data_7K5T # _model_server_result.job_id RGQdDhQ0k2a0nbUKc8c3kA _model_server_result.datetime_utc '2025-01-10 19:58:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k5t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":904}' # _entry.id 7K5T # _exptl.entry_id 7K5T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 467.157 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7K5T _cell.length_a 86.631 _cell.length_b 93.589 _cell.length_c 105.471 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K5T _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N3 DC 2 P DC 2 1_555 B N1 DG 14 T DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 2 P DC 2 1_555 B O6 DG 14 T DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 2 P DC 2 1_555 B N2 DG 14 T DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 3 P DG 3 1_555 B N3 DC 13 T DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 3 P DG 3 1_555 B O2 DC 13 T DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 3 P DG 3 1_555 B N4 DC 13 T DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DA 4 P DA 4 1_555 B N3 DT 12 T DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N6 DA 4 P DA 4 1_555 B O4 DT 12 T DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 DT 5 P DT 5 1_555 B N1 DA 11 T DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O4 DT 5 P DT 5 1_555 B N6 DA 11 T DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DC 6 P DC 6 1_555 B N1 DG 10 T DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N4 DC 6 P DC 6 1_555 B O6 DG 10 T DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O2 DC 6 P DC 6 1_555 B N2 DG 10 T DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N1 DA 7 P DA 7 1_555 B N3 DT 9 T DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N6 DA 7 P DA 7 1_555 B O4 DT 9 T DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DC 8 P DC 8 1_555 B N1 DG 8 T DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N4 DC 8 P DC 8 1_555 B O6 DG 8 T DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O2 DC 8 P DC 8 1_555 B N2 DG 8 T DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 DG 9 P DG 9 1_555 B N3 DC 7 T DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N2 DG 9 P DG 9 1_555 B O2 DC 7 T DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O6 DG 9 P DG 9 1_555 B N4 DC 7 T DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N3 DT 10 P DT 10 1_555 B N1 DA 6 T DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O4 DT 10 P DT 10 1_555 B N6 DA 6 T DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 DA 11 P DA 11 1_555 B N3 DT 5 T DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N6 DA 11 P DA 11 1_555 B O4 DT 5 T DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C9 H16 N3 O13 P3' _chem_comp.formula_weight 467.157 _chem_comp.id DCP _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 DCP sing 156 n n N1 C6 DCP sing 157 n n N1 C1' DCP sing 158 n n C2 N3 DCP sing 159 n n C2 O2 DCP doub 160 n n N3 C4 DCP doub 161 n n C4 C5 DCP sing 162 n n C4 N4 DCP sing 163 n n C5 C6 DCP doub 164 n n C5 H5 DCP sing 165 n n C6 H6 DCP sing 166 n n N4 HN41 DCP sing 167 