data_7K64 # _model_server_result.job_id 2HpZy6UcK2NT-55XEjYC1A _model_server_result.datetime_utc '2024-11-26 22:39:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k64 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":401}' # _entry.id 7K64 # _exptl.entry_id 7K64 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.848 _cell.angle_gamma 90 _cell.entry_id 7K64 _cell.length_a 94.01 _cell.length_b 212.01 _cell.length_c 94.46 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K64 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,X,Y,Z,AA 1 1 E,F,G,H,O,P,Q,R,S,T,U,V,W,BA,CA,DA,EA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 L N N ? 2 N N N ? 2 O N N ? 2 U N N ? 2 W N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id E _struct_conn.ptnr1_label_atom_id OD1 _struct_conn.ptnr1_label_comp_id ASP _struct_conn.ptnr1_label_seq_id 78 _struct_conn.ptnr1_auth_asym_id E _struct_conn.ptnr1_auth_comp_id ASP _struct_conn.ptnr1_auth_seq_id 55 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id Q _struct_conn.ptnr2_label_atom_id NA _struct_conn.ptnr2_label_comp_id NA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id E _struct_conn.ptnr2_auth_comp_id NA _struct_conn.ptnr2_auth_seq_id 403 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.839 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 7K64 _atom_sites.fract_transf_matrix[1][1] 0.010637 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005859 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012086 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 FMN A 1 401 401 FMN FMN . J 3 SIN A 1 402 501 SIN SIN . K 4 PO4 B 1 501 501 PO4 PO4 . L 2 FMN C 1 401 401 FMN FMN . M 3 SIN C 1 402 501 SIN SIN . N 2 FMN D 1 401 401 FMN FMN . O 2 FMN E 1 401 401 FMN FMN . P 3 SIN E 1 402 501 SIN SIN . Q 5 NA E 1 403 502 NA NA . R 6 GOL E 1 404 601 GOL GOL . S 4 PO4 F 1 501 501 PO4 PO4 . T 6 GOL F 1 502 601 GOL GOL . U 2 FMN G 1 401 401 FMN FMN . V 7 CL G 1 402 501 CL CL . W 2 FMN H 1 401 401 FMN FMN . X 8 HOH A 1 501 1 HOH HOH . X 8 HOH A 2 502 5 HOH HOH . X 8 HOH A 3 503 6 HOH HOH . X 8 HOH A 4 504 25 HOH HOH . X 8 HOH A 5 505 24 HOH HOH . X 8 HOH A 6 506 15 HOH HOH . Y 8 HOH B 1 601 3 HOH HOH . Y 8 HOH B 2 602 34 HOH HOH . Y 8 HOH B 3 603 28 HOH HOH . Y 8 HOH B 4 604 26 HOH HOH . Y 8 HOH B 5 605 37 HOH HOH . Y 8 HOH B 6 606 36 HOH HOH . Y 8 HOH B 7 607 13 HOH HOH . Y 8 HOH B 8 608 27 HOH HOH . Z 8 HOH C 1 501 7 HOH HOH . Z 8 HOH C 2 502 12 HOH HOH . Z 8 HOH C 3 503 30 HOH HOH . Z 8 HOH C 4 504 10 HOH HOH . Z 8 HOH C 5 505 35 HOH HOH . Z 8 HOH C 6 506 29 HOH HOH . AA 8 HOH D 1 501 38 HOH HOH . AA 8 HOH D 2 502 9 HOH HOH . AA 8 HOH D 3 503 32 HOH HOH . AA 8 HOH D 4 504 20 HOH HOH . AA 8 HOH D 5 505 16 HOH HOH . AA 8 HOH D 6 506 31 HOH HOH . BA 8 HOH E 1 501 21 HOH HOH . BA 8 HOH E 2 502 17 HOH HOH . BA 8 HOH E 3 503 41 HOH HOH . BA 8 HOH E 4 504 18 HOH HOH . BA 8 HOH E 5 505 4 HOH HOH . BA 8 HOH E 6 506 8 HOH HOH . BA 8 HOH E 7 507 2 HOH HOH . BA 8 HOH E 8 508 22 HOH HOH . CA 8 HOH F 1 601 39 HOH HOH . CA 8 HOH F 2 602 40 HOH HOH . CA 8 HOH F 3 603 14 HOH HOH . DA 8 HOH G 1 501 19 HOH HOH . EA 8 HOH H 1 501 23 HOH HOH . EA 8 HOH H 2 502 33 HOH HOH . EA 8 HOH H 3 503 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . O 2 -17.596 -39.916 -15.271 0.96 65.53 ? N1 FMN 401 E 1 HETATM 2 C C2 FMN . . . O 2 -17.978 -41.081 -15.79 0.96 64.05 ? C2 FMN 401 E 1 HETATM 3 O O2 FMN . . . O 2 -17.114 -41.82 -16.231 0.96 72.56 ? O2 FMN 401 E 1 HETATM 4 N N3 FMN . . . O 2 -19.25 -41.494 -15.859 0.96 61.84 ? N3 FMN 401 E 1 HETATM 5 C C4 FMN . . . O 2 -20.262 -40.731 -15.385 0.96 62.4 ? C4 FMN 401 E 1 HETATM 6 O O4 FMN . . . O 2 -21.42 -41.098 -15.461 0.96 61.02 ? O4 FMN 401 E 1 HETATM 7 C C4A FMN . . . O 2 -19.898 -39.429 -14.782 0.96 59.84 ? C4A FMN 401 E 1 HETATM 8 N N5 FMN . . . O 2 -20.789 -38.631 -14.259 0.96 57.86 ? N5 FMN 401 E 1 HETATM 9 C C5A FMN . . . O 2 -20.423 -37.478 -13.688 0.96 54.19 ? C5A FMN 401 E 1 HETATM 10 C C6 FMN . . . O 2 -21.404 -36.671 -13.083 0.96 50.82 ? C6 FMN 401 E 1 HETATM 11 C C7 FMN . . . O 2 -21.048 -35.516 -12.459 0.96 54.09 ? C7 FMN 401 E 1 HETATM 12 C C7M FMN . . . O 2 -22.11 -34.686 -11.785 0.96 53.68 ? C7M FMN 401 E 1 HETATM 13 C C8 FMN . . . O 2 -19.716 -35.111 -12.424 0.96 52.94 ? C8 FMN 401 E 1 HETATM 14 C C8M FMN . . . O 2 -19.341 -33.832 -11.721 0.96 40.5 ? C8M FMN 401 E 1 HETATM 15 C C9 FMN . . . O 2 -18.736 -35.876 -13.016 0.96 56.12 ? C9 FMN 401 E 1 HETATM 16 C C9A FMN . . . O 2 -19.067 -37.075 -13.649 0.96 58.35 ? C9A FMN 401 E 1 HETATM 17 N N10 FMN . . . O 2 -18.089 -37.885 -14.2 0.96 58.74 ? N10 FMN 401 E 1 HETATM 18 C C10 FMN . . . O 2 -18.471 -39.066 -14.763 0.96 60.96 ? C10 FMN 401 E 1 HETATM 19 C C1' FMN . . . O 2 -16.669 -37.513 -14.18 0.96 59.24 ? C1' FMN 401 E 1 HETATM 20 C C2' FMN . . . O 2 -16.327 -36.555 -15.329 0.96 65.47 ? C2' FMN 401 E 1 HETATM 21 O O2' FMN . . . O 2 -17.306 -36.69 -16.364 0.96 57.95 ? O2' FMN 401 E 1 HETATM 22 C C3' FMN . . . O 2 -14.932 -36.849 -15.901 0.96 63.73 ? C3' FMN 401 E 1 HETATM 23 O O3' FMN . . . O 2 -14.899 -38.191 -16.399 0.96 58.75 ? O3' FMN 401 E 1 HETATM 24 C C4' FMN . . . O 2 -13.836 -36.649 -14.842 0.96 63.39 ? C4' FMN 401 E 1 HETATM 25 O O4' FMN . . . O 2 -14.224 -35.662 -13.88 0.96 65.4 ? O4' FMN 401 E 1 HETATM 26 C C5' FMN . . . O 2 -12.537 -36.192 -15.517 0.96 62.62 ? C5' FMN 401 E 1 HETATM 27 O O5' FMN . . . O 2 -12.532 -34.768 -15.651 0.96 65.64 ? O5' FMN 401 E 1 HETATM 28 P P FMN . . . O 2 -11.705 -33.765 -14.697 0.96 56.25 ? P FMN 401 E 1 HETATM 29 O O1P FMN . . . O 2 -10.283 -34.17 -14.66 0.96 66.91 ? O1P FMN 401 E 1 HETATM 30 O O2P FMN . . . O 2 -11.806 -32.278 -15.302 0.96 56.53 ? O2P FMN 401 E 1 HETATM 31 O O3P FMN . . . O 2 -12.319 -33.781 -13.208 0.96 54.71 ? O3P FMN 401 E 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 439 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #