data_7K4F # _model_server_result.job_id TA-iGCCdbS_YEUojqR6PkA _model_server_result.datetime_utc '2024-11-04 22:22:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k4f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":701}' # _entry.id 7K4F # _exptl.entry_id 7K4F _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 419.483 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[(4-{cis-4-[3-(trifluoromethyl)phenyl]cyclohexyl}piperazin-1-yl)methyl]pyridin-2(1H)-one _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7K4F _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K4F _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 542 A ASP 542 1_555 G CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc2 G CA CA . A CA 703 1_555 B OD1 ASP 542 B ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? metalc ? metalc3 G CA CA . A CA 703 1_555 C OD1 ASP 542 C ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc4 G CA CA . A CA 703 1_555 D OD1 ASP 542 D ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? # _chem_comp.formula 'C23 H28 F3 N3 O' _chem_comp.formula_weight 419.483 _chem_comp.id 5GK _chem_comp.mon_nstd_flag . _chem_comp.name 5-[(4-{cis-4-[3-(trifluoromethyl)phenyl]cyclohexyl}piperazin-1-yl)methyl]pyridin-2(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C01 5GK doub 1 n n C01 N01 5GK sing 2 n n C01 C02 5GK sing 3 n n N01 C04 5GK sing 4 n n C02 C03 5GK doub 5 n n C04 C05 5GK doub 6 n n C03 C05 5GK sing 7 n n C05 C06 5GK sing 8 n n C06 N02 5GK sing 9 n n N02 C07 5GK sing 10 n n N02 C10 5GK sing 11 n n C07 C08 5GK sing 12 n n C10 C09 5GK sing 13 n n C08 N03 5GK sing 14 n n C09 N03 5GK sing 15 n n N03 C11 5GK sing 16 n n C11 C12 5GK sing 17 n n C11 C23 5GK sing 18 n n C12 C13 5GK sing 19 n n C23 C22 5GK sing 20 n n C13 C14 5GK sing 21 n n C16 C17 5GK doub 22 n y C16 C15 5GK sing 23 n y C22 C14 5GK sing 24 n n C17 C18 5GK sing 25 n y C14 C15 5GK sing 26 n n C15 C21 5GK doub 27 n y C18 C19 5GK doub 28 n y C21 C19 5GK sing 29 n y C19 C20 5GK sing 30 n n C20 F02 5GK sing 31 n n C20 F03 5GK sing 32 n n C20 F01 5GK sing 33 n n N01 H1 5GK sing 34 n n C02 H2 5GK sing 35 n n C03 H4 5GK sing 36 n n C04 H6 5GK sing 37 n n C06 H7 5GK sing 38 n n C06 H8 5GK sing 39 n n C07 H9 5GK sing 40 n n C07 H10 5GK sing 41 n n C08 H11 5GK sing 42 n n C08 H12 5GK sing 43 n n C09 H13 5GK sing 44 n n C09 H14 5GK sing 45 n n C10 H15 5GK sing 46 n n C10 H16 5GK sing 47 n n C11 H17 5GK sing 48 n n C12 H18 5GK sing 49 n n C12 H19 5GK sing 50 n n C13 H20 5GK sing 51 n n C13 H21 5GK sing 52 n n C14 H22 5GK sing 53 n n C16 H23 5GK sing 54 n n C17 H24 5GK sing 55 n n C18 H25 5GK sing 56 n n C21 H26 5GK sing 57 n n C22 H27 5GK sing 58 n n C22 H28 5GK sing 59 n n C23 H29 5GK sing 60 n n C23 H30 5GK sing 61 n n # _atom_sites.entry_id 7K4F _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 5GK A 1 701 701 5GK 5G . F 2 5GK A 1 702 701 5GK 5G . G 3 CA A 1 703 901 CA CA . H 2 5GK B 1 701 701 5GK 5G . I 2 5GK C 1 701 701 5GK 5G . J 2 5GK D 1 701 701 5GK 5G . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 5GK . . . I 2 129.077 96.965 83.633 1 124.24 ? C01 5GK 701 C 1 HETATM 2 N N01 5GK . . . I 2 129.258 98.293 84.007 1 124.24 ? N01 5GK 701 C 1 HETATM 3 O O01 5GK . . . I 2 128.962 96.651 82.281 1 124.24 ? O01 5GK 701 C 1 HETATM 4 C C02 5GK . . . I 2 129.002 95.897 84.642 1 124.24 ? C02 5GK 701 C 1 HETATM 5 N N02 5GK . . . I 2 129.066 99.155 88.165 1 124.24 ? N02 5GK 701 C 1 HETATM 6 C C03 5GK . . . I 2 129.118 96.234 86.001 1 124.24 ? C03 5GK 701 C 1 HETATM 7 N N03 5GK . . . I 2 129.041 100.115 90.877 1 124.24 ? N03 5GK 701 C 1 HETATM 8 C C04 5GK . . . I 2 129.374 98.632 85.407 1 124.24 ? C04 5GK 701 C 1 HETATM 9 C C05 5GK . . . I 2 129.302 97.601 86.389 1 124.24 ? C05 5GK 701 C 1 HETATM 10 C C06 5GK . . . I 2 129.43 97.939 87.901 1 124.24 ? C06 5GK 701 C 1 HETATM 11 C C07 5GK . . . I 2 130.122 99.732 88.688 1 124.24 ? C07 5GK 701 C 1 HETATM 12 C C08 5GK . . . I 2 129.993 100.617 89.916 1 124.24 ? C08 5GK 701 C 1 HETATM 13 C C09 5GK . . . I 2 127.781 99.971 90.194 1 124.24 ? C09 5GK 701 C 1 HETATM 14 C C10 5GK . . . I 2 127.917 99.065 88.903 1 124.24 ? C10 5GK 701 C 1 HETATM 15 C C11 5GK . . . I 2 129.422 98.808 91.461 1 124.24 ? C11 5GK 701 C 1 HETATM 16 C C12 5GK . . . I 2 130.797 98.793 92.08 1 124.24 ? C12 5GK 701 C 1 HETATM 17 C C13 5GK . . . I 2 130.915 99.726 93.303 1 124.24 ? C13 5GK 701 C 1 HETATM 18 C C14 5GK . . . I 2 129.879 99.489 94.383 1 124.24 ? C14 5GK 701 C 1 HETATM 19 C C15 5GK . . . I 2 129.402 100.882 94.687 1 124.24 ? C15 5GK 701 C 1 HETATM 20 C C16 5GK . . . I 2 128.884 101.655 93.754 1 124.24 ? C16 5GK 701 C 1 HETATM 21 C C17 5GK . . . I 2 128.441 103.057 94.128 1 124.24 ? C17 5GK 701 C 1 HETATM 22 C C18 5GK . . . I 2 128.596 103.463 95.377 1 124.24 ? C18 5GK 701 C 1 HETATM 23 C C19 5GK . . . I 2 129.222 102.542 96.418 1 124.24 ? C19 5GK 701 C 1 HETATM 24 C C20 5GK . . . I 2 129.418 102.991 97.872 1 124.24 ? C20 5GK 701 C 1 HETATM 25 C C21 5GK . . . I 2 129.604 101.346 96.116 1 124.24 ? C21 5GK 701 C 1 HETATM 26 C C22 5GK . . . I 2 128.688 98.571 94.012 1 124.24 ? C22 5GK 701 C 1 HETATM 27 C C23 5GK . . . I 2 128.365 98.357 92.475 1 124.24 ? C23 5GK 701 C 1 HETATM 28 F F01 5GK . . . I 2 130.127 102.029 98.518 1 124.24 ? F01 5GK 701 C 1 HETATM 29 F F02 5GK . . . I 2 130.115 104.166 97.876 1 124.24 ? F02 5GK 701 C 1 HETATM 30 F F03 5GK . . . I 2 128.186 103.152 98.442 1 124.24 ? F03 5GK 701 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #