data_7K64 # _model_server_result.job_id 7f0RhOosqXxny6jJFsDaDg _model_server_result.datetime_utc '2024-11-30 06:07:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k64 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":401}' # _entry.id 7K64 # _exptl.entry_id 7K64 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.848 _cell.angle_gamma 90 _cell.entry_id 7K64 _cell.length_a 94.01 _cell.length_b 212.01 _cell.length_c 94.46 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K64 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,X,Y,Z,AA 1 1 E,F,G,H,O,P,Q,R,S,T,U,V,W,BA,CA,DA,EA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 L N N ? 2 N N N ? 2 O N N ? 2 U N N ? 2 W N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id E _struct_conn.ptnr1_label_atom_id OD1 _struct_conn.ptnr1_label_comp_id ASP _struct_conn.ptnr1_label_seq_id 78 _struct_conn.ptnr1_auth_asym_id E _struct_conn.ptnr1_auth_comp_id ASP _struct_conn.ptnr1_auth_seq_id 55 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id Q _struct_conn.ptnr2_label_atom_id NA _struct_conn.ptnr2_label_comp_id NA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id E _struct_conn.ptnr2_auth_comp_id NA _struct_conn.ptnr2_auth_seq_id 403 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.839 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 7K64 _atom_sites.fract_transf_matrix[1][1] 0.010637 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005859 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012086 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 FMN A 1 401 401 FMN FMN . J 3 SIN A 1 402 501 SIN SIN . K 4 PO4 B 1 501 501 PO4 PO4 . L 2 FMN C 1 401 401 FMN FMN . M 3 SIN C 1 402 501 SIN SIN . N 2 FMN D 1 401 401 FMN FMN . O 2 FMN E 1 401 401 FMN FMN . P 3 SIN E 1 402 501 SIN SIN . Q 5 NA E 1 403 502 NA NA . R 6 GOL E 1 404 601 GOL GOL . S 4 PO4 F 1 501 501 PO4 PO4 . T 6 GOL F 1 502 601 GOL GOL . U 2 FMN G 1 401 401 FMN FMN . V 7 CL G 1 402 501 CL CL . W 2 FMN H 1 401 401 FMN FMN . X 8 HOH A 1 501 1 HOH HOH . X 8 HOH A 2 502 5 HOH HOH . X 8 HOH A 3 503 6 HOH HOH . X 8 HOH A 4 504 25 HOH HOH . X 8 HOH A 5 505 24 HOH HOH . X 8 HOH A 6 506 15 HOH HOH . Y 8 HOH B 1 601 3 HOH HOH . Y 8 HOH B 2 602 34 HOH HOH . Y 8 HOH B 3 603 28 HOH HOH . Y 8 HOH B 4 604 26 HOH HOH . Y 8 HOH B 5 605 37 HOH HOH . Y 8 HOH B 6 606 36 HOH HOH . Y 8 HOH B 7 607 13 HOH HOH . Y 8 HOH B 8 608 27 HOH HOH . Z 8 HOH C 1 501 7 HOH HOH . Z 8 HOH C 2 502 12 HOH HOH . Z 8 HOH C 3 503 30 HOH HOH . Z 8 HOH C 4 504 10 HOH HOH . Z 8 HOH C 5 505 35 HOH HOH . Z 8 HOH C 6 506 29 HOH HOH . AA 8 HOH D 1 501 38 HOH HOH . AA 8 HOH D 2 502 9 HOH HOH . AA 8 HOH D 3 503 32 HOH HOH . AA 8 HOH D 4 504 20 HOH HOH . AA 8 HOH D 5 505 16 HOH HOH . AA 8 HOH D 6 506 31 HOH HOH . BA 8 HOH E 1 501 21 HOH HOH . BA 8 HOH E 2 502 17 HOH HOH . BA 8 HOH E 3 503 41 HOH HOH . BA 8 HOH E 4 504 18 HOH HOH . BA 8 HOH E 5 505 4 HOH HOH . BA 8 HOH E 6 506 8 HOH HOH . BA 8 HOH E 7 507 2 HOH HOH . BA 8 HOH E 8 508 22 HOH HOH . CA 8 HOH F 1 601 39 HOH HOH . CA 8 HOH F 2 602 40 HOH HOH . CA 8 HOH F 3 603 14 HOH HOH . DA 8 HOH G 1 501 19 HOH HOH . EA 8 HOH H 1 501 23 HOH HOH . EA 8 HOH H 2 502 33 HOH HOH . EA 8 HOH H 3 503 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . U 2 -77.41 -53.626 -26.351 0.66 81.5 ? N1 FMN 401 G 1 HETATM 2 C C2 FMN . . . U 2 -76.628 -54.536 -25.773 0.66 84.6 ? C2 FMN 401 G 1 HETATM 3 O O2 FMN . . . U 2 -77.165 -55.472 -25.207 0.66 81.87 ? O2 FMN 401 G 1 HETATM 4 N N3 FMN . . . U 2 -75.289 -54.483 -25.764 0.66 85.89 ? N3 FMN 401 G 1 HETATM 5 C C4 FMN . . . U 2 -74.626 -53.466 -26.362 0.66 83.09 ? C4 FMN 401 G 1 HETATM 6 O O4 FMN . . . U 2 -73.411 -53.414 -26.355 0.66 78.08 ? O4 FMN 401 G 1 HETATM 7 C C4A FMN . . . U 2 -75.44 -52.422 -27.024 0.66 83.69 ? C4A FMN 401 G 1 HETATM 8 N N5 FMN . . . U 2 -74.898 -51.406 -27.643 0.66 83.69 ? N5 FMN 401 G 1 HETATM 9 C C5A FMN . . . U 2 -75.661 -50.49 -28.253 0.66 86.92 ? C5A FMN 401 G 1 HETATM 10 C C6 FMN . . . U 2 -75.053 -49.422 -28.94 0.66 83.29 ? C6 FMN 401 G 1 HETATM 11 C C7 FMN . . . U 2 -75.82 -48.499 -29.584 0.66 84.43 ? C7 FMN 401 G 1 HETATM 12 C C7M FMN . . . U 2 -75.153 -47.368 -30.322 0.66 77.8 ? C7M FMN 401 G 1 HETATM 13 C C8 FMN . . . U 2 -77.209 -48.598 -29.568 0.66 89.92 ? C8 FMN 401 G 1 HETATM 14 C C8M FMN . . . U 2 -78.043 -47.575 -30.296 0.66 88.17 ? C8M FMN 401 G 1 HETATM 15 C C9 FMN . . . U 2 -77.832 -49.629 -28.899 0.66 92.44 ? C9 FMN 401 G 1 HETATM 16 C C9A FMN . . . U 2 -77.072 -50.589 -28.237 0.66 90.15 ? C9A FMN 401 G 1 HETATM 17 N N10 FMN . . . U 2 -77.688 -51.641 -27.589 0.66 85.77 ? N10 FMN 401 G 1 HETATM 18 C C10 FMN . . . U 2 -76.905 -52.575 -26.976 0.66 84.53 ? C10 FMN 401 G 1 HETATM 19 C C1' FMN . . . U 2 -79.149 -51.763 -27.58 0.66 90.21 ? C1' FMN 401 G 1 HETATM 20 C C2' FMN . . . U 2 -79.756 -51.177 -26.299 0.66 92.41 ? C2' FMN 401 G 1 HETATM 21 O O2' FMN . . . U 2 -79.516 -52.05 -25.194 0.66 92.83 ? O2' FMN 401 G 1 HETATM 22 C C3' FMN . . . U 2 -81.267 -50.994 -26.483 0.66 97.24 ? C3' FMN 401 G 1 HETATM 23 O O3' FMN . . . U 2 -81.728 -49.987 -25.579 0.66 99.4 ? O3' FMN 401 G 1 HETATM 24 C C4' FMN . . . U 2 -82.018 -52.298 -26.199 0.66 96.34 ? C4' FMN 401 G 1 HETATM 25 O O4' FMN . . . U 2 -81.881 -53.205 -27.296 0.66 92.43 ? O4' FMN 401 G 1 HETATM 26 C C5' FMN . . . U 2 -83.503 -51.981 -26.005 0.66 104.37 ? C5' FMN 401 G 1 HETATM 27 O O5' FMN . . . U 2 -83.898 -50.99 -26.956 0.66 104.61 ? O5' FMN 401 G 1 HETATM 28 P P FMN . . . U 2 -85.425 -50.756 -27.413 0.66 104.75 ? P FMN 401 G 1 HETATM 29 O O1P FMN . . . U 2 -86.255 -51.901 -26.979 0.66 101.11 ? O1P FMN 401 G 1 HETATM 30 O O2P FMN . . . U 2 -85.983 -49.403 -26.742 0.66 111.04 ? O2P FMN 401 G 1 HETATM 31 O O3P FMN . . . U 2 -85.493 -50.624 -29.016 0.66 104.61 ? O3P FMN 401 G 1 # _model_server_stats.io_time_ms 294 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 453 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #