data_7K65 # _model_server_result.job_id pd3HvdhjEdKrj5qe6lI1RQ _model_server_result.datetime_utc '2024-11-04 22:42:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k65 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1407}' # _entry.id 7K65 # _exptl.entry_id 7K65 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 1165.315 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7K65 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K65 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 2001 NAG 3 n C NAG 2 C 2 NAG A 2002 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 189 A CYS 189 1_555 A SG CYS 212 A CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 220 A CYS 220 1_555 A SG CYS 313 A CYS 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? disulf ? disulf3 A SG CYS 282 A CYS 282 1_555 A SG CYS 290 A CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 B SG CYS 22 B CYS 22 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 127 A ASN 127 1_555 E C1 NAG . A NAG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 298 A ASN 298 1_555 F C1 NAG . A NAG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale3 A ND2 ASN 335 A ASN 335 1_555 H C1 NAG . A NAG 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale4 A ND2 ASN 400 A ASN 400 1_555 D C1 NAG . A NAG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 A ND2 ASN 837 A ASN 861 1_555 G C1 NAG . A NAG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 A ND2 ASN 962 A ASN 986 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? # _chem_comp.formula 'C56 H92 O25' _chem_comp.formula_weight 1165.315 _chem_comp.id Q7G _chem_comp.mon_nstd_flag . _chem_comp.name '2-{[(4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranosyl)oxy]methyl}-4-{[(3beta,9beta,14beta,17beta,25R)-spirost-5-en-3-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-alpha-D-glucopyranoside' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7K65 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 1401 2003 NAG NAG . E 4 NAG A 1 1402 2004 NAG NAG . F 4 NAG A 1 1403 2005 NAG NAG . G 4 NAG A 1 1404 2006 NAG NAG . H 4 NAG A 1 1405 2007 NAG NAG . I 5 Q7G A 1 1406 2008 Q7G Q7G . J 5 Q7G A 1 1407 2009 Q7G Q7G . K 5 Q7G A 1 1408 2010 Q7G Q7G . L 5 Q7G A 1 1409 2011 Q7G Q7G . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 Q7G . . . J 5 133.372 146.818 150.701 1 136.92 ? C13 Q7G 1407 A 1 HETATM 2 C C15 Q7G . . . J 5 133.669 144.442 151.276 1 136.92 ? C15 Q7G 1407 A 1 HETATM 3 C C16 Q7G . . . J 5 132.777 148.024 151.089 1 136.92 ? C16 Q7G 1407 A 1 HETATM 4 C C17 Q7G . . . J 5 132.34 148.875 149.911 1 136.92 ? C17 Q7G 1407 A 1 HETATM 5 C C01 Q7G . . . J 5 137.45 143.639 149.371 1 136.92 ? C01 Q7G 1407 A 1 HETATM 6 C C03 Q7G . . . J 5 136.208 141.566 148.573 1 136.92 ? C03 Q7G 1407 A 1 HETATM 7 C C04 Q7G . . . J 5 136.228 141.026 150.007 1 136.92 ? C04 Q7G 1407 A 1 HETATM 8 C C06 Q7G . . . J 5 135.06 143.068 149.802 1 136.92 ? C06 Q7G 1407 A 1 HETATM 9 C C07 Q7G . . . J 5 134.803 144.477 150.279 1 136.92 ? C07 Q7G 1407 A 1 HETATM 10 C C08 Q7G . . . J 5 134.379 145.327 149.107 1 136.92 ? C08 Q7G 1407 A 1 HETATM 11 C C10 Q7G . . . J 5 135.721 143.853 147.565 1 136.92 ? C10 Q7G 1407 A 1 HETATM 12 C C18 Q7G . . . J 5 133.491 149.005 148.953 1 136.92 ? C18 Q7G 1407 A 1 HETATM 13 C C19 Q7G . . . J 5 133.786 147.619 148.453 1 136.92 ? C19 Q7G 1407 A 1 HETATM 14 C CG1 Q7G . . . J 5 130.782 150.078 151.203 1 136.92 ? CG1 Q7G 1407 A 1 HETATM 15 C C02 Q7G . . . J 5 136.149 143.061 148.783 1 136.92 ? C02 Q7G 1407 A 1 HETATM 16 C C05 Q7G . . . J 5 135.713 142.194 150.87 1 136.92 ? C05 Q7G 1407 A 1 HETATM 17 C C09 Q7G . . . J 5 135.449 145.288 148.008 1 136.92 ? C09 Q7G 1407 A 1 HETATM 18 C C11 Q7G . . . J 5 134.246 146.747 149.606 1 136.92 ? C11 Q7G 1407 A 1 HETATM 19 C C12 Q7G . . . J 5 135.619 147.217 150.085 1 136.92 ? C12 Q7G 1407 A 1 HETATM 20 C C14 Q7G . . . J 5 133.158 145.713 151.524 1 136.92 ? C14 Q7G 1407 A 1 HETATM 21 C C73 Q7G . . . J 5 137.93 140.062 148.996 1 136.92 ? C73 Q7G 1407 A 1 HETATM 22 C C74 Q7G . . . J 5 137.562 141.173 148.043 1 136.92 ? C74 Q7G 1407 A 1 HETATM 23 C C75 Q7G . . . J 5 137.476 140.655 146.611 1 136.92 ? C75 Q7G 1407 A 1 HETATM 24 C C76 Q7G . . . J 5 139.404 139.706 148.868 1 136.92 ? C76 Q7G 1407 A 1 HETATM 25 C C77 Q7G . . . J 5 139.747 138.638 149.876 1 136.92 ? C77 Q7G 1407 A 1 HETATM 26 C C78 Q7G . . . J 5 138.883 137.43 149.601 1 136.92 ? C78 Q7G 1407 A 1 HETATM 27 C C79 Q7G . . . J 5 137.424 137.825 149.72 1 136.92 ? C79 Q7G 1407 A 1 HETATM 28 C C81 Q7G . . . J 5 139.192 136.349 150.633 1 136.92 ? C81 Q7G 1407 A 1 HETATM 29 O O20 Q7G . . . J 5 131.947 150.177 150.378 1 136.92 ? O20 Q7G 1407 A 1 HETATM 30 O O72 Q7G . . . J 5 137.626 140.705 150.252 1 136.92 ? O72 Q7G 1407 A 1 HETATM 31 O O80 Q7G . . . J 5 137.112 138.885 148.784 1 136.92 ? O80 Q7G 1407 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #