data_7K62 # _model_server_result.job_id 4EFbCgwbTRuzn-8V1SjuHA _model_server_result.datetime_utc '2024-11-05 05:01:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k62 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 7K62 # _exptl.entry_id 7K62 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7K62 _cell.length_a 62.1 _cell.length_b 66.25 _cell.length_c 86.12 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K62 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 297 n n PA O2A NAP sing 298 n n PA O5B NAP sing 299 n n PA O3 NAP sing 300 n n O2A HOA2 NAP sing 301 n n O5B C5B NAP sing 302 n n C5B C4B NAP sing 303 n n C5B H51A NAP sing 304 n n C5B H52A NAP sing 305 n n C4B O4B NAP sing 306 n n C4B C3B NAP sing 307 n n C4B H4B NAP sing 308 n n O4B C1B NAP sing 309 n n C3B O3B NAP sing 310 n n C3B C2B NAP sing 311 n n C3B H3B NAP sing 312 n n O3B HO3A NAP sing 313 n n C2B O2B NAP sing 314 n n C2B C1B NAP sing 315 n n C2B H2B NAP sing 316 n n O2B P2B NAP sing 317 n n C1B N9A NAP sing 318 n n C1B H1B NAP sing 319 n n N9A C8A NAP sing 320 n y N9A C4A NAP sing 321 n y C8A N7A NAP doub 322 n y C8A H8A NAP sing 323 n n N7A C5A NAP sing 324 n y C5A C6A NAP sing 325 n y C5A C4A NAP doub 326 n y C6A N6A NAP sing 327 n n C6A N1A NAP doub 328 n y N6A H61A NAP sing 329 n n N6A H62A NAP sing 330 n n N1A C2A NAP sing 331 n y C2A N3A NAP doub 332 n y C2A H2A NAP sing 333 n n N3A C4A NAP sing 334 n y O3 PN NAP sing 335 n n PN O1N NAP doub 336 n n PN O2N NAP sing 337 n n PN O5D NAP sing 338 n n O5D C5D NAP sing 339 n n C5D C4D NAP sing 340 n n C5D H51N NAP sing 341 n n C5D H52N NAP sing 342 n n C4D O4D NAP sing 343 n n C4D C3D NAP sing 344 n n C4D H4D NAP sing 345 n n O4D C1D NAP sing 346 n n C3D O3D NAP sing 347 n n C3D C2D NAP sing 348 n n C3D H3D NAP sing 349 n n O3D HO3N NAP sing 350 n n C2D O2D NAP sing 351 n n C2D C1D NAP sing 352 n n C2D H2D NAP sing 353 n n O2D HO2N NAP sing 354 n n C1D N1N NAP sing 355 n n C1D H1D NAP sing 356 n n N1N C2N NAP sing 357 n y N1N C6N NAP doub 358 n y C2N C3N NAP doub 359 n y C2N H2N NAP sing 360 n n C3N C7N NAP sing 361 n n C3N C4N NAP sing 362 n y C7N O7N NAP doub 363 n n C7N N7N NAP sing 364 n n N7N H71N NAP sing 365 n n N7N H72N NAP sing 366 n n C4N C5N NAP doub 367 n y C4N H4N NAP sing 368 n n C5N C6N NAP sing 369 n y C5N H5N NAP sing 370 n n C6N H6N NAP sing 371 n n P2B O1X NAP doub 372 n n P2B O2X NAP sing 373 n n P2B O3X NAP sing 374 n n O2X HOP2 NAP sing 375 n n O3X HOP3 NAP sing 376 n n # _atom_sites.entry_id 7K62 _atom_sites.fract_transf_matrix[1][1] 0.016103 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011612 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 201 200 NAP NAP . D 3 MMV A 1 202 201 MMV 218 . E 4 EDO A 1 203 301 EDO EDO . F 2 NAP B 1 201 200 NAP NAP . G 3 MMV B 1 202 201 MMV 218 . H 4 EDO B 1 203 301 EDO EDO . I 5 HOH A 1 301 101 HOH HOH . I 5 HOH A 2 302 77 HOH HOH . I 5 HOH A 3 303 102 HOH HOH . I 5 HOH A 4 304 16 HOH HOH . I 5 HOH A 5 305 23 HOH HOH . I 5 HOH A 6 306 40 HOH HOH . I 5 HOH A 7 307 72 HOH HOH . I 5 HOH A 8 308 47 HOH HOH . I 5 HOH A 9 309 37 HOH HOH . I 5 HOH A 10 310 55 HOH HOH . I 5 HOH A 11 311 4 HOH HOH . I 5 HOH A 12 312 28 HOH HOH . I 5 HOH A 13 313 53 HOH HOH . I 5 HOH A 14 314 51 HOH HOH . I 5 HOH A 15 315 87 HOH HOH . I 5 HOH A 16 316 56 HOH HOH . I 5 HOH A 17 317 2 HOH HOH . I 5 HOH A 18 318 15 HOH HOH . I 5 HOH A 19 319 32 HOH HOH . I 5 HOH A 20 320 13 HOH HOH . I 5 HOH A 21 321 44 HOH HOH . I 5 HOH A 22 322 52 HOH HOH . I 5 HOH A 23 323 11 HOH HOH . I 5 HOH A 24 324 117 HOH HOH . I 5 HOH A 25 325 7 HOH HOH . I 5 HOH A 26 326 112 HOH HOH . I 5 HOH A 27 327 38 HOH HOH . I 5 HOH A 28 328 58 HOH HOH . I 5 HOH A 29 329 14 HOH HOH . I 5 HOH A 30 330 74 HOH HOH . I 5 HOH A 31 331 36 HOH HOH . I 5 HOH A 32 332 1 HOH HOH . I 5 HOH A 33 333 29 HOH HOH . I 5 HOH A 34 334 68 HOH HOH . I 5 HOH A 35 335 71 HOH HOH . I 5 HOH A 36 336 113 HOH HOH . I 5 HOH A 37 337 70 HOH HOH . I 5 HOH A 38 338 59 HOH HOH . I 5 HOH A 39 339 57 HOH HOH . I 5 HOH A 40 340 116 HOH HOH . I 5 HOH A 41 341 82 HOH HOH . I 5 HOH A 42 342 73 HOH HOH . I 5 HOH A 43 343 114 HOH HOH . I 5 HOH A 44 344 35 HOH HOH . I 5 HOH A 45 345 115 HOH HOH . I 5 HOH A 46 346 21 HOH HOH . I 5 HOH A 47 347 75 HOH HOH . I 5 HOH A 48 348 50 HOH HOH . I 5 HOH A 49 349 118 HOH HOH . I 5 HOH A 50 350 33 HOH HOH . I 5 HOH A 51 351 99 HOH HOH . I 5 HOH A 52 352 46 HOH HOH . I 5 HOH A 53 353 76 HOH HOH . I 5 HOH A 54 354 48 HOH HOH . I 5 HOH A 55 355 69 HOH HOH . I 5 HOH A 56 356 31 HOH HOH . I 5 HOH A 57 357 84 HOH HOH . I 5 HOH A 58 358 86 HOH HOH . J 5 HOH B 1 301 94 HOH HOH . J 5 HOH B 2 302 42 HOH HOH . J 5 HOH B 3 303 19 HOH HOH . J 5 HOH B 4 304 18 HOH HOH . J 5 HOH B 5 305 3 HOH HOH . J 5 HOH B 6 306 12 HOH HOH . J 5 HOH B 7 307 95 HOH HOH . J 5 HOH B 8 308 96 HOH HOH . J 5 HOH B 9 309 9 HOH HOH . J 5 HOH B 10 310 6 HOH HOH . J 5 HOH B 11 311 66 HOH HOH . J 5 HOH B 12 312 34 HOH HOH . J 5 HOH B 13 313 107 HOH HOH . J 5 HOH B 14 314 60 HOH HOH . J 5 HOH B 15 315 24 HOH HOH . J 5 HOH B 16 316 17 HOH HOH . J 5 HOH B 17 317 22 HOH HOH . J 5 HOH B 18 318 30 HOH HOH . J 5 HOH B 19 319 43 HOH HOH . J 5 HOH B 20 320 119 HOH HOH . J 5 HOH B 21 321 98 HOH HOH . J 5 HOH B 22 322 41 HOH HOH . J 5 HOH B 23 323 108 HOH HOH . J 5 HOH B 24 324 110 HOH HOH . J 5 HOH B 25 325 62 HOH HOH . J 5 HOH B 26 326 10 HOH HOH . J 5 HOH B 27 327 106 HOH HOH . J 5 HOH B 28 328 92 HOH HOH . J 5 HOH B 29 329 45 HOH HOH . J 5 HOH B 30 330 27 HOH HOH . J 5 HOH B 31 331 67 HOH HOH . J 5 HOH B 32 332 109 HOH HOH . J 5 HOH B 33 333 63 HOH HOH . J 5 HOH B 34 334 8 HOH HOH . J 5 HOH B 35 335 105 HOH HOH . J 5 HOH B 36 336 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . F 2 -11.609 12.556 -12.068 1 47 ? PA NAP 201 B 1 HETATM 2 O O1A NAP . . . F 2 -11.799 14.004 -12.395 1 43.79 ? O1A NAP 201 B 1 HETATM 3 O O2A NAP . . . F 2 -10.179 12.141 -12.35 1 38.37 ? O2A NAP 201 B 1 HETATM 4 O O5B NAP . . . F 2 -11.913 12.157 -10.516 1 50.52 ? O5B NAP 201 B 1 HETATM 5 C C5B NAP . . . F 2 -13.248 12.178 -9.962 1 56.71 ? C5B NAP 201 B 1 HETATM 6 C C4B NAP . . . F 2 -13.127 11.999 -8.47 1 61.83 ? C4B NAP 201 B 1 HETATM 7 O O4B NAP . . . F 2 -12.391 13.111 -7.914 1 62.35 ? O4B NAP 201 B 1 HETATM 8 C C3B NAP . . . F 2 -14.436 11.956 -7.685 1 64.59 ? C3B NAP 201 B 1 HETATM 9 O O3B NAP . . . F 2 -15.085 10.691 -7.735 1 62.13 ? O3B NAP 201 B 1 HETATM 10 C C2B NAP . . . F 2 -13.874 12.271 -6.3 1 68.87 ? C2B NAP 201 B 1 HETATM 11 O O2B NAP . . . F 2 -13.213 11.145 -5.69 1 72.19 ? O2B NAP 201 B 1 HETATM 12 C C1B NAP . . . F 2 -12.846 13.359 -6.595 1 69.52 ? C1B NAP 201 B 1 HETATM 13 N N9A NAP . . . F 2 -13.392 14.713 -6.51 1 72.8 ? N9A NAP 201 B 1 HETATM 14 C C8A NAP . . . F 2 -14.22 15.343 -7.404 1 71.86 ? C8A NAP 201 B 1 HETATM 15 N N7A NAP . . . F 2 -14.62 16.531 -7.022 1 74.34 ? N7A NAP 201 B 1 HETATM 16 C C5A NAP . . . F 2 -14.009 16.701 -5.788 1 76.1 ? C5A NAP 201 B 1 HETATM 17 C C6A NAP . . . F 2 -14.042 17.75 -4.85 1 79.61 ? C6A NAP 201 B 1 HETATM 18 N N6A NAP . . . F 2 -14.753 18.871 -5.012 1 77.05 ? N6A NAP 201 B 1 HETATM 19 N N1A NAP . . . F 2 -13.32 17.602 -3.718 1 81.45 ? N1A NAP 201 B 1 HETATM 20 C C2A NAP . . . F 2 -12.618 16.477 -3.544 1 77.81 ? C2A NAP 201 B 1 HETATM 21 N N3A NAP . . . F 2 -12.515 15.418 -4.352 1 76.21 ? N3A NAP 201 B 1 HETATM 22 C C4A NAP . . . F 2 -13.242 15.593 -5.463 1 75.59 ? C4A NAP 201 B 1 HETATM 23 O O3 NAP . . . F 2 -12.669 11.735 -12.923 1 36.58 ? O3 NAP 201 B 1 HETATM 24 P PN NAP . . . F 2 -13.228 11.962 -14.401 1 43.5 ? PN NAP 201 B 1 HETATM 25 O O1N NAP . . . F 2 -14.202 10.904 -14.75 1 46.7 ? O1N NAP 201 B 1 HETATM 26 O O2N NAP . . . F 2 -13.644 13.379 -14.515 1 50.75 ? O2N NAP 201 B 1 HETATM 27 O O5D NAP . . . F 2 -11.888 11.712 -15.234 1 40.91 ? O5D NAP 201 B 1 HETATM 28 C C5D NAP . . . F 2 -11.215 10.432 -15.283 1 41.81 ? C5D NAP 201 B 1 HETATM 29 C C4D NAP . . . F 2 -11.126 9.987 -16.721 1 40.45 ? C4D NAP 201 B 1 HETATM 30 O O4D NAP . . . F 2 -10.364 10.959 -17.467 1 37.31 ? O4D NAP 201 B 1 HETATM 31 C C3D NAP . . . F 2 -10.454 8.628 -16.983 1 39.5 ? C3D NAP 201 B 1 HETATM 32 O O3D NAP . . . F 2 -11.068 7.942 -18.069 1 41.11 ? O3D NAP 201 B 1 HETATM 33 C C2D NAP . . . F 2 -9.032 9.03 -17.375 1 42.71 ? C2D NAP 201 B 1 HETATM 34 O O2D NAP . . . F 2 -8.423 8.106 -18.267 1 38.14 ? O2D NAP 201 B 1 HETATM 35 C C1D NAP . . . F 2 -9.299 10.333 -18.127 1 37.92 ? C1D NAP 201 B 1 HETATM 36 N N1N NAP . . . F 2 -8.097 11.283 -18.119 1 32.68 ? N1N NAP 201 B 1 HETATM 37 C C2N NAP . . . F 2 -7.638 11.745 -19.296 1 37.73 ? C2N NAP 201 B 1 HETATM 38 C C3N NAP . . . F 2 -6.594 12.653 -19.327 1 38.08 ? C3N NAP 201 B 1 HETATM 39 C C7N NAP . . . F 2 -6.089 13.241 -20.616 1 35.53 ? C7N NAP 201 B 1 HETATM 40 O O7N NAP . . . F 2 -5.222 14.145 -20.581 1 35.91 ? O7N NAP 201 B 1 HETATM 41 N N7N NAP . . . F 2 -6.632 12.814 -21.752 1 33.13 ? N7N NAP 201 B 1 HETATM 42 C C4N NAP . . . F 2 -6.014 13.041 -18.123 1 37.42 ? C4N NAP 201 B 1 HETATM 43 C C5N NAP . . . F 2 -6.495 12.536 -16.931 1 35.11 ? C5N NAP 201 B 1 HETATM 44 C C6N NAP . . . F 2 -7.551 11.655 -16.946 1 38.76 ? C6N NAP 201 B 1 HETATM 45 P P2B NAP . . . F 2 -14.013 10.188 -4.69 1 69.8 ? P2B NAP 201 B 1 HETATM 46 O O1X NAP . . . F 2 -15.077 9.499 -5.51 1 62.26 ? O1X NAP 201 B 1 HETATM 47 O O2X NAP . . . F 2 -12.947 9.316 -4.059 1 70.43 ? O2X NAP 201 B 1 HETATM 48 O O3X NAP . . . F 2 -14.576 11.131 -3.619 1 77.6 ? O3X NAP 201 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #