract_transf_matrix[1][1] 0.014959 _atom_sites.fract_transf_matrix[1][2] 0.00449 _atom_sites.fract_transf_matrix[1][3] 0.001573 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011819 _atom_sites.fract_transf_matrix[2][3] 0.006456 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012158 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 VNS B 1 1301 1301 VNS J63 . H 3 YY3 B 1 1302 1401 YY3 YY3 . I 2 VNS A 1 1301 1301 VNS J63 . J 3 YY3 A 1 1302 1401 YY3 YY3 . K 2 VNS C 1 1301 1301 VNS J63 . L 3 YY3 C 1 1302 1401 YY3 YY3 . M 2 VNS D 1 1301 1301 VNS J63 . N 3 YY3 D 1 1302 1401 YY3 YY3 . O 2 VNS E 1 1301 1301 VNS J63 . P 3 YY3 E 1 1302 1401 YY3 YY3 . Q 2 VNS F 1 1301 1301 VNS J63 . R 3 YY3 F 1 1302 1401 YY3 YY3 . S 4 HOH B 1 1401 3 HOH HOH . S 4 HOH B 2 1402 29 HOH HOH . S 4 HOH B 3 1403 1 HOH HOH . S 4 HOH B 4 1404 34 HOH HOH . S 4 HOH B 5 1405 80 HOH HOH . S 4 HOH B 6 1406 94 HOH HOH . S 4 HOH B 7 1407 6 HOH HOH . S 4 HOH B 8 1408 68 HOH HOH . S 4 HOH B 9 1409 66 HOH HOH . S 4 HOH B 10 1410 108 HOH HOH . S 4 HOH B 11 1411 50 HOH HOH . S 4 HOH B 12 1412 87 HOH HOH . S 4 HOH B 13 1413 83 HOH HOH . S 4 HOH B 14 1414 40 HOH HOH . S 4 HOH B 15 1415 78 HOH HOH . S 4 HOH B 16 1416 5 HOH HOH . S 4 HOH B 17 1417 39 HOH HOH . T 4 HOH A 1 1401 59 HOH HOH . T 4 HOH A 2 1402 69 HOH HOH . T 4 HOH A 3 1403 58 HOH HOH . T 4 HOH A 4 1404 38 HOH HOH . T 4 HOH A 5 1405 101 HOH HOH . T 4 HOH A 6 1406 13 HOH HOH . T 4 HOH A 7 1407 56 HOH HOH . T 4 HOH A 8 1408 44 HOH HOH . T 4 HOH A 9 1409 27 HOH HOH . T 4 HOH A 10 1410 12 HOH HOH . T 4 HOH A 11 1411 85 HOH HOH . T 4 HOH A 12 1412 16 HOH HOH . T 4 HOH A 13 1413 55 HOH HOH . T 4 HOH A 14 1414 105 HOH HOH . T 4 HOH A 15 1415 75 HOH HOH . T 4 HOH A 16 1416 98 HOH HOH . T 4 HOH A 17 1417 92 HOH HOH . T 4 HOH A 18 1418 4 HOH HOH . T 4 HOH A 19 1419 88 HOH HOH . T 4 HOH A 20 1420 104 HOH HOH . T 4 HOH A 21 1421 70 HOH HOH . T 4 HOH A 22 1422 47 HOH HOH . T 4 HOH A 23 1423 89 HOH HOH . U 4 HOH C 1 1401 60 HOH HOH . U 4 HOH C 2 1402 15 HOH HOH . U 4 HOH C 3 1403 62 HOH HOH . U 4 HOH C 4 1404 97 HOH HOH . U 4 HOH C 5 1405 63 HOH HOH . U 4 HOH C 6 1406 9 HOH HOH . U 4 HOH C 7 1407 24 HOH HOH . U 4 HOH C 8 1408 91 HOH HOH . U 4 HOH C 9 1409 8 HOH HOH . U 4 HOH C 10 1410 19 HOH HOH . U 4 HOH C 11 1411 54 HOH HOH . U 4 HOH C 12 1412 96 HOH HOH . U 4 HOH C 13 1413 93 HOH HOH . U 4 HOH C 14 1414 113 HOH HOH . U 4 HOH C 15 1415 41 HOH HOH . U 4 HOH C 16 1416 37 HOH HOH . V 4 HOH D 1 1401 25 HOH HOH . V 4 HOH D 2 1402 84 HOH HOH . V 4 HOH D 3 1403 26 HOH HOH . V 4 HOH D 4 1404 33 HOH HOH . V 4 HOH D 5 1405 11 HOH HOH . V 4 HOH D 6 1406 111 HOH HOH . V 4 HOH D 7 1407 14 HOH HOH . V 4 HOH D 8 1408 110 HOH HOH . V 4 HOH D 9 1409 61 HOH HOH . V 4 HOH D 10 1410 79 HOH HOH . V 4 HOH D 11 1411 18 HOH HOH . V 4 HOH D 12 1412 21 HOH HOH . V 4 HOH D 13 1413 31 HOH HOH . V 4 HOH D 14 1414 10 HOH HOH . V 4 HOH D 15 1415 23 HOH HOH . V 4 HOH D 16 1416 20 HOH HOH . V 4 HOH D 17 1417 103 HOH HOH . V 4 HOH D 18 1418 100 HOH HOH . V 4 HOH D 19 1419 30 HOH HOH . V 4 HOH D 20 1420 49 HOH HOH . V 4 HOH D 21 1421 52 HOH HOH . V 4 HOH D 22 1422 99 HOH HOH . W 4 HOH E 1 1401 82 HOH HOH . W 4 HOH E 2 1402 43 HOH HOH . W 4 HOH E 3 1403 7 HOH HOH . W 4 HOH E 4 1404 76 HOH HOH . W 4 HOH E 5 1405 45 HOH HOH . W 4 HOH E 6 1406 57 HOH HOH . W 4 HOH E 7 1407 51 HOH HOH . W 4 HOH E 8 1408 112 HOH HOH . W 4 HOH E 9 1409 28 HOH HOH . W 4 HOH E 10 1410 72 HOH HOH . W 4 HOH E 11 1411 64 HOH HOH . W 4 HOH E 12 1412 107 HOH HOH . W 4 HOH E 13 1413 90 HOH HOH . X 4 HOH F 1 1401 22 HOH HOH . X 4 HOH F 2 1402 67 HOH HOH . X 4 HOH F 3 1403 36 HOH HOH . X 4 HOH F 4 1404 42 HOH HOH . X 4 HOH F 5 1405 65 HOH HOH . X 4 HOH F 6 1406 2 HOH HOH . X 4 HOH F 7 1407 106 HOH HOH . X 4 HOH F 8 1408 74 HOH HOH . X 4 HOH F 9 1409 48 HOH HOH . X 4 HOH F 10 1410 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 VNS . . . M 2 17.031 -30.244 -63.464 1 30 ? O01 VNS 1301 D 1 HETATM 2 C C02 VNS . . . M 2 17.643 -30.874 -62.755 1 30 ? C02 VNS 1301 D 1 HETATM 3 C C04 VNS . . . M 2 19.432 -29.06 -62.236 1 30 ? C04 VNS 1301 D 1 HETATM 4 C C06 VNS . . . M 2 20.86 -27.195 -62.231 1 30 ? C06 VNS 1301 D 1 HETATM 5 C C07 VNS . . . M 2 19.722 -26.542 -62.691 1 30 ? C07 VNS 1301 D 1 HETATM 6 C C09 VNS . . . M 2 17.118 -32.427 -62.494 1 30 ? C09 VNS 1301 D 1 HETATM 7 C C11 VNS . . . M 2 16.434 -33.327 -64.895 1 30 ? C11 VNS 1301 D 1 HETATM 8 C C12 VNS . . . M 2 15.177 -33.579 -65.697 1 30 ? C12 VNS 1301 D 1 HETATM 9 C C13 VNS . . . M 2 14.932 -34.083 -67.012 1 30 ? C13 VNS 1301 D 1 HETATM 10 C C14 VNS . . . M 2 13.627 -34.23 -67.55 1 30 ? C14 VNS 1301 D 1 HETATM 11 C C16 VNS . . . M 2 14.07 -34.486 -70.174 1 30 ? C16 VNS 1301 D 1 HETATM 12 C C18 VNS . . . M 2 12.727 -35.957 -71.688 1 30 ? C18 VNS 1301 D 1 HETATM 13 C C19 VNS . . . M 2 12.357 -36.577 -73.077 1 30 ? C19 VNS 1301 D 1 HETATM 14 C C20 VNS . . . M 2 12.955 -37.964 -73.03 1 30 ? C20 VNS 1301 D 1 HETATM 15 C C21 VNS . . . M 2 12.76 -38.772 -74.331 1 30 ? C21 VNS 1301 D 1 HETATM 16 C C23 VNS . . . M 2 12.449 -38.768 -76.63 1 30 ? C23 VNS 1301 D 1 HETATM 17 C C24 VNS . . . M 2 12.707 -36.693 -75.65 1 30 ? C24 VNS 1301 D 1 HETATM 18 C C25 VNS . . . M 2 12.853 -35.877 -74.344 1 30 ? C25 VNS 1301 D 1 HETATM 19 C C15 VNS . . . M 2 13.353 -34.795 -68.998 1 30 ? C15 VNS 1301 D 1 HETATM 20 C C17 VNS . . . M 2 13.775 -35.036 -71.465 1 30 ? C17 VNS 1301 D 1 HETATM 21 C C26 VNS . . . M 2 12.002 -36.274 -70.514 1 30 ? C26 VNS 1301 D 1 HETATM 22 C C27 VNS . . . M 2 12.307 -35.72 -69.238 1 30 ? C27 VNS 1301 D 1 HETATM 23 C C28 VNS . . . M 2 12.58 -33.836 -66.662 1 30 ? C28 VNS 1301 D 1 HETATM 24 C C29 VNS . . . M 2 12.8 -33.334 -65.35 1 30 ? C29 VNS 1301 D 1 HETATM 25 C C30 VNS . . . M 2 14.122 -33.204 -64.857 1 30 ? C30 VNS 1301 D 1 HETATM 26 C C31 VNS . . . M 2 14.661 -32.706 -63.521 1 30 ? C31 VNS 1301 D 1 HETATM 27 C C33 VNS . . . M 2 16.57 -32.575 -61.025 1 30 ? C33 VNS 1301 D 1 HETATM 28 C C34 VNS . . . M 2 16.475 -31.489 -60.16 1 30 ? C34 VNS 1301 D 1 HETATM 29 C C35 VNS . . . M 2 16.002 -31.612 -58.834 1 30 ? C35 VNS 1301 D 1 HETATM 30 C C37 VNS . . . M 2 15.605 -32.863 -58.332 1 30 ? C37 VNS 1301 D 1 HETATM 31 C C38 VNS . . . M 2 15.692 -33.971 -59.165 1 30 ? C38 VNS 1301 D 1 HETATM 32 C C39 VNS . . . M 2 16.172 -33.837 -60.482 1 30 ? C39 VNS 1301 D 1 HETATM 33 F F36 VNS . . . M 2 15.927 -30.566 -58.073 1 30 ? F36 VNS 1301 D 1 HETATM 34 N N03 VNS . . . M 2 18.871 -30.384 -62.096 1 30 ? N03 VNS 1301 D 1 HETATM 35 N N05 VNS . . . M 2 20.676 -28.602 -61.977 1 30 ? N05 VNS 1301 D 1 HETATM 36 N N10 VNS . . . M 2 16.157 -32.803 -63.579 1 30 ? N10 VNS 1301 D 1 HETATM 37 N N22 VNS . . . M 2 12.149 -38.018 -75.42 1 30 ? N22 VNS 1301 D 1 HETATM 38 O O32 VNS . . . M 2 17.594 -33.519 -65.245 1 30 ? O32 VNS 1301 D 1 HETATM 39 O O40 VNS . . . M 2 16.257 -34.936 -61.296 1 30 ? O40 VNS 1301 D 1 HETATM 40 S S08 VNS . . . M 2 18.439 -27.669 -62.808 1 30 ? S08 VNS 1301 D 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 40 #