data_7K5N # _model_server_result.job_id 5pi70_iN4-cjTQfcQnEjxw _model_server_result.datetime_utc '2024-11-29 17:30:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k5n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7K5N # _exptl.entry_id 7K5N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 115.13 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PROLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7K5N _cell.length_a 86.188 _cell.length_b 86.188 _cell.length_c 75.078 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K5N _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 86.188 0 75.078 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H9 N O2' _chem_comp.formula_weight 115.13 _chem_comp.id PRO _chem_comp.mon_nstd_flag y _chem_comp.name PROLINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA PRO sing 260 n n N CD PRO sing 261 n n N H PRO sing 262 n n CA C PRO sing 263 n n CA CB PRO sing 264 n n CA HA PRO sing 265 n n C O PRO doub 266 n n C OXT PRO sing 267 n n CB CG PRO sing 268 n n CB HB2 PRO sing 269 n n CB HB3 PRO sing 270 n n CG CD PRO sing 271 n n CG HG2 PRO sing 272 n n CG HG3 PRO sing 273 n n CD HD2 PRO sing 274 n n CD HD3 PRO sing 275 n n OXT HXT PRO sing 276 n n # _atom_sites.entry_id 7K5N _atom_sites.fract_transf_matrix[1][1] 0.011603 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013319 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PRO A 1 301 1 PRO PRO . C 3 GOL A 1 302 1 GOL GOL . D 4 HOH A 1 401 23 HOH HOH . D 4 HOH A 2 402 25 HOH HOH . D 4 HOH A 3 403 27 HOH HOH . D 4 HOH A 4 404 4 HOH HOH . D 4 HOH A 5 405 20 HOH HOH . D 4 HOH A 6 406 14 HOH HOH . D 4 HOH A 7 407 19 HOH HOH . D 4 HOH A 8 408 7 HOH HOH . D 4 HOH A 9 409 13 HOH HOH . D 4 HOH A 10 410 28 HOH HOH . D 4 HOH A 11 411 6 HOH HOH . D 4 HOH A 12 412 3 HOH HOH . D 4 HOH A 13 413 1 HOH HOH . D 4 HOH A 14 414 10 HOH HOH . D 4 HOH A 15 415 11 HOH HOH . D 4 HOH A 16 416 26 HOH HOH . D 4 HOH A 17 417 2 HOH HOH . D 4 HOH A 18 418 8 HOH HOH . D 4 HOH A 19 419 21 HOH HOH . D 4 HOH A 20 420 18 HOH HOH . D 4 HOH A 21 421 16 HOH HOH . D 4 HOH A 22 422 12 HOH HOH . D 4 HOH A 23 423 24 HOH HOH . D 4 HOH A 24 424 29 HOH HOH . D 4 HOH A 25 425 5 HOH HOH . D 4 HOH A 26 426 15 HOH HOH . D 4 HOH A 27 427 22 HOH HOH . D 4 HOH A 28 428 17 HOH HOH . D 4 HOH A 29 429 9 HOH HOH . D 4 HOH A 30 430 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N PRO . . . B 2 37.713 8.773 14.051 1 46.9 ? N PRO 301 A 1 HETATM 2 C CA PRO . . . B 2 37.449 10.091 13.474 1 43.56 ? CA PRO 301 A 1 HETATM 3 C C PRO . . . B 2 36.313 10.066 12.519 1 42.33 ? C PRO 301 A 1 HETATM 4 O O PRO . . . B 2 35.968 11.111 11.945 1 50.08 -1 O PRO 301 A 1 HETATM 5 C CB PRO . . . B 2 38.741 10.431 12.75 1 49.3 ? CB PRO 301 A 1 HETATM 6 C CG PRO . . . B 2 39.771 9.696 13.429 1 51.07 ? CG PRO 301 A 1 HETATM 7 C CD PRO . . . B 2 39.154 8.464 14.055 1 54.16 ? CD PRO 301 A 1 HETATM 8 O OXT PRO . . . B 2 35.697 9.005 12.342 1 46.49 ? OXT PRO 301 A 1 HETATM 9 H H2 PRO . . . B 2 37.253 8.108 13.533 1 56.4 ? H2 PRO 301 A 1 HETATM 10 H H3 PRO . . . B 2 37.388 8.757 14.954 1 56.4 ? H3 PRO 301 A 1 HETATM 11 H HA PRO . . . B 2 37.287 10.746 14.17 1 52.39 ? HA PRO 301 A 1 HETATM 12 H HB2 PRO . . . B 2 38.678 10.159 11.821 1 59.27 ? HB2 PRO 301 A 1 HETATM 13 H HB3 PRO . . . B 2 38.906 11.386 12.805 1 59.27 ? HB3 PRO 301 A 1 HETATM 14 H HG2 PRO . . . B 2 40.45 9.438 12.786 1 61.4 ? HG2 PRO 301 A 1 HETATM 15 H HG3 PRO . . . B 2 40.16 10.259 14.116 1 61.4 ? HG3 PRO 301 A 1 HETATM 16 H HD2 PRO . . . B 2 39.34 7.675 13.523 1 65.11 ? HD2 PRO 301 A 1 HETATM 17 H HD3 PRO . . . B 2 39.478 8.338 14.961 1 65.11 ? HD3 PRO 301 A 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #