data_7K1I
#
_model_server_result.job_id            DjD5BJqufU9yESSYXwtl0Q 
_model_server_result.datetime_utc      '2024-11-28 06:53:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7k1i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1103}' 
#
_entry.id    7K1I 
#
_exptl.entry_id    7K1I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              556.65 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{6-[4-(1-methylpiperidin-4-yl)phenyl]-1-oxo-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.19 
_cell.angle_gamma         90 
_cell.entry_id            7K1I 
_cell.length_a            148.03 
_cell.length_b            35.8 
_cell.length_c            54.8 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7K1I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 151 A ASN 842 1_555 B MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc2 A OD2 ASP 164 A ASP 855 1_555 B MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc3 B MG MG . A MG 1101 1_555 C O2G ANP . A ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc4 B MG MG . A MG 1101 1_555 C O2A ANP . A ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.792 ? 
metalc ? metalc5 B MG MG . A MG 1101 1_555 C O1B ANP . A ANP 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.936 ? 
#
_chem_comp.formula           'C31 H29 F N4 O3 S' 
_chem_comp.formula_weight    556.65 
_chem_comp.id                VNS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2R)-2-(5-fluoro-2-hydroxyphenyl)-2-{6-[4-(1-methylpiperidin-4-yl)phenyl]-1-oxo-1,3-dihydro-2H-isoindol-2-yl}-N-(1,3-thiazol-2-yl)acetamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C24 N22 VNS sing 424 n n 
C24 C25 VNS sing 425 n n 
N22 C23 VNS sing 426 n n 
N22 C21 VNS sing 427 n n 
C25 C19 VNS sing 428 n n 
C21 C20 VNS sing 429 n n 
C19 C20 VNS sing 430 n n 
C19 C18 VNS sing 431 n n 
C18 C26 VNS doub 432 n y 
C18 C17 VNS sing 433 n y 
C26 C27 VNS sing 434 n y 
C17 C16 VNS doub 435 n y 
C27 C15 VNS doub 436 n y 
C16 C15 VNS sing 437 n y 
C15 C14 VNS sing 438 n n 
C14 C13 VNS doub 439 n y 
C14 C28 VNS sing 440 n y 
C13 C12 VNS sing 441 n y 
C28 C29 VNS doub 442 n y 
O32 C11 VNS doub 443 n n 
C12 C11 VNS sing 444 n n 
C12 C30 VNS doub 445 n y 
C11 N10 VNS sing 446 n n 
C29 C30 VNS sing 447 n y 
O40 C39 VNS sing 448 n n 
C30 C31 VNS sing 449 n n 
N10 C31 VNS sing 450 n n 
N10 C09 VNS sing 451 n n 
C39 C38 VNS doub 452 n y 
C39 C33 VNS sing 453 n y 
C09 C33 VNS sing 454 n n 
C09 C02 VNS sing 455 n n 
C38 C37 VNS sing 456 n y 
C33 C34 VNS doub 457 n y 
C02 N03 VNS sing 458 n n 
C02 O01 VNS doub 459 n n 
N03 C04 VNS sing 460 n n 
C37 C35 VNS doub 461 n y 
C34 C35 VNS sing 462 n y 
C04 N05 VNS doub 463 n y 
C04 S08 VNS sing 464 n y 
C35 F36 VNS sing 465 n n 
N05 C06 VNS sing 466 n y 
S08 C07 VNS sing 467 n y 
C06 C07 VNS doub 468 n y 
C06 H1 VNS sing 469 n n 
C07 H2 VNS sing 470 n n 
C09 H3 VNS sing 471 n n 
C13 H4 VNS sing 472 n n 
C16 H5 VNS sing 473 n n 
C19 H6 VNS sing 474 n n 
C20 H7 VNS sing 475 n n 
C20 H8 VNS sing 476 n n 
C21 H9 VNS sing 477 n n 
C21 H10 VNS sing 478 n n 
C23 H11 VNS sing 479 n n 
C23 H12 VNS sing 480 n n 
C23 H13 VNS sing 481 n n 
C24 H14 VNS sing 482 n n 
C24 H15 VNS sing 483 n n 
C25 H16 VNS sing 484 n n 
C25 H17 VNS sing 485 n n 
C17 H18 VNS sing 486 n n 
C26 H19 VNS sing 487 n n 
C27 H20 VNS sing 488 n n 
C28 H21 VNS sing 489 n n 
C29 H22 VNS sing 490 n n 
C31 H23 VNS sing 491 n n 
C31 H24 VNS sing 492 n n 
C34 H25 VNS sing 493 n n 
C37 H26 VNS sing 494 n n 
C38 H27 VNS sing 495 n n 
N03 H28 VNS sing 496 n n 
O40 H30 VNS sing 497 n n 
#
_atom_sites.entry_id                     7K1I 
_atom_sites.fract_transf_matrix[1][1]    0.006755 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001214 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.027933 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018541 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 1101 1099 MG MG . 
C 3 ANP A 1 1102 1101 ANP ANP . 
D 4 VNS A 1 1103 1103 VNS J63 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O01 VNS . . . D 4 17.941 -10.254 -3.358 1 106.75 ? O01 VNS 1103 A 1 
HETATM 2 C C02 VNS . . . D 4 18.042 -10.62 -2.252 1 109.41 ? C02 VNS 1103 A 1 
HETATM 3 C C04 VNS . . . D 4 16.335 -8.883 -1.277 1 122.44 ? C04 VNS 1103 A 1 
HETATM 4 C C06 VNS . . . D 4 14.873 -7.05 -0.941 1 125.28 ? C06 VNS 1103 A 1 
HETATM 5 C C07 VNS . . . D 4 14.552 -7.289 -2.278 1 123.27 ? C07 VNS 1103 A 1 
HETATM 6 C C09 VNS . . . D 4 19.111 -11.919 -1.945 1 106.15 ? C09 VNS 1103 A 1 
HETATM 7 C C11 VNS . . . D 4 21.392 -11.409 -3.158 1 120.66 ? C11 VNS 1103 A 1 
HETATM 8 C C12 VNS . . . D 4 22.135 -11.801 -4.451 1 122.33 ? C12 VNS 1103 A 1 
HETATM 9 C C13 VNS . . . D 4 23.411 -11.456 -5.023 1 131.08 ? C13 VNS 1103 A 1 
HETATM 10 C C14 VNS . . . D 4 23.878 -11.958 -6.277 1 134.87 ? C14 VNS 1103 A 1 
HETATM 11 C C16 VNS . . . D 4 25.831 -10.254 -7.097 1 144.06 ? C16 VNS 1103 A 1 
HETATM 12 C C18 VNS . . . D 4 28.114 -10.958 -7.899 1 151.15 ? C18 VNS 1103 A 1 
HETATM 13 C C19 VNS . . . D 4 29.567 -10.634 -8.439 1 158.7 ? C19 VNS 1103 A 1 
HETATM 14 C C20 VNS . . . D 4 30.24 -10.138 -7.163 1 159.22 ? C20 VNS 1103 A 1 
HETATM 15 C C21 VNS . . . D 4 31.535 -9.298 -7.323 1 168.59 ? C21 VNS 1103 A 1 
HETATM 16 C C23 VNS . . . D 4 30.555 -7.271 -7.916 1 167.45 ? C23 VNS 1103 A 1 
HETATM 17 C C24 VNS . . . D 4 31.011 -8.74 -9.652 1 173.01 ? C24 VNS 1103 A 1 
HETATM 18 C C25 VNS . . . D 4 29.688 -9.556 -9.538 1 165.57 ? C25 VNS 1103 A 1 
HETATM 19 C C15 VNS . . . D 4 25.332 -11.565 -6.86 1 142.23 ? C15 VNS 1103 A 1 
HETATM 20 C C17 VNS . . . D 4 27.151 -9.963 -7.594 1 148.56 ? C17 VNS 1103 A 1 
HETATM 21 C C26 VNS . . . D 4 27.636 -12.279 -7.655 1 149.55 ? C26 VNS 1103 A 1 
HETATM 22 C C27 VNS . . . D 4 26.317 -12.558 -7.158 1 144.96 ? C27 VNS 1103 A 1 
HETATM 23 C C28 VNS . . . D 4 22.97 -12.869 -6.91 1 130.34 ? C28 VNS 1103 A 1 
HETATM 24 C C29 VNS . . . D 4 21.699 -13.228 -6.364 1 123.55 ? C29 VNS 1103 A 1 
HETATM 25 C C30 VNS . . . D 4 21.274 -12.686 -5.114 1 116.07 ? C30 VNS 1103 A 1 
HETATM 26 C C31 VNS . . . D 4 19.98 -12.884 -4.299 1 108.27 ? C31 VNS 1103 A 1 
HETATM 27 C C33 VNS . . . D 4 18.329 -13.252 -1.684 1 93.32 ? C33 VNS 1103 A 1 
HETATM 28 C C34 VNS . . . D 4 16.942 -13.283 -1.612 1 89.99 ? C34 VNS 1103 A 1 
HETATM 29 C C35 VNS . . . D 4 16.222 -14.486 -1.369 1 88.17 ? C35 VNS 1103 A 1 
HETATM 30 C C37 VNS . . . D 4 16.914 -15.712 -1.194 1 84.02 ? C37 VNS 1103 A 1 
HETATM 31 C C38 VNS . . . D 4 18.309 -15.712 -1.262 1 87.44 ? C38 VNS 1103 A 1 
HETATM 32 C C39 VNS . . . D 4 19.011 -14.507 -1.503 1 90.96 ? C39 VNS 1103 A 1 
HETATM 33 F F36 VNS . . . D 4 14.906 -14.468 -1.31 1 91.9 ? F36 VNS 1103 A 1 
HETATM 34 N N03 VNS . . . D 4 17.294 -9.977 -1.127 1 116.07 ? N03 VNS 1103 A 1 
HETATM 35 N N05 VNS . . . D 4 15.867 -7.96 -0.394 1 126.4 ? N05 VNS 1103 A 1 
HETATM 36 N N10 VNS . . . D 4 20.106 -12.041 -3.055 1 111.78 ? N10 VNS 1103 A 1 
HETATM 37 N N22 VNS . . . D 4 31.516 -8.277 -8.369 1 171.75 ? N22 VNS 1103 A 1 
HETATM 38 O O32 VNS . . . D 4 21.742 -10.655 -2.245 1 123.04 ? O32 VNS 1103 A 1 
HETATM 39 O O40 VNS . . . D 4 20.39 -14.5 -1.57 1 95.75 ? O40 VNS 1103 A 1 
HETATM 40 S S08 VNS . . . D 4 15.473 -8.628 -2.856 1 123.78 ? S08 VNS 1103 A 1 
#
_model_server_stats.io_time_ms              68 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           40 
#