data_7K1L # _model_server_result.job_id I2NSvr39mpqb0zRY0PstyA _model_server_result.datetime_utc '2024-11-08 15:44:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k1l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 7K1L # _exptl.entry_id 7K1L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7K1L _cell.length_a 150.832 _cell.length_b 150.832 _cell.length_c 110.734 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K1L _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall 'P 6c' _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -75.416 130.624344 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -150.832 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id V _struct_conn.ptnr1_label_comp_id UVC _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id UVC _struct_conn.ptnr1_auth_seq_id 401 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id J _struct_conn.ptnr2_label_atom_id O _struct_conn.ptnr2_label_comp_id HOH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HOH _struct_conn.ptnr2_auth_seq_id 502 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.77 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 89 n n C1 C2 EDO sing 90 n n C1 H11 EDO sing 91 n n C1 H12 EDO sing 92 n n O1 HO1 EDO sing 93 n n C2 O2 EDO sing 94 n n C2 H21 EDO sing 95 n n C2 H22 EDO sing 96 n n O2 HO2 EDO sing 97 n n # _atom_sites.entry_id 7K1L _atom_sites.fract_transf_matrix[1][1] 0.00663 _atom_sites.fract_transf_matrix[1][2] 0.003828 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007656 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009031 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 UVC A 1 401 401 UVC UVC . D 3 ACT A 1 402 501 ACT ACT . E 3 ACT A 1 403 601 ACT ACT . F 4 EDO A 1 404 501 EDO EDO . G 5 SO4 A 1 405 1 SO4 SO4 . H 2 UVC B 1 401 401 UVC UVC . I 5 SO4 B 1 402 2 SO4 SO4 . J 6 HOH A 1 501 217 HOH HOH . J 6 HOH A 2 502 254 HOH HOH . J 6 HOH A 3 503 202 HOH HOH . J 6 HOH A 4 504 184 HOH HOH . J 6 HOH A 5 505 247 HOH HOH . J 6 HOH A 6 506 179 HOH HOH . J 6 HOH A 7 507 200 HOH HOH . J 6 HOH A 8 508 141 HOH HOH . J 6 HOH A 9 509 215 HOH HOH . J 6 HOH A 10 510 194 HOH HOH . J 6 HOH A 11 511 233 HOH HOH . J 6 HOH A 12 512 259 HOH HOH . J 6 HOH A 13 513 114 HOH HOH . J 6 HOH A 14 514 143 HOH HOH . J 6 HOH A 15 515 170 HOH HOH . J 6 HOH A 16 516 63 HOH HOH . J 6 HOH A 17 517 123 HOH HOH . J 6 HOH A 18 518 232 HOH HOH . J 6 HOH A 19 519 153 HOH HOH . J 6 HOH A 20 520 198 HOH HOH . J 6 HOH A 21 521 86 HOH HOH . J 6 HOH A 22 522 43 HOH HOH . J 6 HOH A 23 523 103 HOH HOH . J 6 HOH A 24 524 85 HOH HOH . J 6 HOH A 25 525 76 HOH HOH . J 6 HOH A 26 526 45 HOH HOH . J 6 HOH A 27 527 44 HOH HOH . J 6 HOH A 28 528 263 HOH HOH . J 6 HOH A 29 529 166 HOH HOH . J 6 HOH A 30 530 19 HOH HOH . J 6 HOH A 31 531 31 HOH HOH . J 6 HOH A 32 532 265 HOH HOH . J 6 HOH A 33 533 51 HOH HOH . J 6 HOH A 34 534 82 HOH HOH . J 6 HOH A 35 535 158 HOH HOH . J 6 HOH A 36 536 89 HOH HOH . J 6 HOH A 37 537 231 HOH HOH . J 6 HOH A 38 538 224 HOH HOH . J 6 HOH A 39 539 104 HOH HOH . J 6 HOH A 40 540 12 HOH HOH . J 6 HOH A 41 541 111 HOH HOH . J 6 HOH A 42 542 220 HOH HOH . J 6 HOH A 43 543 22 HOH HOH . J 6 HOH A 44 544 164 HOH HOH . J 6 HOH A 45 545 195 HOH HOH . J 6 HOH A 46 546 172 HOH HOH . J 6 HOH A 47 547 77 HOH HOH . J 6 HOH A 48 548 258 HOH HOH . J 6 HOH A 49 549 201 HOH HOH . J 6 HOH A 50 550 208 HOH HOH . J 6 HOH A 51 551 253 HOH HOH . J 6 HOH A 52 552 188 HOH HOH . J 6 HOH A 53 553 140 HOH HOH . J 6 HOH A 54 554 34 HOH HOH . J 6 HOH A 55 555 126 HOH HOH . J 6 HOH A 56 556 109 HOH HOH . J 6 HOH A 57 557 18 HOH HOH . J 6 HOH A 58 558 226 HOH HOH . J 6 HOH A 59 559 167 HOH HOH . J 6 HOH A 60 560 185 HOH HOH . J 6 HOH A 61 561 190 HOH HOH . J 6 HOH A 62 562 152 HOH HOH . J 6 HOH A 63 563 222 HOH HOH . J 6 HOH A 64 564 17 HOH HOH . J 6 HOH A 65 565 38 HOH HOH . J 6 HOH A 66 566 245 HOH HOH . J 6 HOH A 67 567 196 HOH HOH . J 6 HOH A 68 568 80 HOH HOH . J 6 HOH A 69 569 112 HOH HOH . J 6 HOH A 70 570 119 HOH HOH . J 6 HOH A 71 571 118 HOH HOH . J 6 HOH A 72 572 94 HOH HOH . J 6 HOH A 73 573 54 HOH HOH . J 6 HOH A 74 574 98 HOH HOH . J 6 HOH A 75 575 147 HOH HOH . J 6 HOH A 76 576 9 HOH HOH . J 6 HOH A 77 577 91 HOH HOH . J 6 HOH A 78 578 150 HOH HOH . J 6 HOH A 79 579 70 HOH HOH . J 6 HOH A 80 580 186 HOH HOH . J 6 HOH A 81 581 73 HOH HOH . J 6 HOH A 82 582 4 HOH HOH . J 6 HOH A 83 583 59 HOH HOH . J 6 HOH A 84 584 93 HOH HOH . J 6 HOH A 85 585 26 HOH HOH . J 6 HOH A 86 586 37 HOH HOH . J 6 HOH A 87 587 115 HOH HOH . J 6 HOH A 88 588 50 HOH HOH . J 6 HOH A 89 589 25 HOH HOH . J 6 HOH A 90 590 124 HOH HOH . J 6 HOH A 91 591 29 HOH HOH . J 6 HOH A 92 592 16 HOH HOH . J 6 HOH A 93 593 155 HOH HOH . J 6 HOH A 94 594 134 HOH HOH . J 6 HOH A 95 595 92 HOH HOH . J 6 HOH A 96 596 46 HOH HOH . J 6 HOH A 97 597 75 HOH HOH . J 6 HOH A 98 598 249 HOH HOH . J 6 HOH A 99 599 79 HOH HOH . J 6 HOH A 100 600 72 HOH HOH . J 6 HOH A 101 601 106 HOH HOH . J 6 HOH A 102 602 23 HOH HOH . J 6 HOH A 103 603 266 HOH HOH . J 6 HOH A 104 604 250 HOH HOH . J 6 HOH A 105 605 206 HOH HOH . J 6 HOH A 106 606 32 HOH HOH . J 6 HOH A 107 607 39 HOH HOH . J 6 HOH A 108 608 117 HOH HOH . J 6 HOH A 109 609 84 HOH HOH . J 6 HOH A 110 610 252 HOH HOH . J 6 HOH A 111 611 129 HOH HOH . J 6 HOH A 112 612 13 HOH HOH . J 6 HOH A 113 613 154 HOH HOH . J 6 HOH A 114 614 236 HOH HOH . J 6 HOH A 115 615 36 HOH HOH . J 6 HOH A 116 616 95 HOH HOH . J 6 HOH A 117 617 30 HOH HOH . J 6 HOH A 118 618 257 HOH HOH . J 6 HOH A 119 619 157 HOH HOH . J 6 HOH A 120 620 223 HOH HOH . J 6 HOH A 121 621 221 HOH HOH . J 6 HOH A 122 622 260 HOH HOH . J 6 HOH A 123 623 193 HOH HOH . J 6 HOH A 124 624 110 HOH HOH . J 6 HOH A 125 625 131 HOH HOH . J 6 HOH A 126 626 183 HOH HOH . J 6 HOH A 127 627 145 HOH HOH . J 6 HOH A 128 628 197 HOH HOH . J 6 HOH A 129 629 97 HOH HOH . J 6 HOH A 130 630 189 HOH HOH . J 6 HOH A 131 631 264 HOH HOH . J 6 HOH A 132 632 132 HOH HOH . J 6 HOH A 133 633 96 HOH HOH . J 6 HOH A 134 634 14 HOH HOH . J 6 HOH A 135 635 133 HOH HOH . K 6 HOH B 1 501 238 HOH HOH . K 6 HOH B 2 502 169 HOH HOH . K 6 HOH B 3 503 42 HOH HOH . K 6 HOH B 4 504 99 HOH HOH . K 6 HOH B 5 505 207 HOH HOH . K 6 HOH B 6 506 108 HOH HOH . K 6 HOH B 7 507 160 HOH HOH . K 6 HOH B 8 508 218 HOH HOH . K 6 HOH B 9 509 35 HOH HOH . K 6 HOH B 10 510 213 HOH HOH . K 6 HOH B 11 511 209 HOH HOH . K 6 HOH B 12 512 121 HOH HOH . K 6 HOH B 13 513 66 HOH HOH . K 6 HOH B 14 514 28 HOH HOH . K 6 HOH B 15 515 21 HOH HOH . K 6 HOH B 16 516 107 HOH HOH . K 6 HOH B 17 517 40 HOH HOH . K 6 HOH B 18 518 199 HOH HOH . K 6 HOH B 19 519 62 HOH HOH . K 6 HOH B 20 520 137 HOH HOH . K 6 HOH B 21 521 227 HOH HOH . K 6 HOH B 22 522 6 HOH HOH . K 6 HOH B 23 523 261 HOH HOH . K 6 HOH B 24 524 148 HOH HOH . K 6 HOH B 25 525 235 HOH HOH . K 6 HOH B 26 526 239 HOH HOH . K 6 HOH B 27 527 256 HOH HOH . K 6 HOH B 28 528 48 HOH HOH . K 6 HOH B 29 529 211 HOH HOH . K 6 HOH B 30 530 138 HOH HOH . K 6 HOH B 31 531 225 HOH HOH . K 6 HOH B 32 532 205 HOH HOH . K 6 HOH B 33 533 74 HOH HOH . K 6 HOH B 34 534 151 HOH HOH . K 6 HOH B 35 535 240 HOH HOH . K 6 HOH B 36 536 142 HOH HOH . K 6 HOH B 37 537 156 HOH HOH . K 6 HOH B 38 538 55 HOH HOH . K 6 HOH B 39 539 159 HOH HOH . K 6 HOH B 40 540 139 HOH HOH . K 6 HOH B 41 541 210 HOH HOH . K 6 HOH B 42 542 1 HOH HOH . K 6 HOH B 43 543 149 HOH HOH . K 6 HOH B 44 544 5 HOH HOH . K 6 HOH B 45 545 81 HOH HOH . K 6 HOH B 46 546 228 HOH HOH . K 6 HOH B 47 547 176 HOH HOH . K 6 HOH B 48 548 187 HOH HOH . K 6 HOH B 49 549 102 HOH HOH . K 6 HOH B 50 550 255 HOH HOH . K 6 HOH B 51 551 41 HOH HOH . K 6 HOH B 52 552 20 HOH HOH . K 6 HOH B 53 553 57 HOH HOH . K 6 HOH B 54 554 212 HOH HOH . K 6 HOH B 55 555 136 HOH HOH . K 6 HOH B 56 556 242 HOH HOH . K 6 HOH B 57 557 64 HOH HOH . K 6 HOH B 58 558 113 HOH HOH . K 6 HOH B 59 559 7 HOH HOH . K 6 HOH B 60 560 173 HOH HOH . K 6 HOH B 61 561 11 HOH HOH . K 6 HOH B 62 562 127 HOH HOH . K 6 HOH B 63 563 78 HOH HOH . K 6 HOH B 64 564 24 HOH HOH . K 6 HOH B 65 565 175 HOH HOH . K 6 HOH B 66 566 90 HOH HOH . K 6 HOH B 67 567 144 HOH HOH . K 6 HOH B 68 568 216 HOH HOH . K 6 HOH B 69 569 116 HOH HOH . K 6 HOH B 70 570 120 HOH HOH . K 6 HOH B 71 571 47 HOH HOH . K 6 HOH B 72 572 168 HOH HOH . K 6 HOH B 73 573 67 HOH HOH . K 6 HOH B 74 574 100 HOH HOH . K 6 HOH B 75 575 244 HOH HOH . K 6 HOH B 76 576 52 HOH HOH . K 6 HOH B 77 577 203 HOH HOH . K 6 HOH B 78 578 87 HOH HOH . K 6 HOH B 79 579 2 HOH HOH . K 6 HOH B 80 580 68 HOH HOH . K 6 HOH B 81 581 49 HOH HOH . K 6 HOH B 82 582 60 HOH HOH . K 6 HOH B 83 583 69 HOH HOH . K 6 HOH B 84 584 53 HOH HOH . K 6 HOH B 85 585 262 HOH HOH . K 6 HOH B 86 586 130 HOH HOH . K 6 HOH B 87 587 105 HOH HOH . K 6 HOH B 88 588 171 HOH HOH . K 6 HOH B 89 589 122 HOH HOH . K 6 HOH B 90 590 174 HOH HOH . K 6 HOH B 91 591 219 HOH HOH . K 6 HOH B 92 592 101 HOH HOH . K 6 HOH B 93 593 243 HOH HOH . K 6 HOH B 94 594 135 HOH HOH . K 6 HOH B 95 595 234 HOH HOH . K 6 HOH B 96 596 241 HOH HOH . K 6 HOH B 97 597 162 HOH HOH . K 6 HOH B 98 598 10 HOH HOH . K 6 HOH B 99 599 61 HOH HOH . K 6 HOH B 100 600 15 HOH HOH . K 6 HOH B 101 601 65 HOH HOH . K 6 HOH B 102 602 178 HOH HOH . K 6 HOH B 103 603 71 HOH HOH . K 6 HOH B 104 604 88 HOH HOH . K 6 HOH B 105 605 3 HOH HOH . K 6 HOH B 106 606 214 HOH HOH . K 6 HOH B 107 607 229 HOH HOH . K 6 HOH B 108 608 181 HOH HOH . K 6 HOH B 109 609 27 HOH HOH . K 6 HOH B 110 610 230 HOH HOH . K 6 HOH B 111 611 180 HOH HOH . K 6 HOH B 112 612 146 HOH HOH . K 6 HOH B 113 613 251 HOH HOH . K 6 HOH B 114 614 125 HOH HOH . K 6 HOH B 115 615 165 HOH HOH . K 6 HOH B 116 616 237 HOH HOH . K 6 HOH B 117 617 83 HOH HOH . K 6 HOH B 118 618 128 HOH HOH . K 6 HOH B 119 619 161 HOH HOH . K 6 HOH B 120 620 33 HOH HOH . K 6 HOH B 121 621 248 HOH HOH . K 6 HOH B 122 622 246 HOH HOH . K 6 HOH B 123 623 163 HOH HOH . K 6 HOH B 124 624 56 HOH HOH . K 6 HOH B 125 625 192 HOH HOH . K 6 HOH B 126 626 8 HOH HOH . K 6 HOH B 127 627 177 HOH HOH . K 6 HOH B 128 628 182 HOH HOH . K 6 HOH B 129 629 58 HOH HOH . K 6 HOH B 130 630 191 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 -74.282 26.426 -0.977 1 73.29 ? C1 EDO 404 A 1 HETATM 2 O O1 EDO . . . F 4 -74.723 25.436 -0.039 1 55.91 ? O1 EDO 404 A 1 HETATM 3 C C2 EDO . . . F 4 -73.24 27.334 -0.328 1 61.06 ? C2 EDO 404 A 1 HETATM 4 O O2 EDO . . . F 4 -73.169 28.566 -1.059 1 58.71 ? O2 EDO 404 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #