data_7K5N # _model_server_result.job_id TF5TbCiiZF0dMgmfbCQFhA _model_server_result.datetime_utc '2024-11-29 17:50:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k5n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 7K5N # _exptl.entry_id 7K5N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7K5N _cell.length_a 86.188 _cell.length_b 86.188 _cell.length_c 75.078 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K5N _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 86.188 0 75.078 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 7K5N _atom_sites.fract_transf_matrix[1][1] 0.011603 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011603 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013319 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PRO A 1 301 1 PRO PRO . C 3 GOL A 1 302 1 GOL GOL . D 4 HOH A 1 401 23 HOH HOH . D 4 HOH A 2 402 25 HOH HOH . D 4 HOH A 3 403 27 HOH HOH . D 4 HOH A 4 404 4 HOH HOH . D 4 HOH A 5 405 20 HOH HOH . D 4 HOH A 6 406 14 HOH HOH . D 4 HOH A 7 407 19 HOH HOH . D 4 HOH A 8 408 7 HOH HOH . D 4 HOH A 9 409 13 HOH HOH . D 4 HOH A 10 410 28 HOH HOH . D 4 HOH A 11 411 6 HOH HOH . D 4 HOH A 12 412 3 HOH HOH . D 4 HOH A 13 413 1 HOH HOH . D 4 HOH A 14 414 10 HOH HOH . D 4 HOH A 15 415 11 HOH HOH . D 4 HOH A 16 416 26 HOH HOH . D 4 HOH A 17 417 2 HOH HOH . D 4 HOH A 18 418 8 HOH HOH . D 4 HOH A 19 419 21 HOH HOH . D 4 HOH A 20 420 18 HOH HOH . D 4 HOH A 21 421 16 HOH HOH . D 4 HOH A 22 422 12 HOH HOH . D 4 HOH A 23 423 24 HOH HOH . D 4 HOH A 24 424 29 HOH HOH . D 4 HOH A 25 425 5 HOH HOH . D 4 HOH A 26 426 15 HOH HOH . D 4 HOH A 27 427 22 HOH HOH . D 4 HOH A 28 428 17 HOH HOH . D 4 HOH A 29 429 9 HOH HOH . D 4 HOH A 30 430 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 26.513 16.839 24.118 1 54.75 ? C1 GOL 302 A 1 HETATM 2 O O1 GOL . . . C 3 25.963 17.098 25.379 1 58.05 ? O1 GOL 302 A 1 HETATM 3 C C2 GOL . . . C 3 28.086 16.937 24.328 1 59.5 ? C2 GOL 302 A 1 HETATM 4 O O2 GOL . . . C 3 28.417 17.86 25.283 1 60.45 ? O2 GOL 302 A 1 HETATM 5 C C3 GOL . . . C 3 28.605 15.517 24.776 1 50.33 ? C3 GOL 302 A 1 HETATM 6 O O3 GOL . . . C 3 27.904 14.507 24.069 1 49.85 ? O3 GOL 302 A 1 HETATM 7 H H31 GOL . . . C 3 28.495 15.448 25.738 1 60.5 ? H31 GOL 302 A 1 HETATM 8 H H32 GOL . . . C 3 29.562 15.486 24.625 1 60.5 ? H32 GOL 302 A 1 HETATM 9 H HO3 GOL . . . C 3 28.077 14.628 23.255 1 59.93 ? HO3 GOL 302 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #