data_7K5V # _model_server_result.job_id SgXYhLMTmbt3uFQvLWfpqQ _model_server_result.datetime_utc '2024-11-01 01:30:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k5v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 7K5V # _exptl.entry_id 7K5V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 288.297 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NAPHTHALENE-2,6-DISULFONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7K5V _cell.length_a 122.922 _cell.length_b 122.922 _cell.length_c 161.143 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K5V _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall 'P 65 2 (x,y,z+1/12)' _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 51 A PHE 72 1_555 A N KCX 52 A KCX 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C KCX 52 A KCX 73 1_555 A N ILE 53 A ILE 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 B C PHE 51 B PHE 72 1_555 B N KCX 52 B KCX 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 B C KCX 52 B KCX 73 1_555 B N ILE 53 B ILE 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A O ILE 91 A ILE 112 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? metalc ? metalc2 A O LEU 137 A LEU 158 1_555 F NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc3 A O ALA 173 A ALA 194 1_555 E NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc4 A OG SER 191 A SER 212 1_555 F NA NA . A NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? metalc ? metalc5 B O LEU 60 B LEU 81 1_555 I NA NA . B NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc6 B O VAL 65 B VAL 86 1_555 I NA NA . B NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc7 B OG SER 191 B SER 212 1_555 J NA NA . B NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc8 B O ILE 194 B ILE 215 1_555 J NA NA . B NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.902 ? metalc ? metalc9 B O PRO 196 B PRO 217 1_555 J NA NA . B NA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? # _chem_comp.formula 'C10 H8 O6 S2' _chem_comp.formula_weight 288.297 _chem_comp.id BIH _chem_comp.mon_nstd_flag . _chem_comp.name 'NAPHTHALENE-2,6-DISULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2,6-NAPHTHALENEDISULFONIC ACID;2,6-NAPHTHALENEDISULPHONIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O31 S3 BIH doub 70 n n S3 O32 BIH doub 71 n n S3 O3 BIH sing 72 n n S3 C2 BIH sing 73 n n O3 HO3 BIH sing 74 n n C2 C1 BIH doub 75 n y C2 C4 BIH sing 76 n y C1 C BIH sing 77 n y C1 H1 BIH sing 78 n n C C8A BIH doub 79 n y C H BIH sing 80 n n C8A C5 BIH sing 81 n y C8A C4A BIH sing 82 n y C5 C7 BIH doub 83 n y C5 H5 BIH sing 84 n n C4A C4 BIH doub 85 n y C4A C9 BIH sing 86 n y C4 H4 BIH sing 87 n n C9 C8 BIH doub 88 n y C9 H9 BIH sing 89 n n C8 C7 BIH sing 90 n y C8 H8 BIH sing 91 n n C7 S6 BIH sing 92 n n S6 O6 BIH sing 93 n n S6 O61 BIH doub 94 n n S6 O1 BIH doub 95 n n O6 HO6 BIH sing 96 n n # _atom_sites.entry_id 7K5V _atom_sites.fract_transf_matrix[1][1] 0.008135 _atom_sites.fract_transf_matrix[1][2] 0.004697 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009394 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006206 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BIH A 1 301 301 BIH BIH . D 3 CL A 1 302 1 CL CL . E 4 NA A 1 303 2 NA NA . F 4 NA A 1 304 3 NA NA . G 2 BIH B 1 301 301 BIH BIH . H 5 EDO B 1 302 401 EDO EDO . I 4 NA B 1 303 1 NA NA . J 4 NA B 1 304 4 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O31 BIH . . . G 2 31.117 -24.761 -39.035 1 66.36 ? O31 BIH 301 B 1 HETATM 2 S S3 BIH . . . G 2 30.681 -23.421 -39.431 1 66.66 ? S3 BIH 301 B 1 HETATM 3 O O32 BIH . . . G 2 31.784 -22.487 -39.437 1 66.91 ? O32 BIH 301 B 1 HETATM 4 O O3 BIH . . . G 2 29.542 -22.986 -38.656 1 66.69 ? O3 BIH 301 B 1 HETATM 5 C C2 BIH . . . G 2 30.128 -23.563 -41.105 1 66.68 ? C2 BIH 301 B 1 HETATM 6 C C1 BIH . . . G 2 28.957 -22.924 -41.485 1 66.55 ? C1 BIH 301 B 1 HETATM 7 C C BIH . . . G 2 28.488 -23.069 -42.756 1 66.43 ? C BIH 301 B 1 HETATM 8 C C8A BIH . . . G 2 29.177 -23.862 -43.704 1 66.38 ? C8A BIH 301 B 1 HETATM 9 C C5 BIH . . . G 2 28.705 -24.05 -45.022 1 66.43 ? C5 BIH 301 B 1 HETATM 10 C C4A BIH . . . G 2 30.377 -24.5 -43.311 1 66.46 ? C4A BIH 301 B 1 HETATM 11 C C4 BIH . . . G 2 30.839 -24.328 -41.987 1 66.59 ? C4 BIH 301 B 1 HETATM 12 C C9 BIH . . . G 2 31.062 -25.299 -44.256 1 66.55 ? C9 BIH 301 B 1 HETATM 13 C C8 BIH . . . G 2 30.583 -25.461 -45.521 1 66.62 ? C8 BIH 301 B 1 HETATM 14 C C7 BIH . . . G 2 29.404 -24.834 -45.897 1 66.67 ? C7 BIH 301 B 1 HETATM 15 S S6 BIH . . . G 2 28.801 -25.054 -47.545 1 67 ? S6 BIH 301 B 1 HETATM 16 O O6 BIH . . . G 2 27.992 -26.25 -47.532 1 67.27 ? O6 BIH 301 B 1 HETATM 17 O O61 BIH . . . G 2 29.985 -25.219 -48.398 1 66.92 ? O61 BIH 301 B 1 HETATM 18 O O1 BIH . . . G 2 28.071 -23.852 -47.876 1 66.96 ? O1 BIH 301 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #