data_7K3Z # _model_server_result.job_id reNHD3WXKtfDCDreDsAxxw _model_server_result.datetime_utc '2024-10-19 09:32:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k3z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":701}' # _entry.id 7K3Z # _exptl.entry_id 7K3Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7K3Z _cell.length_a 281.498 _cell.length_b 281.498 _cell.length_c 298.827 _cell.Z_PDB 84 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K3Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall 'P 6c 2c' _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 H N N ? 2 J N N ? 2 L N N ? 2 N N N ? 2 P N N ? 2 R N N ? 2 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 89 A ASP 153 1_555 H MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc2 H MG MG . A MG 701 1_555 I O3G ATP . A ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc3 H MG MG . A MG 701 1_555 I O2A ATP . A ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc4 H MG MG . A MG 701 1_555 I O1B ATP . A ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc5 J MG MG . B MG 701 1_555 K O3G ATP . B ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc6 J MG MG . B MG 701 1_555 K O1B ATP . B ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.977 ? metalc ? metalc7 J MG MG . B MG 701 1_555 K O2A ATP . B ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc8 C OD1 ASP 89 C ASP 153 1_555 L MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc9 L MG MG . C MG 701 1_555 M O1B ATP . C ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc10 L MG MG . C MG 701 1_555 M O2A ATP . C ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc11 L MG MG . C MG 701 1_555 M O3G ATP . C ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc12 N MG MG . D MG 701 1_555 O O3G ATP . D ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc13 N MG MG . D MG 701 1_555 O O1B ATP . D ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc14 N MG MG . D MG 701 1_555 O O2A ATP . D ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc15 E OD1 ASP 89 E ASP 153 1_555 P MG MG . E MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc16 E OD1 ASN 155 E ASN 219 1_555 P MG MG . E MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc17 P MG MG . E MG 701 1_555 Q O1B ATP . E ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc18 P MG MG . E MG 701 1_555 Q O3G ATP . E ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc19 P MG MG . E MG 701 1_555 Q O2A ATP . E ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? metalc ? metalc20 R MG MG . F MG 701 1_555 S O3G ATP . F ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc21 T MG MG . G MG 701 1_555 U O3G ATP . G ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc22 T MG MG . G MG 701 1_555 U O1B ATP . G ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? metalc ? metalc23 T MG MG . G MG 701 1_555 U O2A ATP . G ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7K3Z _atom_sites.fract_transf_matrix[1][1] 0.003552 _atom_sites.fract_transf_matrix[1][2] 0.002051 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004102 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 MG A 1 701 701 MG MG . I 3 ATP A 1 702 702 ATP ATP . J 2 MG B 1 701 701 MG MG . K 3 ATP B 1 702 702 ATP ATP . L 2 MG C 1 701 701 MG MG . M 3 ATP C 1 702 702 ATP ATP . N 2 MG D 1 701 701 MG MG . O 3 ATP D 1 702 702 ATP ATP . P 2 MG E 1 701 701 MG MG . Q 3 ATP E 1 702 702 ATP ATP . R 2 MG F 1 701 701 MG MG . S 3 ATP F 1 702 702 ATP ATP . T 2 MG G 1 701 701 MG MG . U 3 ATP G 1 702 702 ATP ATP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 2 _atom_site.Cartn_x 80.883 _atom_site.Cartn_y -58.546 _atom_site.Cartn_z 27.478 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 97.63 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 701 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 109 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 66 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #