data_7K1O # _model_server_result.job_id aRYGnIWd1GLmXd8-UVV_Cw _model_server_result.datetime_utc '2024-11-08 15:32:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k1o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":402}' # _entry.id 7K1O # _exptl.entry_id 7K1O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7K1O _cell.length_a 87.46 _cell.length_b 151.321 _cell.length_c 197.518 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K1O _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_654 -x+1,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 87.46 0 -98.759 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7K1O _atom_sites.fract_transf_matrix[1][1] 0.011434 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006608 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005063 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 VQV A 1 401 401 VQV U53 . E 3 EDO A 1 402 501 EDO EDO . F 2 VQV B 1 401 401 VQV U53 . G 3 EDO B 1 402 501 EDO EDO . H 2 VQV C 1 401 401 VQV U53 . I 3 EDO C 1 402 501 EDO EDO . J 4 HOH A 1 501 20 HOH HOH . J 4 HOH A 2 502 16 HOH HOH . J 4 HOH A 3 503 17 HOH HOH . J 4 HOH A 4 504 12 HOH HOH . J 4 HOH A 5 505 2 HOH HOH . J 4 HOH A 6 506 8 HOH HOH . J 4 HOH A 7 507 31 HOH HOH . J 4 HOH A 8 508 9 HOH HOH . J 4 HOH A 9 509 38 HOH HOH . J 4 HOH A 10 510 35 HOH HOH . J 4 HOH A 11 511 52 HOH HOH . J 4 HOH A 12 512 29 HOH HOH . J 4 HOH A 13 513 53 HOH HOH . J 4 HOH A 14 514 40 HOH HOH . J 4 HOH A 15 515 24 HOH HOH . J 4 HOH A 16 516 18 HOH HOH . J 4 HOH A 17 517 7 HOH HOH . J 4 HOH A 18 518 34 HOH HOH . J 4 HOH A 19 519 6 HOH HOH . J 4 HOH A 20 520 54 HOH HOH . J 4 HOH A 21 521 41 HOH HOH . K 4 HOH B 1 501 14 HOH HOH . K 4 HOH B 2 502 45 HOH HOH . K 4 HOH B 3 503 32 HOH HOH . K 4 HOH B 4 504 47 HOH HOH . K 4 HOH B 5 505 43 HOH HOH . K 4 HOH B 6 506 37 HOH HOH . K 4 HOH B 7 507 30 HOH HOH . K 4 HOH B 8 508 26 HOH HOH . K 4 HOH B 9 509 36 HOH HOH . K 4 HOH B 10 510 39 HOH HOH . K 4 HOH B 11 511 19 HOH HOH . L 4 HOH C 1 501 46 HOH HOH . L 4 HOH C 2 502 21 HOH HOH . L 4 HOH C 3 503 50 HOH HOH . L 4 HOH C 4 504 5 HOH HOH . L 4 HOH C 5 505 10 HOH HOH . L 4 HOH C 6 506 44 HOH HOH . L 4 HOH C 7 507 51 HOH HOH . L 4 HOH C 8 508 4 HOH HOH . L 4 HOH C 9 509 49 HOH HOH . L 4 HOH C 10 510 48 HOH HOH . L 4 HOH C 11 511 25 HOH HOH . L 4 HOH C 12 512 33 HOH HOH . L 4 HOH C 13 513 27 HOH HOH . L 4 HOH C 14 514 22 HOH HOH . L 4 HOH C 15 515 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 3 18.137 57.202 -26.986 1 80.44 ? C1 EDO 402 C 1 HETATM 2 O O1 EDO . . . I 3 18.719 55.937 -26.661 1 75.03 ? O1 EDO 402 C 1 HETATM 3 C C2 EDO . . . I 3 16.972 56.987 -27.941 1 84.09 ? C2 EDO 402 C 1 HETATM 4 O O2 EDO . . . I 3 16.076 56.023 -27.375 1 81.75 ? O2 EDO 402 C 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #