data_7K5B # _model_server_result.job_id 9EorNgonuq0VpPR589YuOA _model_server_result.datetime_utc '2024-10-20 08:19:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k5b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CA","auth_seq_id":5601}' # _entry.id 7K5B # _exptl.entry_id 7K5B _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 20 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7K5B _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K5B _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 20 T N N ? 20 CA N N ? 20 EA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 N SG CYS 65 N CYS 68 1_555 O SG CYS 89 O CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc1 A OG SER 2160 A SER 2164 1_555 V MG MG . A MG 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc2 S O1B ADP . A ADP 4701 1_555 W MG MG . A MG 5002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? metalc ? metalc3 S O3A ADP . A ADP 4701 1_555 W MG MG . A MG 5002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc4 T O3G ATP . A ATP 4801 1_555 V MG MG . A MG 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.467 ? metalc ? metalc5 T O1B ATP . A ATP 4801 1_555 V MG MG . A MG 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc6 T O3B ATP . A ATP 4801 1_555 V MG MG . A MG 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc7 U O1B ADP . A ADP 4901 1_555 X MG MG . A MG 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? metalc ? metalc8 U O5' ADP . A ADP 4901 1_555 X MG MG . A MG 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc9 B OG1 THR 2545 B THR 2545 1_555 Z MG MG . B MG 5101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc10 Y MG MG . B MG 4801 1_555 CA O2G ATP . B ATP 5601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc11 Y MG MG . B MG 4801 1_555 CA O3B ATP . B ATP 5601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? metalc ? metalc12 Y MG MG . B MG 4801 1_555 CA O2A ATP . B ATP 5601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc13 Z MG MG . B MG 5101 1_555 BA O2B ADP . B ADP 5501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc14 Z MG MG . B MG 5101 1_555 BA O3A ADP . B ADP 5501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? metalc ? metalc15 AA MG MG . B MG 5401 1_555 DA O1B ADP . B ADP 5602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc16 AA MG MG . B MG 5401 1_555 DA O1A ADP . B ADP 5602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc17 AA MG MG . B MG 5401 1_555 DA O5' ADP . B ADP 5602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? metalc ? metalc18 C OG SER 1574 C SER 1691 1_555 FA MG MG . C MG 4301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc19 C OG1 THR 1900 C THR 2017 1_555 GA MG MG . C MG 4501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc20 EA O3G ATP . C ATP 4201 1_555 FA MG MG . C MG 4301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc21 EA O1B ATP . C ATP 4201 1_555 FA MG MG . C MG 4301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc22 EA O2A ATP . C ATP 4201 1_555 FA MG MG . C MG 4301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc23 GA MG MG . C MG 4501 1_555 IA O1A ADP . C ADP 4702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc24 GA MG MG . C MG 4501 1_555 IA O2B ADP . C ADP 4702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? metalc ? metalc25 HA MG MG . C MG 4701 1_555 JA O2A ADP . C ADP 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc26 HA MG MG . C MG 4701 1_555 JA O3A ADP . C ADP 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7K5B _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code S 19 ADP A 1 4701 4701 ADP ADP . T 20 ATP A 1 4801 4801 ATP ATP . U 19 ADP A 1 4901 4901 ADP ADP . V 21 MG A 1 5001 5001 MG MG . W 21 MG A 1 5002 5002 MG MG . X 21 MG A 1 5101 5101 MG MG . Y 21 MG B 1 4801 4801 MG MG . Z 21 MG B 1 5101 5101 MG MG . AA 21 MG B 1 5401 5401 MG MG . BA 19 ADP B 1 5501 5501 ADP ADP . CA 20 ATP B 1 5601 5601 ATP ATP . DA 19 ADP B 1 5602 5602 ADP ADP . EA 20 ATP C 1 4201 4201 ATP ATP . FA 21 MG C 1 4301 4301 MG MG . GA 21 MG C 1 4501 4501 MG MG . HA 21 MG C 1 4701 4701 MG MG . IA 19 ADP C 1 4702 4702 ADP ADP . JA 19 ADP C 1 4703 4703 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . CA 20 286.481 201.23 163.66 1 131.22 ? PG ATP 5601 B 1 HETATM 2 O O1G ATP . . . CA 20 285.148 200.989 164.324 1 136.71 ? O1G ATP 5601 B 1 HETATM 3 O O2G ATP . . . CA 20 287.155 202.49 164.144 1 135.09 ? O2G ATP 5601 B 1 HETATM 4 O O3G ATP . . . CA 20 286.404 201.152 162.155 1 144.17 ? O3G ATP 5601 B 1 HETATM 5 P PB ATP . . . CA 20 287.348 198.429 163.906 1 117.05 ? PB ATP 5601 B 1 HETATM 6 O O1B ATP . . . CA 20 287.367 198.14 162.441 1 99.88 ? O1B ATP 5601 B 1 HETATM 7 O O2B ATP . . . CA 20 286.241 197.892 164.751 1 123.95 ? O2B ATP 5601 B 1 HETATM 8 O O3B ATP . . . CA 20 287.434 200.013 164.118 1 118.66 ? O3B ATP 5601 B 1 HETATM 9 P PA ATP . . . CA 20 290.252 198.442 164.258 1 132.95 ? PA ATP 5601 B 1 HETATM 10 O O1A ATP . . . CA 20 290.684 197.931 162.924 1 119.19 ? O1A ATP 5601 B 1 HETATM 11 O O2A ATP . . . CA 20 290.345 199.912 164.506 1 171.67 ? O2A ATP 5601 B 1 HETATM 12 O O3A ATP . . . CA 20 288.745 197.976 164.541 1 128.96 ? O3A ATP 5601 B 1 HETATM 13 O O5' ATP . . . CA 20 291.039 197.659 165.415 1 131.25 ? O5' ATP 5601 B 1 HETATM 14 C C5' ATP . . . CA 20 291.109 196.212 165.368 1 135.67 ? C5' ATP 5601 B 1 HETATM 15 C C4' ATP . . . CA 20 291.667 195.701 166.674 1 144.25 ? C4' ATP 5601 B 1 HETATM 16 O O4' ATP . . . CA 20 292.067 194.316 166.492 1 141.99 ? O4' ATP 5601 B 1 HETATM 17 C C3' ATP . . . CA 20 292.953 196.399 167.134 1 141.58 ? C3' ATP 5601 B 1 HETATM 18 O O3' ATP . . . CA 20 293.181 196.161 168.516 1 131.32 ? O3' ATP 5601 B 1 HETATM 19 C C2' ATP . . . CA 20 293.981 195.642 166.295 1 143.24 ? C2' ATP 5601 B 1 HETATM 20 O O2' ATP . . . CA 20 295.316 195.822 166.714 1 143.31 ? O2' ATP 5601 B 1 HETATM 21 C C1' ATP . . . CA 20 293.474 194.222 166.516 1 142.56 ? C1' ATP 5601 B 1 HETATM 22 N N9 ATP . . . CA 20 293.893 193.278 165.488 1 147.41 ? N9 ATP 5601 B 1 HETATM 23 C C8 ATP . . . CA 20 294.07 193.52 164.148 1 140.91 ? C8 ATP 5601 B 1 HETATM 24 N N7 ATP . . . CA 20 294.46 192.453 163.49 1 145.59 ? N7 ATP 5601 B 1 HETATM 25 C C5 ATP . . . CA 20 294.55 191.457 164.455 1 161.98 ? C5 ATP 5601 B 1 HETATM 26 C C6 ATP . . . CA 20 294.914 190.099 164.393 1 166.21 ? C6 ATP 5601 B 1 HETATM 27 N N6 ATP . . . CA 20 295.274 189.479 163.273 1 170.68 ? N6 ATP 5601 B 1 HETATM 28 N N1 ATP . . . CA 20 294.895 189.396 165.551 1 185.12 ? N1 ATP 5601 B 1 HETATM 29 C C2 ATP . . . CA 20 294.533 190.026 166.677 1 200.86 ? C2 ATP 5601 B 1 HETATM 30 N N3 ATP . . . CA 20 294.172 191.294 166.854 1 184.56 ? N3 ATP 5601 B 1 HETATM 31 C C4 ATP . . . CA 20 294.202 191.96 165.69 1 164.33 ? C4 ATP 5601 B 1 # _model_server_stats.io_time_ms 104 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 446 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 31 #