data_7K3Z # _model_server_result.job_id Q7UF90F4Tgz0fokyPurceQ _model_server_result.datetime_utc '2024-10-19 09:31:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k3z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":702}' # _entry.id 7K3Z # _exptl.entry_id 7K3Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7K3Z _cell.length_a 281.498 _cell.length_b 281.498 _cell.length_c 298.827 _cell.Z_PDB 84 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K3Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall 'P 6c 2c' _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 K N N ? 3 M N N ? 3 O N N ? 3 Q N N ? 3 S N N ? 3 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 89 A ASP 153 1_555 H MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc2 H MG MG . A MG 701 1_555 I O3G ATP . A ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc3 H MG MG . A MG 701 1_555 I O2A ATP . A ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc4 H MG MG . A MG 701 1_555 I O1B ATP . A ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc5 J MG MG . B MG 701 1_555 K O3G ATP . B ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc6 J MG MG . B MG 701 1_555 K O1B ATP . B ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.977 ? metalc ? metalc7 J MG MG . B MG 701 1_555 K O2A ATP . B ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc8 C OD1 ASP 89 C ASP 153 1_555 L MG MG . C MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc9 L MG MG . C MG 701 1_555 M O1B ATP . C ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? metalc ? metalc10 L MG MG . C MG 701 1_555 M O2A ATP . C ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc11 L MG MG . C MG 701 1_555 M O3G ATP . C ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.655 ? metalc ? metalc12 N MG MG . D MG 701 1_555 O O3G ATP . D ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc13 N MG MG . D MG 701 1_555 O O1B ATP . D ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? metalc ? metalc14 N MG MG . D MG 701 1_555 O O2A ATP . D ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc15 E OD1 ASP 89 E ASP 153 1_555 P MG MG . E MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc16 E OD1 ASN 155 E ASN 219 1_555 P MG MG . E MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? metalc ? metalc17 P MG MG . E MG 701 1_555 Q O1B ATP . E ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc18 P MG MG . E MG 701 1_555 Q O3G ATP . E ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc19 P MG MG . E MG 701 1_555 Q O2A ATP . E ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? metalc ? metalc20 R MG MG . F MG 701 1_555 S O3G ATP . F ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc21 T MG MG . G MG 701 1_555 U O3G ATP . G ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? metalc ? metalc22 T MG MG . G MG 701 1_555 U O1B ATP . G ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? metalc ? metalc23 T MG MG . G MG 701 1_555 U O2A ATP . G ATP 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7K3Z _atom_sites.fract_transf_matrix[1][1] 0.003552 _atom_sites.fract_transf_matrix[1][2] 0.002051 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004102 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 MG A 1 701 701 MG MG . I 3 ATP A 1 702 702 ATP ATP . J 2 MG B 1 701 701 MG MG . K 3 ATP B 1 702 702 ATP ATP . L 2 MG C 1 701 701 MG MG . M 3 ATP C 1 702 702 ATP ATP . N 2 MG D 1 701 701 MG MG . O 3 ATP D 1 702 702 ATP ATP . P 2 MG E 1 701 701 MG MG . Q 3 ATP E 1 702 702 ATP ATP . R 2 MG F 1 701 701 MG MG . S 3 ATP F 1 702 702 ATP ATP . T 2 MG G 1 701 701 MG MG . U 3 ATP G 1 702 702 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . Q 3 60.982 -152.628 25.887 1 204.15 ? PG ATP 702 E 1 HETATM 2 O O1G ATP . . . Q 3 62.005 -151.901 25.047 1 210.34 ? O1G ATP 702 E 1 HETATM 3 O O2G ATP . . . Q 3 60.072 -151.727 26.684 1 187.75 ? O2G ATP 702 E 1 HETATM 4 O O3G ATP . . . Q 3 61.548 -153.778 26.685 1 202.24 ? O3G ATP 702 E 1 HETATM 5 P PB ATP . . . Q 3 60.43 -154.623 23.989 1 121.6 ? PB ATP 702 E 1 HETATM 6 O O1B ATP . . . Q 3 60.787 -155.704 24.981 1 143.54 ? O1B ATP 702 E 1 HETATM 7 O O2B ATP . . . Q 3 59.37 -154.888 22.947 1 90.77 ? O2B ATP 702 E 1 HETATM 8 O O3B ATP . . . Q 3 60 -153.299 24.799 1 146.75 ? O3B ATP 702 E 1 HETATM 9 P PA ATP . . . Q 3 63.054 -155.046 22.984 1 150.75 ? PA ATP 702 E 1 HETATM 10 O O1A ATP . . . Q 3 64.021 -154.256 22.135 1 168.45 ? O1A ATP 702 E 1 HETATM 11 O O2A ATP . . . Q 3 63.529 -155.587 24.312 1 139.36 ? O2A ATP 702 E 1 HETATM 12 O O3A ATP . . . Q 3 61.752 -154.122 23.215 1 128.7 ? O3A ATP 702 E 1 HETATM 13 O O5' ATP . . . Q 3 62.537 -156.29 22.1 1 105.03 ? O5' ATP 702 E 1 HETATM 14 C C5' ATP . . . Q 3 61.996 -157.447 22.733 1 133.41 ? C5' ATP 702 E 1 HETATM 15 C C4' ATP . . . Q 3 61.597 -158.479 21.692 1 146.08 ? C4' ATP 702 E 1 HETATM 16 O O4' ATP . . . Q 3 62.771 -158.974 21.047 1 128.69 ? O4' ATP 702 E 1 HETATM 17 C C3' ATP . . . Q 3 60.902 -159.658 22.351 1 139.5 ? C3' ATP 702 E 1 HETATM 18 O O3' ATP . . . Q 3 59.561 -159.768 21.866 1 172.74 ? O3' ATP 702 E 1 HETATM 19 C C2' ATP . . . Q 3 61.695 -160.889 21.965 1 93.64 ? C2' ATP 702 E 1 HETATM 20 O O2' ATP . . . Q 3 60.825 -161.827 21.333 1 130.45 ? O2' ATP 702 E 1 HETATM 21 C C1' ATP . . . Q 3 62.759 -160.401 20.993 1 103.07 ? C1' ATP 702 E 1 HETATM 22 N N9 ATP . . . Q 3 64.09 -160.941 21.37 1 99.85 ? N9 ATP 702 E 1 HETATM 23 C C8 ATP . . . Q 3 64.656 -160.862 22.588 1 98.83 ? C8 ATP 702 E 1 HETATM 24 N N7 ATP . . . Q 3 65.871 -161.468 22.605 1 107.8 ? N7 ATP 702 E 1 HETATM 25 C C5 ATP . . . Q 3 66.095 -161.959 21.372 1 77.5 ? C5 ATP 702 E 1 HETATM 26 C C6 ATP . . . Q 3 67.184 -162.71 20.704 1 98.35 ? C6 ATP 702 E 1 HETATM 27 N N6 ATP . . . Q 3 68.304 -163.066 21.377 1 140.34 ? N6 ATP 702 E 1 HETATM 28 N N1 ATP . . . Q 3 67.022 -163.027 19.4 1 82.49 ? N1 ATP 702 E 1 HETATM 29 C C2 ATP . . . Q 3 65.913 -162.678 18.722 1 114.7 ? C2 ATP 702 E 1 HETATM 30 N N3 ATP . . . Q 3 64.887 -161.996 19.265 1 68.64 ? N3 ATP 702 E 1 HETATM 31 C C4 ATP . . . Q 3 64.914 -161.618 20.565 1 82.29 ? C4 ATP 702 E 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 31 #