data_7K41 # _model_server_result.job_id lsroggyGF7hVhXJ5gp_Q1Q _model_server_result.datetime_utc '2025-01-10 16:27:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k41 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2602}' # _entry.id 7K41 # _exptl.entry_id 7K41 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 296.41 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(4-methylpiperidin-1-yl)-N-(2-phenylethyl)pyrimidin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.693 _cell.angle_gamma 90 _cell.entry_id 7K41 _cell.length_a 188.771 _cell.length_b 52.646 _cell.length_c 84.464 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K41 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H24 N4' _chem_comp.formula_weight 296.41 _chem_comp.id VUA _chem_comp.mon_nstd_flag . _chem_comp.name 4-(4-methylpiperidin-1-yl)-N-(2-phenylethyl)pyrimidin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C15 VUA sing 391 n n C15 C12 VUA sing 392 n n C15 C11 VUA sing 393 n n C12 C14 VUA sing 394 n n C11 C13 VUA sing 395 n n C14 N3 VUA sing 396 n n C13 N3 VUA sing 397 n n C3 C5 VUA doub 398 n y C3 C1 VUA sing 399 n y N3 C9 VUA sing 400 n n C5 C8 VUA sing 401 n y C1 C2 VUA doub 402 n y C9 N2 VUA doub 403 n y C9 C6 VUA sing 404 n y N2 C10 VUA sing 405 n y C8 C17 VUA sing 406 n n C8 C4 VUA doub 407 n y C2 C4 VUA sing 408 n y C6 C7 VUA doub 409 n y C18 C17 VUA sing 410 n n C18 N4 VUA sing 411 n n C10 N4 VUA sing 412 n n C10 N1 VUA doub 413 n y C7 N1 VUA sing 414 n y C4 H1 VUA sing 415 n n C5 H2 VUA sing 416 n n C6 H3 VUA sing 417 n n C7 H4 VUA sing 418 n n C13 H5 VUA sing 419 n n C13 H6 VUA sing 420 n n C15 H7 VUA sing 421 n n C17 H8 VUA sing 422 n n C17 H9 VUA sing 423 n n C1 H10 VUA sing 424 n n C2 H11 VUA sing 425 n n C3 H12 VUA sing 426 n n C11 H13 VUA sing 427 n n C11 H14 VUA sing 428 n n C12 H15 VUA sing 429 n n C12 H16 VUA sing 430 n n C14 H17 VUA sing 431 n n C14 H18 VUA sing 432 n n C16 H19 VUA sing 433 n n C16 H20 VUA sing 434 n n C16 H21 VUA sing 435 n n C18 H22 VUA sing 436 n n C18 H23 VUA sing 437 n n N4 H24 VUA sing 438 n n # _atom_sites.entry_id 7K41 _atom_sites.fract_transf_matrix[1][1] 0.005297 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000905 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018995 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012011 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 2601 2601 ACT ACT . C 3 VUA A 1 2602 2701 VUA LIG . D 4 EDO A 1 2603 2801 EDO EDO . E 4 EDO A 1 2604 2901 EDO EDO . F 4 EDO A 1 2605 3001 EDO EDO . G 4 EDO A 1 2606 3101 EDO EDO . H 4 EDO A 1 2607 3201 EDO EDO . I 4 EDO A 1 2608 3301 EDO EDO . J 4 EDO A 1 2609 3401 EDO EDO . K 4 EDO A 1 2610 3501 EDO EDO . L 4 EDO A 1 2611 3601 EDO EDO . M 2 ACT A 1 2612 3701 ACT ACT . N 4 EDO A 1 2613 3801 EDO EDO . O 5 HOH A 1 2701 61 HOH HOH . O 5 HOH A 2 2702 70 HOH HOH . O 5 HOH A 3 2703 85 HOH HOH . O 5 HOH A 4 2704 83 HOH HOH . O 5 HOH A 5 2705 90 HOH HOH . O 5 HOH A 6 2706 99 HOH HOH . O 5 HOH A 7 2707 172 HOH HOH . O 5 HOH A 8 2708 170 HOH HOH . O 5 HOH A 9 2709 54 HOH HOH . O 5 HOH A 10 2710 95 HOH HOH . O 5 HOH A 11 2711 31 HOH HOH . O 5 HOH A 12 2712 30 HOH HOH . O 5 HOH A 13 2713 89 HOH HOH . O 5 HOH A 14 2714 161 HOH HOH . O 5 HOH A 15 2715 46 HOH HOH . O 5 HOH A 16 2716 81 HOH HOH . O 5 HOH A 17 2717 4 HOH HOH . O 5 HOH A 18 2718 5 HOH HOH . O 5 HOH A 19 2719 44 HOH HOH . O 5 HOH A 20 2720 14 HOH HOH . O 5 HOH A 21 2721 45 HOH HOH . O 5 HOH A 22 2722 22 HOH HOH . O 5 HOH A 23 2723 140 HOH HOH . O 5 HOH A 24 2724 105 HOH HOH . O 5 HOH A 25 2725 132 HOH HOH . O 5 HOH A 26 2726 16 HOH HOH . O 5 HOH A 27 2727 149 HOH HOH . O 5 HOH A 28 2728 29 HOH HOH . O 5 HOH A 29 2729 110 HOH HOH . O 5 HOH A 30 2730 52 HOH HOH . O 5 HOH A 31 2731 39 HOH HOH . O 5 HOH A 32 2732 18 HOH HOH . O 5 HOH A 33 2733 148 HOH HOH . O 5 HOH A 34 2734 168 HOH HOH . O 5 HOH A 35 2735 64 HOH HOH . O 5 HOH A 36 2736 100 HOH HOH . O 5 HOH A 37 2737 94 HOH HOH . O 5 HOH A 38 2738 34 HOH HOH . O 5 HOH A 39 2739 166 HOH HOH . O 5 HOH A 40 2740 173 HOH HOH . O 5 HOH A 41 2741 157 HOH HOH . O 5 HOH A 42 2742 86 HOH HOH . O 5 HOH A 43 2743 43 HOH HOH . O 5 HOH A 44 2744 75 HOH HOH . O 5 HOH A 45 2745 146 HOH HOH . O 5 HOH A 46 2746 35 HOH HOH . O 5 HOH A 47 2747 135 HOH HOH . O 5 HOH A 48 2748 158 HOH HOH . O 5 HOH A 49 2749 164 HOH HOH . O 5 HOH A 50 2750 127 HOH HOH . O 5 HOH A 51 2751 79 HOH HOH . O 5 HOH A 52 2752 77 HOH HOH . O 5 HOH A 53 2753 134 HOH HOH . O 5 HOH A 54 2754 63 HOH HOH . O 5 HOH A 55 2755 27 HOH HOH . O 5 HOH A 56 2756 17 HOH HOH . O 5 HOH A 57 2757 91 HOH HOH . O 5 HOH A 58 2758 20 HOH HOH . O 5 HOH A 59 2759 160 HOH HOH . O 5 HOH A 60 2760 11 HOH HOH . O 5 HOH A 61 2761 66 HOH HOH . O 5 HOH A 62 2762 162 HOH HOH . O 5 HOH A 63 2763 107 HOH HOH . O 5 HOH A 64 2764 72 HOH HOH . O 5 HOH A 65 2765 24 HOH HOH . O 5 HOH A 66 2766 163 HOH HOH . O 5 HOH A 67 2767 101 HOH HOH . O 5 HOH A 68 2768 73 HOH HOH . O 5 HOH A 69 2769 57 HOH HOH . O 5 HOH A 70 2770 76 HOH HOH . O 5 HOH A 71 2771 62 HOH HOH . O 5 HOH A 72 2772 8 HOH HOH . O 5 HOH A 73 2773 3 HOH HOH . O 5 HOH A 74 2774 48 HOH HOH . O 5 HOH A 75 2775 40 HOH HOH . O 5 HOH A 76 2776 71 HOH HOH . O 5 HOH A 77 2777 12 HOH HOH . O 5 HOH A 78 2778 80 HOH HOH . O 5 HOH A 79 2779 165 HOH HOH . O 5 HOH A 80 2780 41 HOH HOH . O 5 HOH A 81 2781 47 HOH HOH . O 5 HOH A 82 2782 120 HOH HOH . O 5 HOH A 83 2783 23 HOH HOH . O 5 HOH A 84 2784 37 HOH HOH . O 5 HOH A 85 2785 13 HOH HOH . O 5 HOH A 86 2786 108 HOH HOH . O 5 HOH A 87 2787 133 HOH HOH . O 5 HOH A 88 2788 19 HOH HOH . O 5 HOH A 89 2789 98 HOH HOH . O 5 HOH A 90 2790 51 HOH HOH . O 5 HOH A 91 2791 9 HOH HOH . O 5 HOH A 92 2792 56 HOH HOH . O 5 HOH A 93 2793 58 HOH HOH . O 5 HOH A 94 2794 10 HOH HOH . O 5 HOH A 95 2795 139 HOH HOH . O 5 HOH A 96 2796 174 HOH HOH . O 5 HOH A 97 2797 124 HOH HOH . O 5 HOH A 98 2798 111 HOH HOH . O 5 HOH A 99 2799 169 HOH HOH . O 5 HOH A 100 2800 84 HOH HOH . O 5 HOH A 101 2801 88 HOH HOH . O 5 HOH A 102 2802 7 HOH HOH . O 5 HOH A 103 2803 96 HOH HOH . O 5 HOH A 104 2804 103 HOH HOH . O 5 HOH A 105 2805 2 HOH HOH . O 5 HOH A 106 2806 69 HOH HOH . O 5 HOH A 107 2807 116 HOH HOH . O 5 HOH A 108 2808 33 HOH HOH . O 5 HOH A 109 2809 60 HOH HOH . O 5 HOH A 110 2810 153 HOH HOH . O 5 HOH A 111 2811 74 HOH HOH . O 5 HOH A 112 2812 144 HOH HOH . O 5 HOH A 113 2813 129 HOH HOH . O 5 HOH A 114 2814 151 HOH HOH . O 5 HOH A 115 2815 15 HOH HOH . O 5 HOH A 116 2816 26 HOH HOH . O 5 HOH A 117 2817 36 HOH HOH . O 5 HOH A 118 2818 32 HOH HOH . O 5 HOH A 119 2819 155 HOH HOH . O 5 HOH A 120 2820 143 HOH HOH . O 5 HOH A 121 2821 106 HOH HOH . O 5 HOH A 122 2822 126 HOH HOH . O 5 HOH A 123 2823 21 HOH HOH . O 5 HOH A 124 2824 137 HOH HOH . O 5 HOH A 125 2825 25 HOH HOH . O 5 HOH A 126 2826 142 HOH HOH . O 5 HOH A 127 2827 154 HOH HOH . O 5 HOH A 128 2828 59 HOH HOH . O 5 HOH A 129 2829 49 HOH HOH . O 5 HOH A 130 2830 131 HOH HOH . O 5 HOH A 131 2831 93 HOH HOH . O 5 HOH A 132 2832 147 HOH HOH . O 5 HOH A 133 2833 167 HOH HOH . O 5 HOH A 134 2834 128 HOH HOH . O 5 HOH A 135 2835 125 HOH HOH . O 5 HOH A 136 2836 136 HOH HOH . O 5 HOH A 137 2837 156 HOH HOH . O 5 HOH A 138 2838 97 HOH HOH . O 5 HOH A 139 2839 138 HOH HOH . O 5 HOH A 140 2840 123 HOH HOH . O 5 HOH A 141 2841 102 HOH HOH . O 5 HOH A 142 2842 152 HOH HOH . O 5 HOH A 143 2843 159 HOH HOH . O 5 HOH A 144 2844 130 HOH HOH . O 5 HOH A 145 2845 171 HOH HOH . O 5 HOH A 146 2846 65 HOH HOH . O 5 HOH A 147 2847 150 HOH HOH . O 5 HOH A 148 2848 109 HOH HOH . O 5 HOH A 149 2849 141 HOH HOH . O 5 HOH A 150 2850 113 HOH HOH . O 5 HOH A 151 2851 112 HOH HOH . O 5 HOH A 152 2852 118 HOH HOH . O 5 HOH A 153 2853 145 HOH HOH . O 5 HOH A 154 2854 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 VUA . . . C 3 -8.664 -10.998 12.805 1 42.27 ? N1 VUA 2602 A 1 HETATM 2 N N3 VUA . . . C 3 -8.79 -11.949 8.837 1 47.42 ? N3 VUA 2602 A 1 HETATM 3 C C4 VUA . . . C 3 -5.224 -10.303 11.564 1 50.08 ? C4 VUA 2602 A 1 HETATM 4 C C5 VUA . . . C 3 -5.325 -9.313 9.4 1 49.84 ? C5 VUA 2602 A 1 HETATM 5 C C6 VUA . . . C 3 -9.055 -12.619 11.118 1 44.3 ? C6 VUA 2602 A 1 HETATM 6 C C7 VUA . . . C 3 -9.001 -12.235 12.433 1 42.69 ? C7 VUA 2602 A 1 HETATM 7 C C8 VUA . . . C 3 -5.499 -9.205 10.768 1 48.08 ? C8 VUA 2602 A 1 HETATM 8 C C10 VUA . . . C 3 -8.368 -10.102 11.863 1 42.23 ? C10 VUA 2602 A 1 HETATM 9 C C13 VUA . . . C 3 -9.129 -13.266 8.296 1 47.74 ? C13 VUA 2602 A 1 HETATM 10 C C15 VUA . . . C 3 -10.141 -11.984 6.378 1 47.83 ? C15 VUA 2602 A 1 HETATM 11 C C17 VUA . . . C 3 -5.998 -7.933 11.387 1 44.13 ? C17 VUA 2602 A 1 HETATM 12 C C1 VUA . . . C 3 -4.619 -11.581 9.613 1 55.79 ? C1 VUA 2602 A 1 HETATM 13 C C2 VUA . . . C 3 -4.785 -11.482 10.991 1 53.95 ? C2 VUA 2602 A 1 HETATM 14 C C3 VUA . . . C 3 -4.891 -10.488 8.814 1 53.55 ? C3 VUA 2602 A 1 HETATM 15 C C9 VUA . . . C 3 -8.755 -11.629 10.207 1 45.1 ? C9 VUA 2602 A 1 HETATM 16 C C11 VUA . . . C 3 -10.324 -13.108 7.38 1 47.74 ? C11 VUA 2602 A 1 HETATM 17 C C12 VUA . . . C 3 -9.779 -10.693 7.074 1 46.38 ? C12 VUA 2602 A 1 HETATM 18 C C14 VUA . . . C 3 -8.488 -10.931 7.844 1 47.65 ? C14 VUA 2602 A 1 HETATM 19 C C16 VUA . . . C 3 -11.415 -11.755 5.635 1 46.63 ? C16 VUA 2602 A 1 HETATM 20 C C18 VUA . . . C 3 -7.544 -7.905 11.344 1 42.1 ? C18 VUA 2602 A 1 HETATM 21 N N2 VUA . . . C 3 -8.42 -10.38 10.55 1 44 ? N2 VUA 2602 A 1 HETATM 22 N N4 VUA . . . C 3 -7.991 -8.846 12.342 1 40.51 ? N4 VUA 2602 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 120 _model_server_stats.create_model_time_ms 96 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 22 #