n n N4 HN42 DCP sing 168 n n C1' C2' DCP sing 169 n n C1' O4' DCP sing 170 n n C1' H1' DCP sing 171 n n C2' C3' DCP sing 172 n n C2' "H2'1" DCP sing 173 n n C2' "H2'2" DCP sing 174 n n C3' C4' DCP sing 175 n n C3' O3' DCP sing 176 n n C3' H3' DCP sing 177 n n C4' O4' DCP sing 178 n n C4' C5' DCP sing 179 n n C4' H4' DCP sing 180 n n O3' HO3' DCP sing 181 n n C5' O5' DCP sing 182 n n C5' "H5'1" DCP sing 183 n n C5' "H5'2" DCP sing 184 n n O5' PA DCP sing 185 n n PA O1A DCP doub 186 n n PA O2A DCP sing 187 n n PA O3A DCP sing 188 n n O2A HOA2 DCP sing 189 n n O3A PB DCP sing 190 n n PB O1B DCP doub 191 n n PB O2B DCP sing 192 n n PB O3B DCP sing 193 n n O2B HOB2 DCP sing 194 n n O3B PG DCP sing 195 n n PG O1G DCP doub 196 n n PG O2G DCP sing 197 n n PG O3G DCP sing 198 n n O2G HOG2 DCP sing 199 n n O3G HOG3 DCP sing 200 n n # _atom_sites.entry_id 7K5T _atom_sites.fract_transf_matrix[1][1] 0.011543 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010685 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009481 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SO4 A 1 901 910 SO4 SO4 . E 4 SO4 A 1 902 1 SO4 SO4 . F 4 SO4 A 1 903 2 SO4 SO4 . G 5 DCP A 1 904 1 DCP DCP . H 6 HOH P 1 101 111 HOH HOH . H 6 HOH P 2 102 84 HOH HOH . H 6 HOH P 3 103 45 HOH HOH . I 6 HOH T 1 101 67 HOH HOH . I 6 HOH T 2 102 81 HOH HOH . J 6 HOH A 1 1001 21 HOH HOH . J 6 HOH A 2 1002 94 HOH HOH . J 6 HOH A 3 1003 71 HOH HOH . J 6 HOH A 4 1004 69 HOH HOH . J 6 HOH A 5 1005 42 HOH HOH . J 6 HOH A 6 1006 49 HOH HOH . J 6 HOH A 7 1007 117 HOH HOH . J 6 HOH A 8 1008 96 HOH HOH . J 6 HOH A 9 1009 31 HOH HOH . J 6 HOH A 10 1010 15 HOH HOH . J 6 HOH A 11 1011 60 HOH HOH . J 6 HOH A 12 1012 14 HOH HOH . J 6 HOH A 13 1013 99 HOH HOH . J 6 HOH A 14 1014 29 HOH HOH . J 6 HOH A 15 1015 112 HOH HOH . J 6 HOH A 16 1016 32 HOH HOH . J 6 HOH A 17 1017 4 HOH HOH . J 6 HOH A 18 1018 36 HOH HOH . J 6 HOH A 19 1019 1 HOH HOH . J 6 HOH A 20 1020 72 HOH HOH . J 6 HOH A 21 1021 85 HOH HOH . J 6 HOH A 22 1022 6 HOH HOH . J 6 HOH A 23 1023 46 HOH HOH . J 6 HOH A 24 1024 2 HOH HOH . J 6 HOH A 25 1025 80 HOH HOH . J 6 HOH A 26 1026 78 HOH HOH . J 6 HOH A 27 1027 77 HOH HOH . J 6 HOH A 28 1028 25 HOH HOH . J 6 HOH A 29 1029 5 HOH HOH . J 6 HOH A 30 1030 30 HOH HOH . J 6 HOH A 31 1031 44 HOH HOH . J 6 HOH A 32 1032 24 HOH HOH . J 6 HOH A 33 1033 11 HOH HOH . J 6 HOH A 34 1034 7 HOH HOH . J 6 HOH A 35 1035 109 HOH HOH . J 6 HOH A 36 1036 9 HOH HOH . J 6 HOH A 37 1037 13 HOH HOH . J 6 HOH A 38 1038 16 HOH HOH . J 6 HOH A 39 1039 26 HOH HOH . J 6 HOH A 40 1040 10 HOH HOH . J 6 HOH A 41 1041 88 HOH HOH . J 6 HOH A 42 1042 43 HOH HOH . J 6 HOH A 43 1043 54 HOH HOH . J 6 HOH A 44 1044 118 HOH HOH . J 6 HOH A 45 1045 27 HOH HOH . J 6 HOH A 46 1046 41 HOH HOH . J 6 HOH A 47 1047 17 HOH HOH . J 6 HOH A 48 1048 18 HOH HOH . J 6 HOH A 49 1049 48 HOH HOH . J 6 HOH A 50 1050 58 HOH HOH . J 6 HOH A 51 1051 8 HOH HOH . J 6 HOH A 52 1052 64 HOH HOH . J 6 HOH A 53 1053 33 HOH HOH . J 6 HOH A 54 1054 3 HOH HOH . J 6 HOH A 55 1055 50 HOH HOH . J 6 HOH A 56 1056 37 HOH HOH . J 6 HOH A 57 1057 34 HOH HOH . J 6 HOH A 58 1058 28 HOH HOH . J 6 HOH A 59 1059 35 HOH HOH . J 6 HOH A 60 1060 39 HOH HOH . J 6 HOH A 61 1061 89 HOH HOH . J 6 HOH A 62 1062 22 HOH HOH . J 6 HOH A 63 1063 87 HOH HOH . J 6 HOH A 64 1064 61 HOH HOH . J 6 HOH A 65 1065 12 HOH HOH . J 6 HOH A 66 1066 108 HOH HOH . J 6 HOH A 67 1067 23 HOH HOH . J 6 HOH A 68 1068 95 HOH HOH . J 6 HOH A 69 1069 75 HOH HOH . J 6 HOH A 70 1070 73 HOH HOH . J 6 HOH A 71 1071 55 HOH HOH . J 6 HOH A 72 1072 53 HOH HOH . J 6 HOH A 73 1073 101 HOH HOH . J 6 HOH A 74 1074 38 HOH HOH . J 6 HOH A 75 1075 19 HOH HOH . J 6 HOH A 76 1076 74 HOH HOH . J 6 HOH A 77 1077 65 HOH HOH . J 6 HOH A 78 1078 52 HOH HOH . J 6 HOH A 79 1079 82 HOH HOH . J 6 HOH A 80 1080 102 HOH HOH . J 6 HOH A 81 1081 68 HOH HOH . J 6 HOH A 82 1082 79 HOH HOH . J 6 HOH A 83 1083 107 HOH HOH . J 6 HOH A 84 1084 103 HOH HOH . J 6 HOH A 85 1085 51 HOH HOH . J 6 HOH A 86 1086 59 HOH HOH . J 6 HOH A 87 1087 40 HOH HOH . J 6 HOH A 88 1088 93 HOH HOH . J 6 HOH A 89 1089 20 HOH HOH . J 6 HOH A 90 1090 63 HOH HOH . J 6 HOH A 91 1091 66 HOH HOH . J 6 HOH A 92 1092 114 HOH HOH . J 6 HOH A 93 1093 91 HOH HOH . J 6 HOH A 94 1094 116 HOH HOH . J 6 HOH A 95 1095 119 HOH HOH . J 6 HOH A 96 1096 105 HOH HOH . J 6 HOH A 97 1097 62 HOH HOH . J 6 HOH A 98 1098 47 HOH HOH . J 6 HOH A 99 1099 100 HOH HOH . J 6 HOH A 100 1100 106 HOH HOH . J 6 HOH A 101 1101 57 HOH HOH . J 6 HOH A 102 1102 110 HOH HOH . J 6 HOH A 103 1103 92 HOH HOH . J 6 HOH A 104 1104 97 HOH HOH . J 6 HOH A 105 1105 86 HOH HOH . J 6 HOH A 106 1106 115 HOH HOH . J 6 HOH A 107 1107 70 HOH HOH . J 6 HOH A 108 1108 56 HOH HOH . J 6 HOH A 109 1109 113 HOH HOH . J 6 HOH A 110 1110 83 HOH HOH . J 6 HOH A 111 1111 104 HOH HOH . J 6 HOH A 112 1112 98 HOH HOH . J 6 HOH A 113 1113 76 HOH HOH . J 6 HOH A 114 1114 90 HOH HOH . J 6 HOH A 115 1115 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DCP . . . G 5 15.669 44.302 35.764 1 90.39 ? N1 DCP 904 A 1 HETATM 2 C C2 DCP . . . G 5 15.04 43.412 34.715 1 91.73 ? C2 DCP 904 A 1 HETATM 3 N N3 DCP . . . G 5 14.954 41.949 34.941 1 84.35 ? N3 DCP 904 A 1 HETATM 4 C C4 DCP . . . G 5 15.469 41.377 36.161 1 81.88 ? C4 DCP 904 A 1 HETATM 5 C C5 DCP . . . G 5 16.095 42.231 37.207 1 82.82 ? C5 DCP 904 A 1 HETATM 6 C C6 DCP . . . G 5 16.187 43.704 36.996 1 85.36 ? C6 DCP 904 A 1 HETATM 7 O O2 DCP . . . G 5 14.604 43.832 33.688 1 99.2 ? O2 DCP 904 A 1 HETATM 8 N N4 DCP . . . G 5 15.362 39.948 36.342 1 77.68 ? N4 DCP 904 A 1 HETATM 9 C C1' DCP . . . G 5 15.748 45.739 35.534 1 86.3 ? C1' DCP 904 A 1 HETATM 10 C C2' DCP . . . G 5 16.728 46.34 36.181 1 86.64 ? C2' DCP 904 A 1 HETATM 11 C C3' DCP . . . G 5 17.284 47.513 35.193 1 93.38 ? C3' DCP 904 A 1 HETATM 12 C C4' DCP . . . G 5 16.854 47.295 33.912 1 92.17 ? C4' DCP 904 A 1 HETATM 13 O O4' DCP . . . G 5 16.086 45.991 33.998 1 86.37 ? O4' DCP 904 A 1 HETATM 14 O O3' DCP . . . G 5 16.936 48.816 35.653 1 102.66 ? O3' DCP 904 A 1 HETATM 15 C C5' DCP . . . G 5 18.036 47.171 32.94 1 101.52 ? C5' DCP 904 A 1 HETATM 16 O O5' DCP . . . G 5 17.671 46.81 31.633 1 104.06 ? O5' DCP 904 A 1 # _model_server_stats.io_time_ms 94 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #