data_7K41 # _model_server_result.job_id vs7JYRZdepTQZWPbfeXT_Q _model_server_result.datetime_utc '2025-01-10 16:21:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k41 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":2613}' # _entry.id 7K41 # _exptl.entry_id 7K41 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.693 _cell.angle_gamma 90 _cell.entry_id 7K41 _cell.length_a 188.771 _cell.length_b 52.646 _cell.length_c 84.464 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K41 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 N N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 89 n n C1 C2 EDO sing 90 n n C1 H11 EDO sing 91 n n C1 H12 EDO sing 92 n n O1 HO1 EDO sing 93 n n C2 O2 EDO sing 94 n n C2 H21 EDO sing 95 n n C2 H22 EDO sing 96 n n O2 HO2 EDO sing 97 n n # _atom_sites.entry_id 7K41 _atom_sites.fract_transf_matrix[1][1] 0.005297 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000905 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018995 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012011 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 2601 2601 ACT ACT . C 3 VUA A 1 2602 2701 VUA LIG . D 4 EDO A 1 2603 2801 EDO EDO . E 4 EDO A 1 2604 2901 EDO EDO . F 4 EDO A 1 2605 3001 EDO EDO . G 4 EDO A 1 2606 3101 EDO EDO . H 4 EDO A 1 2607 3201 EDO EDO . I 4 EDO A 1 2608 3301 EDO EDO . J 4 EDO A 1 2609 3401 EDO EDO . K 4 EDO A 1 2610 3501 EDO EDO . L 4 EDO A 1 2611 3601 EDO EDO . M 2 ACT A 1 2612 3701 ACT ACT . N 4 EDO A 1 2613 3801 EDO EDO . O 5 HOH A 1 2701 61 HOH HOH . O 5 HOH A 2 2702 70 HOH HOH . O 5 HOH A 3 2703 85 HOH HOH . O 5 HOH A 4 2704 83 HOH HOH . O 5 HOH A 5 2705 90 HOH HOH . O 5 HOH A 6 2706 99 HOH HOH . O 5 HOH A 7 2707 172 HOH HOH . O 5 HOH A 8 2708 170 HOH HOH . O 5 HOH A 9 2709 54 HOH HOH . O 5 HOH A 10 2710 95 HOH HOH . O 5 HOH A 11 2711 31 HOH HOH . O 5 HOH A 12 2712 30 HOH HOH . O 5 HOH A 13 2713 89 HOH HOH . O 5 HOH A 14 2714 161 HOH HOH . O 5 HOH A 15 2715 46 HOH HOH . O 5 HOH A 16 2716 81 HOH HOH . O 5 HOH A 17 2717 4 HOH HOH . O 5 HOH A 18 2718 5 HOH HOH . O 5 HOH A 19 2719 44 HOH HOH . O 5 HOH A 20 2720 14 HOH HOH . O 5 HOH A 21 2721 45 HOH HOH . O 5 HOH A 22 2722 22 HOH HOH . O 5 HOH A 23 2723 140 HOH HOH . O 5 HOH A 24 2724 105 HOH HOH . O 5 HOH A 25 2725 132 HOH HOH . O 5 HOH A 26 2726 16 HOH HOH . O 5 HOH A 27 2727 149 HOH HOH . O 5 HOH A 28 2728 29 HOH HOH . O 5 HOH A 29 2729 110 HOH HOH . O 5 HOH A 30 2730 52 HOH HOH . O 5 HOH A 31 2731 39 HOH HOH . O 5 HOH A 32 2732 18 HOH HOH . O 5 HOH A 33 2733 148 HOH HOH . O 5 HOH A 34 2734 168 HOH HOH . O 5 HOH A 35 2735 64 HOH HOH . O 5 HOH A 36 2736 100 HOH HOH . O 5 HOH A 37 2737 94 HOH HOH . O 5 HOH A 38 2738 34 HOH HOH . O 5 HOH A 39 2739 166 HOH HOH . O 5 HOH A 40 2740 173 HOH HOH . O 5 HOH A 41 2741 157 HOH HOH . O 5 HOH A 42 2742 86 HOH HOH . O 5 HOH A 43 2743 43 HOH HOH . O 5 HOH A 44 2744 75 HOH HOH . O 5 HOH A 45 2745 146 HOH HOH . O 5 HOH A 46 2746 35 HOH HOH . O 5 HOH A 47 2747 135 HOH HOH . O 5 HOH A 48 2748 158 HOH HOH . O 5 HOH A 49 2749 164 HOH HOH . O 5 HOH A 50 2750 127 HOH HOH . O 5 HOH A 51 2751 79 HOH HOH . O 5 HOH A 52 2752 77 HOH HOH . O 5 HOH A 53 2753 134 HOH HOH . O 5 HOH A 54 2754 63 HOH HOH . O 5 HOH A 55 2755 27 HOH HOH . O 5 HOH A 56 2756 17 HOH HOH . O 5 HOH A 57 2757 91 HOH HOH . O 5 HOH A 58 2758 20 HOH HOH . O 5 HOH A 59 2759 160 HOH HOH . O 5 HOH A 60 2760 11 HOH HOH . O 5 HOH A 61 2761 66 HOH HOH . O 5 HOH A 62 2762 162 HOH HOH . O 5 HOH A 63 2763 107 HOH HOH . O 5 HOH A 64 2764 72 HOH HOH . O 5 HOH A 65 2765 24 HOH HOH . O 5 HOH A 66 2766 163 HOH HOH . O 5 HOH A 67 2767 101 HOH HOH . O 5 HOH A 68 2768 73 HOH HOH . O 5 HOH A 69 2769 57 HOH HOH . O 5 HOH A 70 2770 76 HOH HOH . O 5 HOH A 71 2771 62 HOH HOH . O 5 HOH A 72 2772 8 HOH HOH . O 5 HOH A 73 2773 3 HOH HOH . O 5 HOH A 74 2774 48 HOH HOH . O 5 HOH A 75 2775 40 HOH HOH . O 5 HOH A 76 2776 71 HOH HOH . O 5 HOH A 77 2777 12 HOH HOH . O 5 HOH A 78 2778 80 HOH HOH . O 5 HOH A 79 2779 165 HOH HOH . O 5 HOH A 80 2780 41 HOH HOH . O 5 HOH A 81 2781 47 HOH HOH . O 5 HOH A 82 2782 120 HOH HOH . O 5 HOH A 83 2783 23 HOH HOH . O 5 HOH A 84 2784 37 HOH HOH . O 5 HOH A 85 2785 13 HOH HOH . O 5 HOH A 86 2786 108 HOH HOH . O 5 HOH A 87 2787 133 HOH HOH . O 5 HOH A 88 2788 19 HOH HOH . O 5 HOH A 89 2789 98 HOH HOH . O 5 HOH A 90 2790 51 HOH HOH . O 5 HOH A 91 2791 9 HOH HOH . O 5 HOH A 92 2792 56 HOH HOH . O 5 HOH A 93 2793 58 HOH HOH . O 5 HOH A 94 2794 10 HOH HOH . O 5 HOH A 95 2795 139 HOH HOH . O 5 HOH A 96 2796 174 HOH HOH . O 5 HOH A 97 2797 124 HOH HOH . O 5 HOH A 98 2798 111 HOH HOH . O 5 HOH A 99 2799 169 HOH HOH . O 5 HOH A 100 2800 84 HOH HOH . O 5 HOH A 101 2801 88 HOH HOH . O 5 HOH A 102 2802 7 HOH HOH . O 5 HOH A 103 2803 96 HOH HOH . O 5 HOH A 104 2804 103 HOH HOH . O 5 HOH A 105 2805 2 HOH HOH . O 5 HOH A 106 2806 69 HOH HOH . O 5 HOH A 107 2807 116 HOH HOH . O 5 HOH A 108 2808 33 HOH HOH . O 5 HOH A 109 2809 60 HOH HOH . O 5 HOH A 110 2810 153 HOH HOH . O 5 HOH A 111 2811 74 HOH HOH . O 5 HOH A 112 2812 144 HOH HOH . O 5 HOH A 113 2813 129 HOH HOH . O 5 HOH A 114 2814 151 HOH HOH . O 5 HOH A 115 2815 15 HOH HOH . O 5 HOH A 116 2816 26 HOH HOH . O 5 HOH A 117 2817 36 HOH HOH . O 5 HOH A 118 2818 32 HOH HOH . O 5 HOH A 119 2819 155 HOH HOH . O 5 HOH A 120 2820 143 HOH HOH . O 5 HOH A 121 2821 106 HOH HOH . O 5 HOH A 122 2822 126 HOH HOH . O 5 HOH A 123 2823 21 HOH HOH . O 5 HOH A 124 2824 137 HOH HOH . O 5 HOH A 125 2825 25 HOH HOH . O 5 HOH A 126 2826 142 HOH HOH . O 5 HOH A 127 2827 154 HOH HOH . O 5 HOH A 128 2828 59 HOH HOH . O 5 HOH A 129 2829 49 HOH HOH . O 5 HOH A 130 2830 131 HOH HOH . O 5 HOH A 131 2831 93 HOH HOH . O 5 HOH A 132 2832 147 HOH HOH . O 5 HOH A 133 2833 167 HOH HOH . O 5 HOH A 134 2834 128 HOH HOH . O 5 HOH A 135 2835 125 HOH HOH . O 5 HOH A 136 2836 136 HOH HOH . O 5 HOH A 137 2837 156 HOH HOH . O 5 HOH A 138 2838 97 HOH HOH . O 5 HOH A 139 2839 138 HOH HOH . O 5 HOH A 140 2840 123 HOH HOH . O 5 HOH A 141 2841 102 HOH HOH . O 5 HOH A 142 2842 152 HOH HOH . O 5 HOH A 143 2843 159 HOH HOH . O 5 HOH A 144 2844 130 HOH HOH . O 5 HOH A 145 2845 171 HOH HOH . O 5 HOH A 146 2846 65 HOH HOH . O 5 HOH A 147 2847 150 HOH HOH . O 5 HOH A 148 2848 109 HOH HOH . O 5 HOH A 149 2849 141 HOH HOH . O 5 HOH A 150 2850 113 HOH HOH . O 5 HOH A 151 2851 112 HOH HOH . O 5 HOH A 152 2852 118 HOH HOH . O 5 HOH A 153 2853 145 HOH HOH . O 5 HOH A 154 2854 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . N 4 -39.484 -2.971 22.256 1 64.39 ? C1 EDO 2613 A 1 HETATM 2 O O1 EDO . . . N 4 -39.089 -1.953 23.163 1 66.74 ? O1 EDO 2613 A 1 HETATM 3 C C2 EDO . . . N 4 -38.34 -3.738 21.689 1 62.82 ? C2 EDO 2613 A 1 HETATM 4 O O2 EDO . . . N 4 -37.637 -3.091 20.631 1 57.92 ? O2 EDO 2613 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #