data_7K20 # _model_server_result.job_id rrKXf1raxMGtV4-kttc3JA _model_server_result.datetime_utc '2024-11-12 21:36:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k20 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":802}' # _entry.id 7K20 # _exptl.entry_id 7K20 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7K20 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K20 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 I N N ? 3 L N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 72 A GLU 72 1_555 A N HIC 73 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale2 A C HIC 73 A HIC 73 1_555 A N GLY 74 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 A SG CYS 374 A CYS 374 1_555 G C19 1T4 . A 1T4 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? covale ? covale4 B C GLU 72 B GLU 72 1_555 B N HIC 73 B HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale5 B C HIC 73 B HIC 73 1_555 B N GLY 74 B GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale6 B SG CYS 374 B CYS 374 1_555 J C19 1T4 . B 1T4 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? covale ? covale7 C C GLU 72 C GLU 72 1_555 C N HIC 73 C HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale8 C C HIC 73 C HIC 73 1_555 C N GLY 74 C GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale9 C SG CYS 374 C CYS 374 1_555 M C19 1T4 . C 1T4 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? covale ? covale10 D C GLU 72 D GLU 72 1_555 D N HIC 73 D HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale11 D C HIC 73 D HIC 73 1_555 D N GLY 74 D GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale12 D SG CYS 374 D CYS 374 1_555 P C19 1T4 . D 1T4 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc1 E MG MG . A MG 801 1_555 F O1B ADP . A ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? metalc ? metalc2 E MG MG . A MG 801 1_555 F O2B ADP . A ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc3 H MG MG . B MG 801 1_555 I O1B ADP . B ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc4 K MG MG . C MG 801 1_555 L O1B ADP . C ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc5 K MG MG . C MG 801 1_555 L O2B ADP . C ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc6 N MG MG . D MG 801 1_555 O O1B ADP . D ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7K20 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG A 1 801 801 MG MG . F 3 ADP A 1 802 901 ADP ADP . G 4 1T4 A 1 803 401 1T4 1T4 . H 2 MG B 1 801 801 MG MG . I 3 ADP B 1 802 901 ADP ADP . J 4 1T4 B 1 803 401 1T4 1T4 . K 2 MG C 1 801 801 MG MG . L 3 ADP C 1 802 901 ADP ADP . M 4 1T4 C 1 803 401 1T4 1T4 . N 2 MG D 1 801 801 MG MG . O 3 ADP D 1 802 901 ADP ADP . P 4 1T4 D 1 803 401 1T4 1T4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . L 3 156.855 179.987 156.538 1 63.27 ? PB ADP 802 C 1 HETATM 2 O O1B ADP . . . L 3 157.322 179.297 155.294 1 63.27 ? O1B ADP 802 C 1 HETATM 3 O O2B ADP . . . L 3 155.585 180.753 156.35 1 63.27 ? O2B ADP 802 C 1 HETATM 4 O O3B ADP . . . L 3 156.923 179.152 157.774 1 63.27 ? O3B ADP 802 C 1 HETATM 5 P PA ADP . . . L 3 157.469 182.573 157.234 1 63.27 ? PA ADP 802 C 1 HETATM 6 O O1A ADP . . . L 3 157.069 183.36 156.033 1 63.27 ? O1A ADP 802 C 1 HETATM 7 O O2A ADP . . . L 3 156.562 182.434 158.402 1 63.27 ? O2A ADP 802 C 1 HETATM 8 O O3A ADP . . . L 3 157.94 181.12 156.793 1 63.27 ? O3A ADP 802 C 1 HETATM 9 O O5' ADP . . . L 3 158.818 183.15 157.821 1 63.27 ? O5' ADP 802 C 1 HETATM 10 C C5' ADP . . . L 3 158.923 183.196 159.229 1 63.27 ? C5' ADP 802 C 1 HETATM 11 C C4' ADP . . . L 3 160.375 182.991 159.603 1 63.27 ? C4' ADP 802 C 1 HETATM 12 O O4' ADP . . . L 3 161.097 184.133 159.196 1 63.27 ? O4' ADP 802 C 1 HETATM 13 C C3' ADP . . . L 3 160.544 182.873 161.092 1 63.27 ? C3' ADP 802 C 1 HETATM 14 O O3' ADP . . . L 3 160.986 181.562 161.394 1 63.27 ? O3' ADP 802 C 1 HETATM 15 C C2' ADP . . . L 3 161.633 183.837 161.462 1 63.27 ? C2' ADP 802 C 1 HETATM 16 O O2' ADP . . . L 3 162.818 183.099 161.723 1 63.27 ? O2' ADP 802 C 1 HETATM 17 C C1' ADP . . . L 3 161.88 184.669 160.243 1 63.27 ? C1' ADP 802 C 1 HETATM 18 N N9 ADP . . . L 3 161.395 186.029 160.509 1 63.27 ? N9 ADP 802 C 1 HETATM 19 C C8 ADP . . . L 3 160.134 186.371 160.797 1 63.27 ? C8 ADP 802 C 1 HETATM 20 N N7 ADP . . . L 3 160.031 187.704 160.982 1 63.27 ? N7 ADP 802 C 1 HETATM 21 C C5 ADP . . . L 3 161.254 188.219 160.817 1 63.27 ? C5 ADP 802 C 1 HETATM 22 C C6 ADP . . . L 3 161.849 189.555 160.875 1 63.27 ? C6 ADP 802 C 1 HETATM 23 N N6 ADP . . . L 3 161.088 190.632 161.154 1 63.27 ? N6 ADP 802 C 1 HETATM 24 N N1 ADP . . . L 3 163.164 189.667 160.631 1 63.27 ? N1 ADP 802 C 1 HETATM 25 C C2 ADP . . . L 3 163.92 188.602 160.35 1 63.27 ? C2 ADP 802 C 1 HETATM 26 N N3 ADP . . . L 3 163.447 187.359 160.284 1 63.27 ? N3 ADP 802 C 1 HETATM 27 C C4 ADP . . . L 3 162.146 187.115 160.502 1 63.27 ? C4 ADP 802 C 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #