data_7K4B # _model_server_result.job_id xHB_eRJkarlmzMgC9CqWgg _model_server_result.datetime_utc '2024-11-26 14:15:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k4b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":716}' # _entry.id 7K4B # _exptl.entry_id 7K4B _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 787.121 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 48 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7K4B _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K4B _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 S N N ? 4 T N N ? 4 W N N ? 4 X N N ? 4 BA N N ? 4 CA N N ? 4 DA N N ? 4 EA N N ? 4 FA N N ? 4 GA N N ? 4 HA N N ? 4 IA N N ? 4 JA N N ? 4 KA N N ? 4 MA N N ? 4 NA N N ? 4 QA N N ? 4 RA N N ? 4 SA N N ? 4 TA N N ? 4 UA N N ? 4 VA N N ? 4 WA N N ? 4 XA N N ? 4 YA N N ? 4 ZA N N ? 4 AB N N ? 4 BB N N ? 4 CB N N ? 4 EB N N ? 4 FB N N ? 4 HB N N ? 4 IB N N ? 4 JB N N ? 4 KB N N ? 4 LB N N ? 4 MB N N ? 4 NB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 542 A ASP 542 1_555 U CA CA . A CA 717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? metalc ? metalc2 U CA CA . A CA 717 1_555 B OD1 ASP 542 B ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.052 ? metalc ? metalc3 U CA CA . A CA 717 1_555 C OD1 ASP 542 C ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.099 ? metalc ? metalc4 U CA CA . A CA 717 1_555 D OD1 ASP 542 D ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? # _chem_comp.formula 'C44 H85 N O8 P 1' _chem_comp.formula_weight 787.121 _chem_comp.id PCW _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PCW sing 235 n n C1 O3P PCW sing 236 n n C1 H11 PCW sing 237 n n C1 H12 PCW sing 238 n n C2 C3 PCW sing 239 n n C2 O2 PCW sing 240 n n C2 H2 PCW sing 241 n n C3 O3 PCW sing 242 n n C3 H31 PCW sing 243 n n C3 H32 PCW sing 244 n n C4 C5 PCW sing 245 n n C4 O4P PCW sing 246 n n C4 H41 PCW sing 247 n n C4 H42 PCW sing 248 n n C5 N PCW sing 249 n n C5 H51 PCW sing 250 n n C5 H52 PCW sing 251 n n C6 N PCW sing 252 n n C6 H61 PCW sing 253 n n C6 H62 PCW sing 254 n n C6 H63 PCW sing 255 n n C7 N PCW sing 256 n n C7 H71 PCW sing 257 n n C7 H72 PCW sing 258 n n C7 H73 PCW sing 259 n n C8 N PCW sing 260 n n C8 H81 PCW sing 261 n n C8 H82 PCW sing 262 n n C8 H83 PCW sing 263 n n C11 C12 PCW sing 264 n n C11 O3 PCW sing 265 n n C11 O11 PCW doub 266 n n C12 C13 PCW sing 267 n n C12 H121 PCW sing 268 n n C12 H122 PCW sing 269 n n C13 C14 PCW sing 270 n n C13 H131 PCW sing 271 n n C13 H132 PCW sing 272 n n C14 C15 PCW sing 273 n n C14 H141 PCW sing 274 n n C14 H142 PCW sing 275 n n C15 C16 PCW sing 276 n n C15 H151 PCW sing 277 n n C15 H152 PCW sing 278 n n C16 C17 PCW sing 279 n n C16 H161 PCW sing 280 n n C16 H162 PCW sing 281 n n C17 C18 PCW sing 282 n n C17 H171 PCW sing 283 n n C17 H172 PCW sing 284 n n C18 C19 PCW sing 285 n n C18 H181 PCW sing 286 n n C18 H182 PCW sing 287 n n C19 C20 PCW doub 288 z n C19 H19 PCW sing 289 n n C20 C21 PCW sing 290 n n C20 H20 PCW sing 291 n n C21 C22 PCW sing 292 n n C21 H211 PCW sing 293 n n C21 H212 PCW sing 294 n n C22 C23 PCW sing 295 n n C22 H221 PCW sing 296 n n C22 H222 PCW sing 297 n n C23 C24 PCW sing 298 n n C23 H231 PCW sing 299 n n C23 H232 PCW sing 300 n n C24 C25 PCW sing 301 n n C24 H241 PCW sing 302 n n C24 H242 PCW sing 303 n n C25 C26 PCW sing 304 n n C25 H251 PCW sing 305 n n C25 H252 PCW sing 306 n n C26 C27 PCW sing 307 n n C26 H261 PCW sing 308 n n C26 H262 PCW sing 309 n n C27 C28 PCW sing 310 n n C27 H271 PCW sing 311 n n C27 H272 PCW sing 312 n n C28 H281 PCW sing 313 n n C28 H282 PCW sing 314 n n C28 H283 PCW sing 315 n n C31 C32 PCW sing 316 n n C31 O2 PCW sing 317 n n C31 O31 PCW doub 318 n n C32 C33 PCW sing 319 n n C32 H321 PCW sing 320 n n C32 H322 PCW sing 321 n n C33 C34 PCW sing 322 n n C33 H331 PCW sing 323 n n C33 H332 PCW sing 324 n n C34 C35 PCW sing 325 n n C34 H341 PCW sing 326 n n C34 H342 PCW sing 327 n n C35 C36 PCW sing 328 n n C35 H351 PCW sing 329 n n C35 H352 PCW sing 330 n n C36 C37 PCW sing 331 n n C36 H361 PCW sing 332 n n C36 H362 PCW sing 333 n n C37 C38 PCW sing 334 n n C37 H371 PCW sing 335 n n C37 H372 PCW sing 336 n n C38 C39 PCW sing 337 n n C38 H381 PCW sing 338 n n C38 H382 PCW sing 339 n n C39 C40 PCW doub 340 z n C39 H39 PCW sing 341 n n C40 C41 PCW sing 342 n n C40 H40 PCW sing 343 n n C41 C42 PCW sing 344 n n C41 H411 PCW sing 345 n n C41 H412 PCW sing 346 n n C42 C43 PCW sing 347 n n C42 H421 PCW sing 348 n n C42 H422 PCW sing 349 n n C43 C44 PCW sing 350 n n C43 H431 PCW sing 351 n n C43 H432 PCW sing 352 n n C44 C45 PCW sing 353 n n C44 H441 PCW sing 354 n n C44 H442 PCW sing 355 n n C45 C46 PCW sing 356 n n C45 H451 PCW sing 357 n n C45 H452 PCW sing 358 n n C46 C47 PCW sing 359 n n C46 H461 PCW sing 360 n n C46 H462 PCW sing 361 n n C47 C48 PCW sing 362 n n C47 H471 PCW sing 363 n n C47 H472 PCW sing 364 n n C48 H481 PCW sing 365 n n C48 H482 PCW sing 366 n n C48 H483 PCW sing 367 n n O1P P PCW sing 368 n n O1P H1P PCW sing 369 n n O2P P PCW doub 370 n n O3P P PCW sing 371 n n O4P P PCW sing 372 n n # _atom_sites.entry_id 7K4B _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 VUG A 1 701 701 VUG CIS . F 3 Y01 A 1 702 801 Y01 Y01 . G 4 PCW A 1 703 804 PCW PCW . H 4 PCW A 1 704 805 PCW PCW . I 4 PCW A 1 705 809 PCW PCW . J 4 PCW A 1 706 810 PCW PCW . K 4 PCW A 1 707 813 PCW PCW . L 4 PCW A 1 708 814 PCW PCW . M 4 PCW A 1 709 815 PCW PCW . N 4 PCW A 1 710 806 PCW PCW . O 4 PCW A 1 711 811 PCW PCW . P 4 PCW A 1 712 812 PCW PCW . Q 2 VUG A 1 713 701 VUG CIS . R 3 Y01 A 1 714 803 Y01 Y01 . S 4 PCW A 1 715 807 PCW PCW . T 4 PCW A 1 716 808 PCW PCW . U 5 CA A 1 717 901 CA CA . V 3 Y01 B 1 701 803 Y01 Y01 . W 4 PCW B 1 702 807 PCW PCW . X 4 PCW B 1 703 808 PCW PCW . Y 2 VUG B 1 704 701 VUG CIS . Z 3 Y01 B 1 705 801 Y01 Y01 . AA 3 Y01 B 1 706 803 Y01 Y01 . BA 4 PCW B 1 707 804 PCW PCW . CA 4 PCW B 1 708 805 PCW PCW . DA 4 PCW B 1 709 809 PCW PCW . EA 4 PCW B 1 710 810 PCW PCW . FA 4 PCW B 1 711 813 PCW PCW . GA 4 PCW B 1 712 814 PCW PCW . HA 4 PCW B 1 713 815 PCW PCW . IA 4 PCW B 1 714 806 PCW PCW . JA 4 PCW B 1 715 811 PCW PCW . KA 4 PCW B 1 716 812 PCW PCW . LA 2 VUG B 1 717 701 VUG CIS . MA 4 PCW C 1 701 807 PCW PCW . NA 4 PCW C 1 702 808 PCW PCW . OA 2 VUG C 1 703 701 VUG CIS . PA 3 Y01 C 1 704 801 Y01 Y01 . QA 4 PCW C 1 705 804 PCW PCW . RA 4 PCW C 1 706 805 PCW PCW . SA 4 PCW C 1 707 809 PCW PCW . TA 4 PCW C 1 708 810 PCW PCW . UA 4 PCW C 1 709 813 PCW PCW . VA 4 PCW C 1 710 814 PCW PCW . WA 4 PCW C 1 711 815 PCW PCW . XA 4 PCW C 1 712 806 PCW PCW . YA 4 PCW C 1 713 811 PCW PCW . ZA 4 PCW C 1 714 812 PCW PCW . AB 4 PCW D 1 701 806 PCW PCW . BB 4 PCW D 1 702 811 PCW PCW . CB 4 PCW D 1 703 812 PCW PCW . DB 3 Y01 D 1 704 803 Y01 Y01 . EB 4 PCW D 1 705 807 PCW PCW . FB 4 PCW D 1 706 808 PCW PCW . GB 3 Y01 D 1 707 801 Y01 Y01 . HB 4 PCW D 1 708 804 PCW PCW . IB 4 PCW D 1 709 805 PCW PCW . JB 4 PCW D 1 710 809 PCW PCW . KB 4 PCW D 1 711 810 PCW PCW . LB 4 PCW D 1 712 813 PCW PCW . MB 4 PCW D 1 713 814 PCW PCW . NB 4 PCW D 1 714 815 PCW PCW . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 PCW . . . T 4 123.607 128.814 71.9 1 84.96 ? C11 PCW 716 A 1 HETATM 2 C C12 PCW . . . T 4 122.494 129.246 72.896 1 84.96 ? C12 PCW 716 A 1 HETATM 3 C C13 PCW . . . T 4 122.995 129.598 74.333 1 84.96 ? C13 PCW 716 A 1 HETATM 4 C C14 PCW . . . T 4 124.502 129.318 74.604 1 84.96 ? C14 PCW 716 A 1 HETATM 5 C C15 PCW . . . T 4 124.836 129.206 76.123 1 84.96 ? C15 PCW 716 A 1 HETATM 6 C C16 PCW . . . T 4 124.138 130.293 76.986 1 84.96 ? C16 PCW 716 A 1 HETATM 7 C C17 PCW . . . T 4 124.174 129.956 78.504 1 84.96 ? C17 PCW 716 A 1 HETATM 8 C C18 PCW . . . T 4 123.112 128.894 78.887 1 84.96 ? C18 PCW 716 A 1 HETATM 9 C C19 PCW . . . T 4 123.032 128.404 80.138 1 84.96 ? C19 PCW 716 A 1 HETATM 10 C C20 PCW . . . T 4 123.996 128.883 81.245 1 84.96 ? C20 PCW 716 A 1 HETATM 11 C C21 PCW . . . T 4 124.156 127.826 82.374 1 84.96 ? C21 PCW 716 A 1 HETATM 12 C C22 PCW . . . T 4 122.868 127.633 83.219 1 84.96 ? C22 PCW 716 A 1 HETATM 13 C C23 PCW . . . T 4 123.185 127.568 84.74 1 84.96 ? C23 PCW 716 A 1 HETATM 14 C C24 PCW . . . T 4 121.951 127.193 85.604 1 84.96 ? C24 PCW 716 A 1 HETATM 15 C C25 PCW . . . T 4 122.319 127.032 87.101 1 84.96 ? C25 PCW 716 A 1 HETATM 16 C C26 PCW . . . T 4 121.177 126.408 87.938 1 84.96 ? C26 PCW 716 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 16 #