data_7K4B
#
_model_server_result.job_id            Z3SP3zgcWLF0kY19LnZEcQ 
_model_server_result.datetime_utc      '2024-11-23 00:58:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7k4b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"DB","auth_seq_id":704}' 
#
_entry.id    7K4B 
#
_exptl.entry_id    7K4B 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7K4B 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7K4B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 R N N 
? 3 V N N 
? 3 Z N N 
? 3 AA N N 
? 3 PA N N 
? 3 DB N N 
? 3 GB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 542 A ASP 542 1_555 U CA CA . A CA 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? 
metalc ? metalc2 U CA CA . A CA 717 1_555 B OD1 ASP 542 B ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.052 ? 
metalc ? metalc3 U CA CA . A CA 717 1_555 C OD1 ASP 542 C ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.099 ? 
metalc ? metalc4 U CA CA . A CA 717 1_555 D OD1 ASP 542 D ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 569 n n 
CBA CAB Y01 sing 570 n n 
CBA CAN Y01 sing 571 n n 
CAN CAJ Y01 sing 572 n n 
CAJ CAO Y01 sing 573 n n 
CAO CBB Y01 sing 574 n n 
CBB CAC Y01 sing 575 n n 
CBB CBE Y01 sing 576 n n 
CBE CAP Y01 sing 577 n n 
CBE CBI Y01 sing 578 n n 
CAP CAQ Y01 sing 579 n n 
CAQ CBG Y01 sing 580 n n 
CBG CBI Y01 sing 581 n n 
CBG CBD Y01 sing 582 n n 
CBI CAE Y01 sing 583 n n 
CBI CAU Y01 sing 584 n n 
CAU CAS Y01 sing 585 n n 
CAS CBF Y01 sing 586 n n 
CBF CBD Y01 sing 587 n n 
CBF CBH Y01 sing 588 n n 
CBD CAK Y01 sing 589 n n 
CAK CAI Y01 sing 590 n n 
CAI CAZ Y01 doub 591 n n 
CAZ CAV Y01 sing 592 n n 
CAZ CBH Y01 sing 593 n n 
CAV CBC Y01 sing 594 n n 
CBH CAD Y01 sing 595 n n 
CBH CAT Y01 sing 596 n n 
CAT CAR Y01 sing 597 n n 
CAR CBC Y01 sing 598 n n 
CBC OAW Y01 sing 599 n n 
OAW CAY Y01 sing 600 n n 
CAY OAG Y01 doub 601 n n 
CAY CAM Y01 sing 602 n n 
CAM CAL Y01 sing 603 n n 
CAL CAX Y01 sing 604 n n 
CAX OAH Y01 sing 605 n n 
CAX OAF Y01 doub 606 n n 
CAA HAA1 Y01 sing 607 n n 
CAA HAA2 Y01 sing 608 n n 
CAA HAA3 Y01 sing 609 n n 
CBA HBA Y01 sing 610 n n 
CAB HAB1 Y01 sing 611 n n 
CAB HAB2 Y01 sing 612 n n 
CAB HAB3 Y01 sing 613 n n 
CAN HAN1 Y01 sing 614 n n 
CAN HAN2 Y01 sing 615 n n 
CAJ HAJ1 Y01 sing 616 n n 
CAJ HAJ2 Y01 sing 617 n n 
CAO HAO1 Y01 sing 618 n n 
CAO HAO2 Y01 sing 619 n n 
CBB HBB Y01 sing 620 n n 
CAC HAC1 Y01 sing 621 n n 
CAC HAC2 Y01 sing 622 n n 
CAC HAC3 Y01 sing 623 n n 
CBE HBE Y01 sing 624 n n 
CAP HAP1 Y01 sing 625 n n 
CAP HAP2 Y01 sing 626 n n 
CAQ HAQ1 Y01 sing 627 n n 
CAQ HAQ2 Y01 sing 628 n n 
CBG HBG Y01 sing 629 n n 
CBD HBD Y01 sing 630 n n 
CAE HAE1 Y01 sing 631 n n 
CAE HAE2 Y01 sing 632 n n 
CAE HAE3 Y01 sing 633 n n 
CAU HAU1 Y01 sing 634 n n 
CAU HAU2 Y01 sing 635 n n 
CAS HAS1 Y01 sing 636 n n 
CAS HAS2 Y01 sing 637 n n 
CBF HBF Y01 sing 638 n n 
CAK HAK1 Y01 sing 639 n n 
CAK HAK2 Y01 sing 640 n n 
CAI HAI Y01 sing 641 n n 
CAV HAV1 Y01 sing 642 n n 
CAV HAV2 Y01 sing 643 n n 
CBC HBC Y01 sing 644 n n 
CAD HAD1 Y01 sing 645 n n 
CAD HAD2 Y01 sing 646 n n 
CAD HAD3 Y01 sing 647 n n 
CAT HAT1 Y01 sing 648 n n 
CAT HAT2 Y01 sing 649 n n 
CAR HAR1 Y01 sing 650 n n 
CAR HAR2 Y01 sing 651 n n 
CAM HAM1 Y01 sing 652 n n 
CAM HAM2 Y01 sing 653 n n 
CAL HAL1 Y01 sing 654 n n 
CAL HAL2 Y01 sing 655 n n 
OAH HAH Y01 sing 656 n n 
#
_atom_sites.entry_id                     7K4B 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 VUG A 1 701 701 VUG CIS . 
F 3 Y01 A 1 702 801 Y01 Y01 . 
G 4 PCW A 1 703 804 PCW PCW . 
H 4 PCW A 1 704 805 PCW PCW . 
I 4 PCW A 1 705 809 PCW PCW . 
J 4 PCW A 1 706 810 PCW PCW . 
K 4 PCW A 1 707 813 PCW PCW . 
L 4 PCW A 1 708 814 PCW PCW . 
M 4 PCW A 1 709 815 PCW PCW . 
N 4 PCW A 1 710 806 PCW PCW . 
O 4 PCW A 1 711 811 PCW PCW . 
P 4 PCW A 1 712 812 PCW PCW . 
Q 2 VUG A 1 713 701 VUG CIS . 
R 3 Y01 A 1 714 803 Y01 Y01 . 
S 4 PCW A 1 715 807 PCW PCW . 
T 4 PCW A 1 716 808 PCW PCW . 
U 5 CA A 1 717 901 CA CA . 
V 3 Y01 B 1 701 803 Y01 Y01 . 
W 4 PCW B 1 702 807 PCW PCW . 
X 4 PCW B 1 703 808 PCW PCW . 
Y 2 VUG B 1 704 701 VUG CIS . 
Z 3 Y01 B 1 705 801 Y01 Y01 . 
AA 3 Y01 B 1 706 803 Y01 Y01 . 
BA 4 PCW B 1 707 804 PCW PCW . 
CA 4 PCW B 1 708 805 PCW PCW . 
DA 4 PCW B 1 709 809 PCW PCW . 
EA 4 PCW B 1 710 810 PCW PCW . 
FA 4 PCW B 1 711 813 PCW PCW . 
GA 4 PCW B 1 712 814 PCW PCW . 
HA 4 PCW B 1 713 815 PCW PCW . 
IA 4 PCW B 1 714 806 PCW PCW . 
JA 4 PCW B 1 715 811 PCW PCW . 
KA 4 PCW B 1 716 812 PCW PCW . 
LA 2 VUG B 1 717 701 VUG CIS . 
MA 4 PCW C 1 701 807 PCW PCW . 
NA 4 PCW C 1 702 808 PCW PCW . 
OA 2 VUG C 1 703 701 VUG CIS . 
PA 3 Y01 C 1 704 801 Y01 Y01 . 
QA 4 PCW C 1 705 804 PCW PCW . 
RA 4 PCW C 1 706 805 PCW PCW . 
SA 4 PCW C 1 707 809 PCW PCW . 
TA 4 PCW C 1 708 810 PCW PCW . 
UA 4 PCW C 1 709 813 PCW PCW . 
VA 4 PCW C 1 710 814 PCW PCW . 
WA 4 PCW C 1 711 815 PCW PCW . 
XA 4 PCW C 1 712 806 PCW PCW . 
YA 4 PCW C 1 713 811 PCW PCW . 
ZA 4 PCW C 1 714 812 PCW PCW . 
AB 4 PCW D 1 701 806 PCW PCW . 
BB 4 PCW D 1 702 811 PCW PCW . 
CB 4 PCW D 1 703 812 PCW PCW . 
DB 3 Y01 D 1 704 803 Y01 Y01 . 
EB 4 PCW D 1 705 807 PCW PCW . 
FB 4 PCW D 1 706 808 PCW PCW . 
GB 3 Y01 D 1 707 801 Y01 Y01 . 
HB 4 PCW D 1 708 804 PCW PCW . 
IB 4 PCW D 1 709 805 PCW PCW . 
JB 4 PCW D 1 710 809 PCW PCW . 
KB 4 PCW D 1 711 810 PCW PCW . 
LB 4 PCW D 1 712 813 PCW PCW . 
MB 4 PCW D 1 713 814 PCW PCW . 
NB 4 PCW D 1 714 815 PCW PCW . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . DB 3 118.799 90.692 88.859 1 25.49 ? CAA Y01 704 D 1 
HETATM 2 C CBA Y01 . . . DB 3 117.351 90.892 88.431 1 25.49 ? CBA Y01 704 D 1 
HETATM 3 C CAB Y01 . . . DB 3 116.556 91.568 89.539 1 25.49 ? CAB Y01 704 D 1 
HETATM 4 C CAN Y01 . . . DB 3 116.708 89.581 87.999 1 25.49 ? CAN Y01 704 D 1 
HETATM 5 C CAJ Y01 . . . DB 3 116.127 89.576 86.617 1 25.49 ? CAJ Y01 704 D 1 
HETATM 6 C CAO Y01 . . . DB 3 117.162 89.726 85.53 1 25.49 ? CAO Y01 704 D 1 
HETATM 7 C CBB Y01 . . . DB 3 116.599 89.515 84.12 1 25.49 ? CBB Y01 704 D 1 
HETATM 8 C CAC Y01 . . . DB 3 115.18 90.057 84.065 1 25.49 ? CAC Y01 704 D 1 
HETATM 9 C CBE Y01 . . . DB 3 117.502 90.132 83.041 1 25.49 ? CBE Y01 704 D 1 
HETATM 10 C CAP Y01 . . . DB 3 118.984 90.221 83.487 1 25.49 ? CAP Y01 704 D 1 
HETATM 11 C CAQ Y01 . . . DB 3 119.853 90.049 82.223 1 25.49 ? CAQ Y01 704 D 1 
HETATM 12 C CBG Y01 . . . DB 3 118.854 90.043 81.071 1 25.49 ? CBG Y01 704 D 1 
HETATM 13 C CBI Y01 . . . DB 3 117.581 89.416 81.664 1 25.49 ? CBI Y01 704 D 1 
HETATM 14 C CAE Y01 . . . DB 3 117.732 87.904 81.882 1 25.49 ? CAE Y01 704 D 1 
HETATM 15 C CAU Y01 . . . DB 3 116.457 89.706 80.667 1 25.49 ? CAU Y01 704 D 1 
HETATM 16 C CAS Y01 . . . DB 3 116.786 89.167 79.271 1 25.49 ? CAS Y01 704 D 1 
HETATM 17 C CBF Y01 . . . DB 3 118.135 89.651 78.719 1 25.49 ? CBF Y01 704 D 1 
HETATM 18 C CBD Y01 . . . DB 3 119.254 89.416 79.747 1 25.49 ? CBD Y01 704 D 1 
HETATM 19 C CAK Y01 . . . DB 3 120.568 89.981 79.229 1 25.49 ? CAK Y01 704 D 1 
HETATM 20 C CAI Y01 . . . DB 3 120.854 89.468 77.857 1 25.49 ? CAI Y01 704 D 1 
HETATM 21 C CAZ Y01 . . . DB 3 119.922 89.097 76.994 1 25.49 ? CAZ Y01 704 D 1 
HETATM 22 C CAV Y01 . . . DB 3 120.283 88.755 75.566 1 25.49 ? CAV Y01 704 D 1 
HETATM 23 C CBH Y01 . . . DB 3 118.436 89.031 77.327 1 25.49 ? CBH Y01 704 D 1 
HETATM 24 C CAD Y01 . . . DB 3 117.985 87.561 77.287 1 25.49 ? CAD Y01 704 D 1 
HETATM 25 C CAT Y01 . . . DB 3 117.675 89.835 76.247 1 25.49 ? CAT Y01 704 D 1 
HETATM 26 C CAR Y01 . . . DB 3 118.076 89.527 74.803 1 25.49 ? CAR Y01 704 D 1 
HETATM 27 C CBC Y01 . . . DB 3 119.561 89.664 74.606 1 25.49 ? CBC Y01 704 D 1 
HETATM 28 O OAW Y01 . . . DB 3 119.915 89.256 73.253 1 25.49 ? OAW Y01 704 D 1 
HETATM 29 C CAY Y01 . . . DB 3 120.228 90.208 72.381 1 25.49 ? CAY Y01 704 D 1 
HETATM 30 O OAG Y01 . . . DB 3 120.275 91.373 72.653 1 25.49 ? OAG Y01 704 D 1 
HETATM 31 C CAM Y01 . . . DB 3 120.513 89.651 71.019 1 25.49 ? CAM Y01 704 D 1 
HETATM 32 C CAL Y01 . . . DB 3 121.141 90.614 70.035 1 25.49 ? CAL Y01 704 D 1 
HETATM 33 C CAX Y01 . . . DB 3 122.42 90.107 69.395 1 25.49 ? CAX Y01 704 D 1 
HETATM 34 O OAH Y01 . . . DB 3 122.978 89.116 69.903 1 25.49 ? OAH Y01 704 D 1 
HETATM 35 O OAF Y01 . . . DB 3 122.853 90.701 68.39 1 25.49 ? OAF Y01 704 D 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           290 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           35 
#