data_7K64
#
_model_server_result.job_id            USq-cAclGcmedWqDHcqtNA 
_model_server_result.datetime_utc      '2024-11-01 19:39:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7k64 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":401}' 
#
_entry.id    7K64 
#
_exptl.entry_id    7K64 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          118.848 
_cell.angle_gamma         90 
_cell.entry_id            7K64 
_cell.length_a            94.01 
_cell.length_b            212.01 
_cell.length_c            94.46 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7K64 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M,N,X,Y,Z,AA 1 1 
E,F,G,H,O,P,Q,R,S,T,U,V,W,BA,CA,DA,EA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 L N N 
? 2 N N N 
? 2 O N N 
? 2 U N N 
? 2 W N N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            E 
_struct_conn.ptnr1_label_atom_id            OD1 
_struct_conn.ptnr1_label_comp_id            ASP 
_struct_conn.ptnr1_label_seq_id             78 
_struct_conn.ptnr1_auth_asym_id             E 
_struct_conn.ptnr1_auth_comp_id             ASP 
_struct_conn.ptnr1_auth_seq_id              55 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            Q 
_struct_conn.ptnr2_label_atom_id            NA 
_struct_conn.ptnr2_label_comp_id            NA 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             E 
_struct_conn.ptnr2_auth_comp_id             NA 
_struct_conn.ptnr2_auth_seq_id              403 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.839 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 83 n n 
N1 C10 FMN doub 84 n n 
C2 O2 FMN doub 85 n n 
C2 N3 FMN sing 86 n n 
N3 C4 FMN sing 87 n n 
N3 HN3 FMN sing 88 n n 
C4 O4 FMN doub 89 n n 
C4 C4A FMN sing 90 n n 
C4A N5 FMN doub 91 n n 
C4A C10 FMN sing 92 n n 
N5 C5A FMN sing 93 n n 
C5A C6 FMN doub 94 n y 
C5A C9A FMN sing 95 n y 
C6 C7 FMN sing 96 n y 
C6 H6 FMN sing 97 n n 
C7 C7M FMN sing 98 n n 
C7 C8 FMN doub 99 n y 
C7M HM71 FMN sing 100 n n 
C7M HM72 FMN sing 101 n n 
C7M HM73 FMN sing 102 n n 
C8 C8M FMN sing 103 n n 
C8 C9 FMN sing 104 n y 
C8M HM81 FMN sing 105 n n 
C8M HM82 FMN sing 106 n n 
C8M HM83 FMN sing 107 n n 
C9 C9A FMN doub 108 n y 
C9 H9 FMN sing 109 n n 
C9A N10 FMN sing 110 n n 
N10 C10 FMN sing 111 n n 
N10 C1' FMN sing 112 n n 
C1' C2' FMN sing 113 n n 
C1' "H1'1" FMN sing 114 n n 
C1' "H1'2" FMN sing 115 n n 
C2' O2' FMN sing 116 n n 
C2' C3' FMN sing 117 n n 
C2' H2' FMN sing 118 n n 
O2' HO2' FMN sing 119 n n 
C3' O3' FMN sing 120 n n 
C3' C4' FMN sing 121 n n 
C3' H3' FMN sing 122 n n 
O3' HO3' FMN sing 123 n n 
C4' O4' FMN sing 124 n n 
C4' C5' FMN sing 125 n n 
C4' H4' FMN sing 126 n n 
O4' HO4' FMN sing 127 n n 
C5' O5' FMN sing 128 n n 
C5' "H5'1" FMN sing 129 n n 
C5' "H5'2" FMN sing 130 n n 
O5' P FMN sing 131 n n 
P O1P FMN doub 132 n n 
P O2P FMN sing 133 n n 
P O3P FMN sing 134 n n 
O2P HOP2 FMN sing 135 n n 
O3P HOP3 FMN sing 136 n n 
#
_atom_sites.entry_id                     7K64 
_atom_sites.fract_transf_matrix[1][1]    0.010637 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005859 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004717 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012086 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 FMN A 1 401 401 FMN FMN . 
J 3 SIN A 1 402 501 SIN SIN . 
K 4 PO4 B 1 501 501 PO4 PO4 . 
L 2 FMN C 1 401 401 FMN FMN . 
M 3 SIN C 1 402 501 SIN SIN . 
N 2 FMN D 1 401 401 FMN FMN . 
O 2 FMN E 1 401 401 FMN FMN . 
P 3 SIN E 1 402 501 SIN SIN . 
Q 5 NA E 1 403 502 NA NA . 
R 6 GOL E 1 404 601 GOL GOL . 
S 4 PO4 F 1 501 501 PO4 PO4 . 
T 6 GOL F 1 502 601 GOL GOL . 
U 2 FMN G 1 401 401 FMN FMN . 
V 7 CL G 1 402 501 CL CL . 
W 2 FMN H 1 401 401 FMN FMN . 
X 8 HOH A 1 501 1 HOH HOH . 
X 8 HOH A 2 502 5 HOH HOH . 
X 8 HOH A 3 503 6 HOH HOH . 
X 8 HOH A 4 504 25 HOH HOH . 
X 8 HOH A 5 505 24 HOH HOH . 
X 8 HOH A 6 506 15 HOH HOH . 
Y 8 HOH B 1 601 3 HOH HOH . 
Y 8 HOH B 2 602 34 HOH HOH . 
Y 8 HOH B 3 603 28 HOH HOH . 
Y 8 HOH B 4 604 26 HOH HOH . 
Y 8 HOH B 5 605 37 HOH HOH . 
Y 8 HOH B 6 606 36 HOH HOH . 
Y 8 HOH B 7 607 13 HOH HOH . 
Y 8 HOH B 8 608 27 HOH HOH . 
Z 8 HOH C 1 501 7 HOH HOH . 
Z 8 HOH C 2 502 12 HOH HOH . 
Z 8 HOH C 3 503 30 HOH HOH . 
Z 8 HOH C 4 504 10 HOH HOH . 
Z 8 HOH C 5 505 35 HOH HOH . 
Z 8 HOH C 6 506 29 HOH HOH . 
AA 8 HOH D 1 501 38 HOH HOH . 
AA 8 HOH D 2 502 9 HOH HOH . 
AA 8 HOH D 3 503 32 HOH HOH . 
AA 8 HOH D 4 504 20 HOH HOH . 
AA 8 HOH D 5 505 16 HOH HOH . 
AA 8 HOH D 6 506 31 HOH HOH . 
BA 8 HOH E 1 501 21 HOH HOH . 
BA 8 HOH E 2 502 17 HOH HOH . 
BA 8 HOH E 3 503 41 HOH HOH . 
BA 8 HOH E 4 504 18 HOH HOH . 
BA 8 HOH E 5 505 4 HOH HOH . 
BA 8 HOH E 6 506 8 HOH HOH . 
BA 8 HOH E 7 507 2 HOH HOH . 
BA 8 HOH E 8 508 22 HOH HOH . 
CA 8 HOH F 1 601 39 HOH HOH . 
CA 8 HOH F 2 602 40 HOH HOH . 
CA 8 HOH F 3 603 14 HOH HOH . 
DA 8 HOH G 1 501 19 HOH HOH . 
EA 8 HOH H 1 501 23 HOH HOH . 
EA 8 HOH H 2 502 33 HOH HOH . 
EA 8 HOH H 3 503 11 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . U 2 -77.41 -53.626 -26.351 0.66 81.5 ? N1 FMN 401 G 1 
HETATM 2 C C2 FMN . . . U 2 -76.628 -54.536 -25.773 0.66 84.6 ? C2 FMN 401 G 1 
HETATM 3 O O2 FMN . . . U 2 -77.165 -55.472 -25.207 0.66 81.87 ? O2 FMN 401 G 1 
HETATM 4 N N3 FMN . . . U 2 -75.289 -54.483 -25.764 0.66 85.89 ? N3 FMN 401 G 1 
HETATM 5 C C4 FMN . . . U 2 -74.626 -53.466 -26.362 0.66 83.09 ? C4 FMN 401 G 1 
HETATM 6 O O4 FMN . . . U 2 -73.411 -53.414 -26.355 0.66 78.08 ? O4 FMN 401 G 1 
HETATM 7 C C4A FMN . . . U 2 -75.44 -52.422 -27.024 0.66 83.69 ? C4A FMN 401 G 1 
HETATM 8 N N5 FMN . . . U 2 -74.898 -51.406 -27.643 0.66 83.69 ? N5 FMN 401 G 1 
HETATM 9 C C5A FMN . . . U 2 -75.661 -50.49 -28.253 0.66 86.92 ? C5A FMN 401 G 1 
HETATM 10 C C6 FMN . . . U 2 -75.053 -49.422 -28.94 0.66 83.29 ? C6 FMN 401 G 1 
HETATM 11 C C7 FMN . . . U 2 -75.82 -48.499 -29.584 0.66 84.43 ? C7 FMN 401 G 1 
HETATM 12 C C7M FMN . . . U 2 -75.153 -47.368 -30.322 0.66 77.8 ? C7M FMN 401 G 1 
HETATM 13 C C8 FMN . . . U 2 -77.209 -48.598 -29.568 0.66 89.92 ? C8 FMN 401 G 1 
HETATM 14 C C8M FMN . . . U 2 -78.043 -47.575 -30.296 0.66 88.17 ? C8M FMN 401 G 1 
HETATM 15 C C9 FMN . . . U 2 -77.832 -49.629 -28.899 0.66 92.44 ? C9 FMN 401 G 1 
HETATM 16 C C9A FMN . . . U 2 -77.072 -50.589 -28.237 0.66 90.15 ? C9A FMN 401 G 1 
HETATM 17 N N10 FMN . . . U 2 -77.688 -51.641 -27.589 0.66 85.77 ? N10 FMN 401 G 1 
HETATM 18 C C10 FMN . . . U 2 -76.905 -52.575 -26.976 0.66 84.53 ? C10 FMN 401 G 1 
HETATM 19 C C1' FMN . . . U 2 -79.149 -51.763 -27.58 0.66 90.21 ? C1' FMN 401 G 1 
HETATM 20 C C2' FMN . . . U 2 -79.756 -51.177 -26.299 0.66 92.41 ? C2' FMN 401 G 1 
HETATM 21 O O2' FMN . . . U 2 -79.516 -52.05 -25.194 0.66 92.83 ? O2' FMN 401 G 1 
HETATM 22 C C3' FMN . . . U 2 -81.267 -50.994 -26.483 0.66 97.24 ? C3' FMN 401 G 1 
HETATM 23 O O3' FMN . . . U 2 -81.728 -49.987 -25.579 0.66 99.4 ? O3' FMN 401 G 1 
HETATM 24 C C4' FMN . . . U 2 -82.018 -52.298 -26.199 0.66 96.34 ? C4' FMN 401 G 1 
HETATM 25 O O4' FMN . . . U 2 -81.881 -53.205 -27.296 0.66 92.43 ? O4' FMN 401 G 1 
HETATM 26 C C5' FMN . . . U 2 -83.503 -51.981 -26.005 0.66 104.37 ? C5' FMN 401 G 1 
HETATM 27 O O5' FMN . . . U 2 -83.898 -50.99 -26.956 0.66 104.61 ? O5' FMN 401 G 1 
HETATM 28 P P FMN . . . U 2 -85.425 -50.756 -27.413 0.66 104.75 ? P FMN 401 G 1 
HETATM 29 O O1P FMN . . . U 2 -86.255 -51.901 -26.979 0.66 101.11 ? O1P FMN 401 G 1 
HETATM 30 O O2P FMN . . . U 2 -85.983 -49.403 -26.742 0.66 111.04 ? O2P FMN 401 G 1 
HETATM 31 O O3P FMN . . . U 2 -85.493 -50.624 -29.016 0.66 104.61 ? O3P FMN 401 G 1 
#
_model_server_stats.io_time_ms              73 
_model_server_stats.parse_time_ms           28 
_model_server_stats.create_model_time_ms    101 
_model_server_stats.query_time_ms           613 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           31 
#