data_7K64 # _model_server_result.job_id LS92w47vG1XvUaDHIT52nQ _model_server_result.datetime_utc '2024-11-26 22:40:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k64 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":404}' # _entry.id 7K64 # _exptl.entry_id 7K64 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 118.848 _cell.angle_gamma 90 _cell.entry_id 7K64 _cell.length_a 94.01 _cell.length_b 212.01 _cell.length_c 94.46 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K64 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,X,Y,Z,AA 1 1 E,F,G,H,O,P,Q,R,S,T,U,V,W,BA,CA,DA,EA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 R N N ? 6 T N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id E _struct_conn.ptnr1_label_atom_id OD1 _struct_conn.ptnr1_label_comp_id ASP _struct_conn.ptnr1_label_seq_id 78 _struct_conn.ptnr1_auth_asym_id E _struct_conn.ptnr1_auth_comp_id ASP _struct_conn.ptnr1_auth_seq_id 55 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id Q _struct_conn.ptnr2_label_atom_id NA _struct_conn.ptnr2_label_comp_id NA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id E _struct_conn.ptnr2_auth_comp_id NA _struct_conn.ptnr2_auth_seq_id 403 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.839 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 183 n n C1 C2 GOL sing 184 n n C1 H11 GOL sing 185 n n C1 H12 GOL sing 186 n n O1 HO1 GOL sing 187 n n C2 O2 GOL sing 188 n n C2 C3 GOL sing 189 n n C2 H2 GOL sing 190 n n O2 HO2 GOL sing 191 n n C3 O3 GOL sing 192 n n C3 H31 GOL sing 193 n n C3 H32 GOL sing 194 n n O3 HO3 GOL sing 195 n n # _atom_sites.entry_id 7K64 _atom_sites.fract_transf_matrix[1][1] 0.010637 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005859 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012086 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 FMN A 1 401 401 FMN FMN . J 3 SIN A 1 402 501 SIN SIN . K 4 PO4 B 1 501 501 PO4 PO4 . L 2 FMN C 1 401 401 FMN FMN . M 3 SIN C 1 402 501 SIN SIN . N 2 FMN D 1 401 401 FMN FMN . O 2 FMN E 1 401 401 FMN FMN . P 3 SIN E 1 402 501 SIN SIN . Q 5 NA E 1 403 502 NA NA . R 6 GOL E 1 404 601 GOL GOL . S 4 PO4 F 1 501 501 PO4 PO4 . T 6 GOL F 1 502 601 GOL GOL . U 2 FMN G 1 401 401 FMN FMN . V 7 CL G 1 402 501 CL CL . W 2 FMN H 1 401 401 FMN FMN . X 8 HOH A 1 501 1 HOH HOH . X 8 HOH A 2 502 5 HOH HOH . X 8 HOH A 3 503 6 HOH HOH . X 8 HOH A 4 504 25 HOH HOH . X 8 HOH A 5 505 24 HOH HOH . X 8 HOH A 6 506 15 HOH HOH . Y 8 HOH B 1 601 3 HOH HOH . Y 8 HOH B 2 602 34 HOH HOH . Y 8 HOH B 3 603 28 HOH HOH . Y 8 HOH B 4 604 26 HOH HOH . Y 8 HOH B 5 605 37 HOH HOH . Y 8 HOH B 6 606 36 HOH HOH . Y 8 HOH B 7 607 13 HOH HOH . Y 8 HOH B 8 608 27 HOH HOH . Z 8 HOH C 1 501 7 HOH HOH . Z 8 HOH C 2 502 12 HOH HOH . Z 8 HOH C 3 503 30 HOH HOH . Z 8 HOH C 4 504 10 HOH HOH . Z 8 HOH C 5 505 35 HOH HOH . Z 8 HOH C 6 506 29 HOH HOH . AA 8 HOH D 1 501 38 HOH HOH . AA 8 HOH D 2 502 9 HOH HOH . AA 8 HOH D 3 503 32 HOH HOH . AA 8 HOH D 4 504 20 HOH HOH . AA 8 HOH D 5 505 16 HOH HOH . AA 8 HOH D 6 506 31 HOH HOH . BA 8 HOH E 1 501 21 HOH HOH . BA 8 HOH E 2 502 17 HOH HOH . BA 8 HOH E 3 503 41 HOH HOH . BA 8 HOH E 4 504 18 HOH HOH . BA 8 HOH E 5 505 4 HOH HOH . BA 8 HOH E 6 506 8 HOH HOH . BA 8 HOH E 7 507 2 HOH HOH . BA 8 HOH E 8 508 22 HOH HOH . CA 8 HOH F 1 601 39 HOH HOH . CA 8 HOH F 2 602 40 HOH HOH . CA 8 HOH F 3 603 14 HOH HOH . DA 8 HOH G 1 501 19 HOH HOH . EA 8 HOH H 1 501 23 HOH HOH . EA 8 HOH H 2 502 33 HOH HOH . EA 8 HOH H 3 503 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . R 6 -13.654 -41.655 -33.328 1 102.13 ? C1 GOL 404 E 1 HETATM 2 O O1 GOL . . . R 6 -14.123 -40.914 -32.24 1 84.38 ? O1 GOL 404 E 1 HETATM 3 C C2 GOL . . . R 6 -14.45 -42.99 -33.355 1 96.42 ? C2 GOL 404 E 1 HETATM 4 O O2 GOL . . . R 6 -14.872 -43.323 -34.638 1 91.71 ? O2 GOL 404 E 1 HETATM 5 C C3 GOL . . . R 6 -13.486 -44.051 -32.764 1 81.27 ? C3 GOL 404 E 1 HETATM 6 O O3 GOL . . . R 6 -14.008 -45.3 -33.104 1 75.71 ? O3 GOL 404 E 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 52 _model_server_stats.query_time_ms 370 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 6 #