data_7K4F
#
_model_server_result.job_id            FXd8oYX0qd58-PfXgjNVpw 
_model_server_result.datetime_utc      '2024-11-04 22:18:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7k4f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":701}' 
#
_entry.id    7K4F 
#
_exptl.entry_id    7K4F 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              419.483 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-[(4-{cis-4-[3-(trifluoromethyl)phenyl]cyclohexyl}piperazin-1-yl)methyl]pyridin-2(1H)-one 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7K4F 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7K4F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 542 A ASP 542 1_555 G CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
metalc ? metalc2 G CA CA . A CA 703 1_555 B OD1 ASP 542 B ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? 
metalc ? metalc3 G CA CA . A CA 703 1_555 C OD1 ASP 542 C ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? 
metalc ? metalc4 G CA CA . A CA 703 1_555 D OD1 ASP 542 D ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? 
#
_chem_comp.formula           'C23 H28 F3 N3 O' 
_chem_comp.formula_weight    419.483 
_chem_comp.id                5GK 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-[(4-{cis-4-[3-(trifluoromethyl)phenyl]cyclohexyl}piperazin-1-yl)methyl]pyridin-2(1H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O01 C01 5GK doub 1 n n 
C01 N01 5GK sing 2 n n 
C01 C02 5GK sing 3 n n 
N01 C04 5GK sing 4 n n 
C02 C03 5GK doub 5 n n 
C04 C05 5GK doub 6 n n 
C03 C05 5GK sing 7 n n 
C05 C06 5GK sing 8 n n 
C06 N02 5GK sing 9 n n 
N02 C07 5GK sing 10 n n 
N02 C10 5GK sing 11 n n 
C07 C08 5GK sing 12 n n 
C10 C09 5GK sing 13 n n 
C08 N03 5GK sing 14 n n 
C09 N03 5GK sing 15 n n 
N03 C11 5GK sing 16 n n 
C11 C12 5GK sing 17 n n 
C11 C23 5GK sing 18 n n 
C12 C13 5GK sing 19 n n 
C23 C22 5GK sing 20 n n 
C13 C14 5GK sing 21 n n 
C16 C17 5GK doub 22 n y 
C16 C15 5GK sing 23 n y 
C22 C14 5GK sing 24 n n 
C17 C18 5GK sing 25 n y 
C14 C15 5GK sing 26 n n 
C15 C21 5GK doub 27 n y 
C18 C19 5GK doub 28 n y 
C21 C19 5GK sing 29 n y 
C19 C20 5GK sing 30 n n 
C20 F02 5GK sing 31 n n 
C20 F03 5GK sing 32 n n 
C20 F01 5GK sing 33 n n 
N01 H1 5GK sing 34 n n 
C02 H2 5GK sing 35 n n 
C03 H4 5GK sing 36 n n 
C04 H6 5GK sing 37 n n 
C06 H7 5GK sing 38 n n 
C06 H8 5GK sing 39 n n 
C07 H9 5GK sing 40 n n 
C07 H10 5GK sing 41 n n 
C08 H11 5GK sing 42 n n 
C08 H12 5GK sing 43 n n 
C09 H13 5GK sing 44 n n 
C09 H14 5GK sing 45 n n 
C10 H15 5GK sing 46 n n 
C10 H16 5GK sing 47 n n 
C11 H17 5GK sing 48 n n 
C12 H18 5GK sing 49 n n 
C12 H19 5GK sing 50 n n 
C13 H20 5GK sing 51 n n 
C13 H21 5GK sing 52 n n 
C14 H22 5GK sing 53 n n 
C16 H23 5GK sing 54 n n 
C17 H24 5GK sing 55 n n 
C18 H25 5GK sing 56 n n 
C21 H26 5GK sing 57 n n 
C22 H27 5GK sing 58 n n 
C22 H28 5GK sing 59 n n 
C23 H29 5GK sing 60 n n 
C23 H30 5GK sing 61 n n 
#
_atom_sites.entry_id                     7K4F 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 5GK A 1 701 701 5GK 5G . 
F 2 5GK A 1 702 701 5GK 5G . 
G 3 CA A 1 703 901 CA CA . 
H 2 5GK B 1 701 701 5GK 5G . 
I 2 5GK C 1 701 701 5GK 5G . 
J 2 5GK D 1 701 701 5GK 5G . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 5GK . . . J 2 119.004 128.917 83.671 1 124.74 ? C01 5GK 701 D 1 
HETATM 2 N N01 5GK . . . J 2 117.683 129.09 84.073 1 124.74 ? N01 5GK 701 D 1 
HETATM 3 O O01 5GK . . . J 2 119.287 128.757 82.316 1 124.74 ? O01 5GK 701 D 1 
HETATM 4 C C02 5GK . . . J 2 120.101 128.909 84.654 1 124.74 ? C02 5GK 701 D 1 
HETATM 5 N N02 5GK . . . J 2 116.909 129.093 88.199 1 124.74 ? N02 5GK 701 D 1 
HETATM 6 C C03 5GK . . . J 2 119.802 129.073 86.016 1 124.74 ? C03 5GK 701 D 1 
HETATM 7 N N03 5GK . . . J 2 115.861 129.03 90.87 1 124.74 ? N03 5GK 701 D 1 
HETATM 8 C C04 5GK . . . J 2 117.383 129.253 85.478 1 124.74 ? C04 5GK 701 D 1 
HETATM 9 C C05 5GK . . . J 2 118.443 129.245 86.432 1 124.74 ? C05 5GK 701 D 1 
HETATM 10 C C06 5GK . . . J 2 118.135 129.422 87.944 1 124.74 ? C06 5GK 701 D 1 
HETATM 11 C C07 5GK . . . J 2 116.381 130.162 88.742 1 124.74 ? C07 5GK 701 D 1 
HETATM 12 C C08 5GK . . . J 2 115.43 130.024 89.915 1 124.74 ? C08 5GK 701 D 1 
HETATM 13 C C09 5GK . . . J 2 115.987 127.784 90.155 1 124.74 ? C09 5GK 701 D 1 
HETATM 14 C C10 5GK . . . J 2 116.956 127.926 88.913 1 124.74 ? C10 5GK 701 D 1 
HETATM 15 C C11 5GK . . . J 2 117.159 129.343 91.514 1 124.74 ? C11 5GK 701 D 1 
HETATM 16 C C12 5GK . . . J 2 117.193 130.692 92.184 1 124.74 ? C12 5GK 701 D 1 
HETATM 17 C C13 5GK . . . J 2 116.189 130.768 93.351 1 124.74 ? C13 5GK 701 D 1 
HETATM 18 C C14 5GK . . . J 2 116.41 129.748 94.441 1 124.74 ? C14 5GK 701 D 1 
HETATM 19 C C15 5GK . . . J 2 115.003 129.309 94.734 1 124.74 ? C15 5GK 701 D 1 
HETATM 20 C C16 5GK . . . J 2 114.214 128.849 93.782 1 124.74 ? C16 5GK 701 D 1 
HETATM 21 C C17 5GK . . . J 2 112.796 128.439 94.137 1 124.74 ? C17 5GK 701 D 1 
HETATM 22 C C18 5GK . . . J 2 112.391 128.561 95.391 1 124.74 ? C18 5GK 701 D 1 
HETATM 23 C C19 5GK . . . J 2 113.334 129.12 96.453 1 124.74 ? C19 5GK 701 D 1 
HETATM 24 C C20 5GK . . . J 2 112.892 129.268 97.915 1 124.74 ? C20 5GK 701 D 1 
HETATM 25 C C21 5GK . . . J 2 114.545 129.472 96.168 1 124.74 ? C21 5GK 701 D 1 
HETATM 26 C C22 5GK . . . J 2 117.286 128.532 94.058 1 124.74 ? C22 5GK 701 D 1 
HETATM 27 C C23 5GK . . . J 2 117.519 128.24 92.516 1 124.74 ? C23 5GK 701 D 1 
HETATM 28 F F01 5GK . . . J 2 113.849 129.97 98.577 1 124.74 ? F01 5GK 701 D 1 
HETATM 29 F F02 5GK . . . J 2 111.696 129.927 97.966 1 124.74 ? F02 5GK 701 D 1 
HETATM 30 F F03 5GK . . . J 2 112.762 128.009 98.431 1 124.74 ? F03 5GK 701 D 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           30 
#