data_7K1I # _model_server_result.job_id 3b6aTALAHkFudI0da5muow _model_server_result.datetime_utc '2024-11-14 16:58:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k1i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1102}' # _entry.id 7K1I # _exptl.entry_id 7K1I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.19 _cell.angle_gamma 90 _cell.entry_id 7K1I _cell.length_a 148.03 _cell.length_b 35.8 _cell.length_c 54.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K1I _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 151 A ASN 842 1_555 B MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc2 A OD2 ASP 164 A ASP 855 1_555 B MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc3 B MG MG . A MG 1101 1_555 C O2G ANP . A ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc4 B MG MG . A MG 1101 1_555 C O2A ANP . A ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.792 ? metalc ? metalc5 B MG MG . A MG 1101 1_555 C O1B ANP . A ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7K1I _atom_sites.fract_transf_matrix[1][1] 0.006755 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001214 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.027933 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018541 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1101 1099 MG MG . C 3 ANP A 1 1102 1101 ANP ANP . D 4 VNS A 1 1103 1103 VNS J63 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 22.751 -7.779 5.107 1 154.11 ? PG ANP 1102 A 1 HETATM 2 O O1G ANP . . . C 3 23.505 -7.194 3.952 1 154.99 ? O1G ANP 1102 A 1 HETATM 3 O O2G ANP . . . C 3 21.436 -8.49 4.607 1 161.35 ? O2G ANP 1102 A 1 HETATM 4 O O3G ANP . . . C 3 23.594 -8.881 5.858 1 151.23 ? O3G ANP 1102 A 1 HETATM 5 P PB ANP . . . C 3 20.776 -6.18 6.113 1 160.45 ? PB ANP 1102 A 1 HETATM 6 O O1B ANP . . . C 3 19.968 -7.427 6.053 1 161.81 ? O1B ANP 1102 A 1 HETATM 7 O O2B ANP . . . C 3 20.335 -5.421 7.387 1 162.25 ? O2B ANP 1102 A 1 HETATM 8 N N3B ANP . . . C 3 22.398 -6.544 6.198 1 159.95 ? N3B ANP 1102 A 1 HETATM 9 P PA ANP . . . C 3 19.617 -5.635 3.667 1 163.84 ? PA ANP 1102 A 1 HETATM 10 O O1A ANP . . . C 3 20.034 -4.906 2.444 1 170.09 ? O1A ANP 1102 A 1 HETATM 11 O O2A ANP . . . C 3 19.678 -7.155 3.519 1 167.32 ? O2A ANP 1102 A 1 HETATM 12 O O3A ANP . . . C 3 20.576 -5.257 4.875 1 165.48 ? O3A ANP 1102 A 1 HETATM 13 O O5' ANP . . . C 3 18.157 -5.171 4.09 1 148.87 ? O5' ANP 1102 A 1 HETATM 14 C C5' ANP . . . C 3 17.824 -3.771 4.25 1 143.72 ? C5' ANP 1102 A 1 HETATM 15 C C4' ANP . . . C 3 16.532 -3.643 5.021 1 132.73 ? C4' ANP 1102 A 1 HETATM 16 O O4' ANP . . . C 3 15.461 -4.222 4.243 1 122.17 ? O4' ANP 1102 A 1 HETATM 17 C C3' ANP . . . C 3 16.507 -4.332 6.39 1 129.67 ? C3' ANP 1102 A 1 HETATM 18 O O3' ANP . . . C 3 15.956 -3.511 7.416 1 131.55 ? O3' ANP 1102 A 1 HETATM 19 C C2' ANP . . . C 3 15.698 -5.609 6.124 1 120.51 ? C2' ANP 1102 A 1 HETATM 20 O O2' ANP . . . C 3 14.864 -6.06 7.185 1 119.2 ? O2' ANP 1102 A 1 HETATM 21 C C1' ANP . . . C 3 14.747 -5.148 5.032 1 115.58 ? C1' ANP 1102 A 1 HETATM 22 N N9 ANP . . . C 3 14.27 -6.23 4.187 1 106.42 ? N9 ANP 1102 A 1 HETATM 23 C C8 ANP . . . C 3 14.998 -7.217 3.571 1 102.84 ? C8 ANP 1102 A 1 HETATM 24 N N7 ANP . . . C 3 14.273 -8.065 2.884 1 96.24 ? N7 ANP 1102 A 1 HETATM 25 C C5 ANP . . . C 3 12.972 -7.609 3.065 1 98 ? C5 ANP 1102 A 1 HETATM 26 C C6 ANP . . . C 3 11.728 -8.069 2.594 1 101.94 ? C6 ANP 1102 A 1 HETATM 27 N N6 ANP . . . C 3 11.577 -9.137 1.808 1 102.95 ? N6 ANP 1102 A 1 HETATM 28 N N1 ANP . . . C 3 10.624 -7.38 2.963 1 101.73 ? N1 ANP 1102 A 1 HETATM 29 C C2 ANP . . . C 3 10.766 -6.309 3.746 1 104.27 ? C2 ANP 1102 A 1 HETATM 30 N N3 ANP . . . C 3 11.884 -5.782 4.249 1 105.51 ? N3 ANP 1102 A 1 HETATM 31 C C4 ANP . . . C 3 12.962 -6.484 3.868 1 101.38 ? C4 ANP 1102 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #