data_7K62 # _model_server_result.job_id YRX4WwWFBBU5iRIeLVfNLw _model_server_result.datetime_utc '2024-11-24 23:44:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k62 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 7K62 # _exptl.entry_id 7K62 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 360.408 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)propanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7K62 _cell.length_a 62.1 _cell.length_b 66.25 _cell.length_c 86.12 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K62 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C18 H24 N4 O4' _chem_comp.formula_weight 360.408 _chem_comp.id MMV _chem_comp.mon_nstd_flag . _chem_comp.name '3-(2-{3-[(2,4-diamino-6-ethylpyrimidin-5-yl)oxy]propoxy}phenyl)propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N8 C3 MMV sing 246 n n C3 N4 MMV doub 247 n y C3 N2 MMV sing 248 n y N4 C5 MMV sing 249 n y N2 C1 MMV doub 250 n y C10 C9 MMV sing 251 n n C5 C9 MMV sing 252 n n C5 C6 MMV doub 253 n y O26 C24 MMV doub 254 n n O25 C24 MMV sing 255 n n C1 C6 MMV sing 256 n y C1 N7 MMV sing 257 n n C24 C23 MMV sing 258 n n C6 O11 MMV sing 259 n n C23 C22 MMV sing 260 n n O11 C12 MMV sing 261 n n C12 C13 MMV sing 262 n n C22 C17 MMV sing 263 n n C17 C18 MMV doub 264 n y C17 C16 MMV sing 265 n y C18 C19 MMV sing 266 n y O15 C16 MMV sing 267 n n O15 C14 MMV sing 268 n n C13 C14 MMV sing 269 n n C16 C21 MMV doub 270 n y C19 C20 MMV doub 271 n y C21 C20 MMV sing 272 n y N7 H1 MMV sing 273 n n N7 H2 MMV sing 274 n n N8 H3 MMV sing 275 n n N8 H4 MMV sing 276 n n C9 H5 MMV sing 277 n n C9 H6 MMV sing 278 n n C10 H7 MMV sing 279 n n C10 H8 MMV sing 280 n n C10 H9 MMV sing 281 n n C12 H10 MMV sing 282 n n C12 H11 MMV sing 283 n n C13 H12 MMV sing 284 n n C13 H13 MMV sing 285 n n C14 H14 MMV sing 286 n n C14 H15 MMV sing 287 n n C18 H16 MMV sing 288 n n C19 H17 MMV sing 289 n n C20 H18 MMV sing 290 n n C21 H19 MMV sing 291 n n C22 H20 MMV sing 292 n n C22 H21 MMV sing 293 n n C23 H22 MMV sing 294 n n C23 H23 MMV sing 295 n n O25 H24 MMV sing 296 n n # _atom_sites.entry_id 7K62 _atom_sites.fract_transf_matrix[1][1] 0.016103 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011612 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 201 200 NAP NAP . D 3 MMV A 1 202 201 MMV 218 . E 4 EDO A 1 203 301 EDO EDO . F 2 NAP B 1 201 200 NAP NAP . G 3 MMV B 1 202 201 MMV 218 . H 4 EDO B 1 203 301 EDO EDO . I 5 HOH A 1 301 101 HOH HOH . I 5 HOH A 2 302 77 HOH HOH . I 5 HOH A 3 303 102 HOH HOH . I 5 HOH A 4 304 16 HOH HOH . I 5 HOH A 5 305 23 HOH HOH . I 5 HOH A 6 306 40 HOH HOH . I 5 HOH A 7 307 72 HOH HOH . I 5 HOH A 8 308 47 HOH HOH . I 5 HOH A 9 309 37 HOH HOH . I 5 HOH A 10 310 55 HOH HOH . I 5 HOH A 11 311 4 HOH HOH . I 5 HOH A 12 312 28 HOH HOH . I 5 HOH A 13 313 53 HOH HOH . I 5 HOH A 14 314 51 HOH HOH . I 5 HOH A 15 315 87 HOH HOH . I 5 HOH A 16 316 56 HOH HOH . I 5 HOH A 17 317 2 HOH HOH . I 5 HOH A 18 318 15 HOH HOH . I 5 HOH A 19 319 32 HOH HOH . I 5 HOH A 20 320 13 HOH HOH . I 5 HOH A 21 321 44 HOH HOH . I 5 HOH A 22 322 52 HOH HOH . I 5 HOH A 23 323 11 HOH HOH . I 5 HOH A 24 324 117 HOH HOH . I 5 HOH A 25 325 7 HOH HOH . I 5 HOH A 26 326 112 HOH HOH . I 5 HOH A 27 327 38 HOH HOH . I 5 HOH A 28 328 58 HOH HOH . I 5 HOH A 29 329 14 HOH HOH . I 5 HOH A 30 330 74 HOH HOH . I 5 HOH A 31 331 36 HOH HOH . I 5 HOH A 32 332 1 HOH HOH . I 5 HOH A 33 333 29 HOH HOH . I 5 HOH A 34 334 68 HOH HOH . I 5 HOH A 35 335 71 HOH HOH . I 5 HOH A 36 336 113 HOH HOH . I 5 HOH A 37 337 70 HOH HOH . I 5 HOH A 38 338 59 HOH HOH . I 5 HOH A 39 339 57 HOH HOH . I 5 HOH A 40 340 116 HOH HOH . I 5 HOH A 41 341 82 HOH HOH . I 5 HOH A 42 342 73 HOH HOH . I 5 HOH A 43 343 114 HOH HOH . I 5 HOH A 44 344 35 HOH HOH . I 5 HOH A 45 345 115 HOH HOH . I 5 HOH A 46 346 21 HOH HOH . I 5 HOH A 47 347 75 HOH HOH . I 5 HOH A 48 348 50 HOH HOH . I 5 HOH A 49 349 118 HOH HOH . I 5 HOH A 50 350 33 HOH HOH . I 5 HOH A 51 351 99 HOH HOH . I 5 HOH A 52 352 46 HOH HOH . I 5 HOH A 53 353 76 HOH HOH . I 5 HOH A 54 354 48 HOH HOH . I 5 HOH A 55 355 69 HOH HOH . I 5 HOH A 56 356 31 HOH HOH . I 5 HOH A 57 357 84 HOH HOH . I 5 HOH A 58 358 86 HOH HOH . J 5 HOH B 1 301 94 HOH HOH . J 5 HOH B 2 302 42 HOH HOH . J 5 HOH B 3 303 19 HOH HOH . J 5 HOH B 4 304 18 HOH HOH . J 5 HOH B 5 305 3 HOH HOH . J 5 HOH B 6 306 12 HOH HOH . J 5 HOH B 7 307 95 HOH HOH . J 5 HOH B 8 308 96 HOH HOH . J 5 HOH B 9 309 9 HOH HOH . J 5 HOH B 10 310 6 HOH HOH . J 5 HOH B 11 311 66 HOH HOH . J 5 HOH B 12 312 34 HOH HOH . J 5 HOH B 13 313 107 HOH HOH . J 5 HOH B 14 314 60 HOH HOH . J 5 HOH B 15 315 24 HOH HOH . J 5 HOH B 16 316 17 HOH HOH . J 5 HOH B 17 317 22 HOH HOH . J 5 HOH B 18 318 30 HOH HOH . J 5 HOH B 19 319 43 HOH HOH . J 5 HOH B 20 320 119 HOH HOH . J 5 HOH B 21 321 98 HOH HOH . J 5 HOH B 22 322 41 HOH HOH . J 5 HOH B 23 323 108 HOH HOH . J 5 HOH B 24 324 110 HOH HOH . J 5 HOH B 25 325 62 HOH HOH . J 5 HOH B 26 326 10 HOH HOH . J 5 HOH B 27 327 106 HOH HOH . J 5 HOH B 28 328 92 HOH HOH . J 5 HOH B 29 329 45 HOH HOH . J 5 HOH B 30 330 27 HOH HOH . J 5 HOH B 31 331 67 HOH HOH . J 5 HOH B 32 332 109 HOH HOH . J 5 HOH B 33 333 63 HOH HOH . J 5 HOH B 34 334 8 HOH HOH . J 5 HOH B 35 335 105 HOH HOH . J 5 HOH B 36 336 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MMV . . . D 3 28.499 21.327 -24.06 1 33.94 ? C1 MMV 202 A 1 HETATM 2 N N2 MMV . . . D 3 28.93 20.495 -23.104 1 32.93 ? N2 MMV 202 A 1 HETATM 3 C C3 MMV . . . D 3 29.528 21.059 -22.057 1 35.23 ? C3 MMV 202 A 1 HETATM 4 N N4 MMV . . . D 3 29.746 22.385 -21.876 1 28.68 ? N4 MMV 202 A 1 HETATM 5 C C5 MMV . . . D 3 29.31 23.224 -22.828 1 32.39 ? C5 MMV 202 A 1 HETATM 6 C C6 MMV . . . D 3 28.711 22.752 -23.932 1 31.53 ? C6 MMV 202 A 1 HETATM 7 N N7 MMV . . . D 3 27.895 20.85 -25.129 1 31.68 ? N7 MMV 202 A 1 HETATM 8 N N8 MMV . . . D 3 29.954 20.207 -21.095 1 31.29 ? N8 MMV 202 A 1 HETATM 9 C C9 MMV . . . D 3 29.544 24.727 -22.633 1 30.27 ? C9 MMV 202 A 1 HETATM 10 C C10 MMV . . . D 3 31.049 25.059 -22.714 1 29.55 ? C10 MMV 202 A 1 HETATM 11 O O11 MMV . . . D 3 28.249 23.612 -24.921 1 31.34 ? O11 MMV 202 A 1 HETATM 12 C C12 MMV . . . D 3 29.008 23.814 -26.144 1 32.86 ? C12 MMV 202 A 1 HETATM 13 C C13 MMV . . . D 3 28.401 24.985 -26.929 1 33.97 ? C13 MMV 202 A 1 HETATM 14 C C14 MMV . . . D 3 28.561 26.323 -26.191 1 34.05 ? C14 MMV 202 A 1 HETATM 15 O O15 MMV . . . D 3 29.972 26.587 -25.992 1 37.2 ? O15 MMV 202 A 1 HETATM 16 C C16 MMV . . . D 3 30.452 27.817 -25.538 1 34.76 ? C16 MMV 202 A 1 HETATM 17 C C17 MMV . . . D 3 31.816 28.104 -25.689 1 38.65 ? C17 MMV 202 A 1 HETATM 18 C C18 MMV . . . D 3 32.265 29.345 -25.236 1 40.88 ? C18 MMV 202 A 1 HETATM 19 C C19 MMV . . . D 3 31.389 30.257 -24.661 1 38.45 ? C19 MMV 202 A 1 HETATM 20 C C20 MMV . . . D 3 30.043 29.952 -24.518 1 38.21 ? C20 MMV 202 A 1 HETATM 21 C C21 MMV . . . D 3 29.577 28.729 -24.961 1 38.2 ? C21 MMV 202 A 1 HETATM 22 C C22 MMV . . . D 3 32.792 27.11 -26.324 1 38.54 ? C22 MMV 202 A 1 HETATM 23 C C23 MMV . . . D 3 34.129 27.614 -26.918 1 43.16 ? C23 MMV 202 A 1 HETATM 24 C C24 MMV . . . D 3 35.1 26.425 -27.251 1 44.8 ? C24 MMV 202 A 1 HETATM 25 O O25 MMV . . . D 3 36.175 26.642 -27.86 1 42.86 ? O25 MMV 202 A 1 HETATM 26 O O26 MMV . . . D 3 34.694 25.304 -26.851 1 39.46 ? O26 MMV 202 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 450 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #