data_7K62 # _model_server_result.job_id -_bZg4YPDLIGr1x8u67QaQ _model_server_result.datetime_utc '2024-11-05 05:03:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k62 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":203}' # _entry.id 7K62 # _exptl.entry_id 7K62 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7K62 _cell.length_a 62.1 _cell.length_b 66.25 _cell.length_c 86.12 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K62 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7K62 _atom_sites.fract_transf_matrix[1][1] 0.016103 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015094 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011612 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 201 200 NAP NAP . D 3 MMV A 1 202 201 MMV 218 . E 4 EDO A 1 203 301 EDO EDO . F 2 NAP B 1 201 200 NAP NAP . G 3 MMV B 1 202 201 MMV 218 . H 4 EDO B 1 203 301 EDO EDO . I 5 HOH A 1 301 101 HOH HOH . I 5 HOH A 2 302 77 HOH HOH . I 5 HOH A 3 303 102 HOH HOH . I 5 HOH A 4 304 16 HOH HOH . I 5 HOH A 5 305 23 HOH HOH . I 5 HOH A 6 306 40 HOH HOH . I 5 HOH A 7 307 72 HOH HOH . I 5 HOH A 8 308 47 HOH HOH . I 5 HOH A 9 309 37 HOH HOH . I 5 HOH A 10 310 55 HOH HOH . I 5 HOH A 11 311 4 HOH HOH . I 5 HOH A 12 312 28 HOH HOH . I 5 HOH A 13 313 53 HOH HOH . I 5 HOH A 14 314 51 HOH HOH . I 5 HOH A 15 315 87 HOH HOH . I 5 HOH A 16 316 56 HOH HOH . I 5 HOH A 17 317 2 HOH HOH . I 5 HOH A 18 318 15 HOH HOH . I 5 HOH A 19 319 32 HOH HOH . I 5 HOH A 20 320 13 HOH HOH . I 5 HOH A 21 321 44 HOH HOH . I 5 HOH A 22 322 52 HOH HOH . I 5 HOH A 23 323 11 HOH HOH . I 5 HOH A 24 324 117 HOH HOH . I 5 HOH A 25 325 7 HOH HOH . I 5 HOH A 26 326 112 HOH HOH . I 5 HOH A 27 327 38 HOH HOH . I 5 HOH A 28 328 58 HOH HOH . I 5 HOH A 29 329 14 HOH HOH . I 5 HOH A 30 330 74 HOH HOH . I 5 HOH A 31 331 36 HOH HOH . I 5 HOH A 32 332 1 HOH HOH . I 5 HOH A 33 333 29 HOH HOH . I 5 HOH A 34 334 68 HOH HOH . I 5 HOH A 35 335 71 HOH HOH . I 5 HOH A 36 336 113 HOH HOH . I 5 HOH A 37 337 70 HOH HOH . I 5 HOH A 38 338 59 HOH HOH . I 5 HOH A 39 339 57 HOH HOH . I 5 HOH A 40 340 116 HOH HOH . I 5 HOH A 41 341 82 HOH HOH . I 5 HOH A 42 342 73 HOH HOH . I 5 HOH A 43 343 114 HOH HOH . I 5 HOH A 44 344 35 HOH HOH . I 5 HOH A 45 345 115 HOH HOH . I 5 HOH A 46 346 21 HOH HOH . I 5 HOH A 47 347 75 HOH HOH . I 5 HOH A 48 348 50 HOH HOH . I 5 HOH A 49 349 118 HOH HOH . I 5 HOH A 50 350 33 HOH HOH . I 5 HOH A 51 351 99 HOH HOH . I 5 HOH A 52 352 46 HOH HOH . I 5 HOH A 53 353 76 HOH HOH . I 5 HOH A 54 354 48 HOH HOH . I 5 HOH A 55 355 69 HOH HOH . I 5 HOH A 56 356 31 HOH HOH . I 5 HOH A 57 357 84 HOH HOH . I 5 HOH A 58 358 86 HOH HOH . J 5 HOH B 1 301 94 HOH HOH . J 5 HOH B 2 302 42 HOH HOH . J 5 HOH B 3 303 19 HOH HOH . J 5 HOH B 4 304 18 HOH HOH . J 5 HOH B 5 305 3 HOH HOH . J 5 HOH B 6 306 12 HOH HOH . J 5 HOH B 7 307 95 HOH HOH . J 5 HOH B 8 308 96 HOH HOH . J 5 HOH B 9 309 9 HOH HOH . J 5 HOH B 10 310 6 HOH HOH . J 5 HOH B 11 311 66 HOH HOH . J 5 HOH B 12 312 34 HOH HOH . J 5 HOH B 13 313 107 HOH HOH . J 5 HOH B 14 314 60 HOH HOH . J 5 HOH B 15 315 24 HOH HOH . J 5 HOH B 16 316 17 HOH HOH . J 5 HOH B 17 317 22 HOH HOH . J 5 HOH B 18 318 30 HOH HOH . J 5 HOH B 19 319 43 HOH HOH . J 5 HOH B 20 320 119 HOH HOH . J 5 HOH B 21 321 98 HOH HOH . J 5 HOH B 22 322 41 HOH HOH . J 5 HOH B 23 323 108 HOH HOH . J 5 HOH B 24 324 110 HOH HOH . J 5 HOH B 25 325 62 HOH HOH . J 5 HOH B 26 326 10 HOH HOH . J 5 HOH B 27 327 106 HOH HOH . J 5 HOH B 28 328 92 HOH HOH . J 5 HOH B 29 329 45 HOH HOH . J 5 HOH B 30 330 27 HOH HOH . J 5 HOH B 31 331 67 HOH HOH . J 5 HOH B 32 332 109 HOH HOH . J 5 HOH B 33 333 63 HOH HOH . J 5 HOH B 34 334 8 HOH HOH . J 5 HOH B 35 335 105 HOH HOH . J 5 HOH B 36 336 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 4 -0.655 7.904 -23.708 1 45.64 ? C1 EDO 203 B 1 HETATM 2 O O1 EDO . . . H 4 -1.298 7.87 -24.999 1 44.44 ? O1 EDO 203 B 1 HETATM 3 C C2 EDO . . . H 4 -0.361 6.501 -23.189 1 45.78 ? C2 EDO 203 B 1 HETATM 4 O O2 EDO . . . H 4 0.876 5.997 -23.721 1 53.31 ? O2 EDO 203 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #