data_7K6A # _model_server_result.job_id yenZGO0gezPjVVNFBNEEpw _model_server_result.datetime_utc '2024-11-24 22:36:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k6a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7K6A # _exptl.entry_id 7K6A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 440.463 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-ethyl-5-[3-({3-[4-(trifluoromethyl)piperidin-1-yl]pyridin-2-yl}oxy)propoxy]pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.8 _cell.angle_gamma 90 _cell.entry_id 7K6A _cell.length_a 28.87 _cell.length_b 66.65 _cell.length_c 44.29 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K6A _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H27 F3 N6 O2' _chem_comp.formula_weight 440.463 _chem_comp.id VYG _chem_comp.mon_nstd_flag . _chem_comp.name 6-ethyl-5-[3-({3-[4-(trifluoromethyl)piperidin-1-yl]pyridin-2-yl}oxy)propoxy]pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C4 VYG sing 465 n n N2 C4 VYG doub 466 n y N2 C3 VYG sing 467 n y C4 C5 VYG sing 468 n y N1 C3 VYG sing 469 n n C3 N VYG doub 470 n y C6 C7 VYG sing 471 n n C6 O VYG sing 472 n n C5 O VYG sing 473 n n C5 C2 VYG doub 474 n y C7 C8 VYG sing 475 n n F1 C17 VYG sing 476 n n N C2 VYG sing 477 n y F C17 VYG sing 478 n n C2 C1 VYG sing 479 n n C17 F2 VYG sing 480 n n C17 C16 VYG sing 481 n n C8 O1 VYG sing 482 n n C18 C16 VYG sing 483 n n C18 C19 VYG sing 484 n n C1 C VYG sing 485 n n O1 C9 VYG sing 486 n n C16 C15 VYG sing 487 n n C19 N5 VYG sing 488 n n C15 C14 VYG sing 489 n n N5 C14 VYG sing 490 n n N5 C13 VYG sing 491 n n C9 C13 VYG doub 492 n y C9 N4 VYG sing 493 n y C13 C12 VYG sing 494 n y N4 C10 VYG doub 495 n y C12 C11 VYG doub 496 n y C10 C11 VYG sing 497 n y C1 H1 VYG sing 498 n n C1 H2 VYG sing 499 n n C6 H3 VYG sing 500 n n C6 H4 VYG sing 501 n n C7 H5 VYG sing 502 n n C7 H6 VYG sing 503 n n N1 H7 VYG sing 504 n n N1 H8 VYG sing 505 n n C8 H9 VYG sing 506 n n C8 H10 VYG sing 507 n n C10 H11 VYG sing 508 n n C11 H12 VYG sing 509 n n C12 H13 VYG sing 510 n n C14 H14 VYG sing 511 n n C14 H15 VYG sing 512 n n C15 H16 VYG sing 513 n n C15 H17 VYG sing 514 n n C16 H18 VYG sing 515 n n C18 H19 VYG sing 516 n n C18 H20 VYG sing 517 n n C19 H21 VYG sing 518 n n C19 H22 VYG sing 519 n n N3 H23 VYG sing 520 n n N3 H24 VYG sing 521 n n C H25 VYG sing 522 n n C H26 VYG sing 523 n n C H27 VYG sing 524 n n # _atom_sites.entry_id 7K6A _atom_sites.fract_transf_matrix[1][1] 0.034638 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001089 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015004 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02259 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 201 200 NAP NAP . C 3 VYG A 1 202 201 VYG 575 . D 4 CL A 1 203 202 CL CL . E 5 EDO A 1 204 301 EDO EDO . F 5 EDO A 1 205 302 EDO EDO . G 5 EDO A 1 206 303 EDO EDO . H 6 HOH A 1 301 72 HOH HOH . H 6 HOH A 2 302 90 HOH HOH . H 6 HOH A 3 303 198 HOH HOH . H 6 HOH A 4 304 272 HOH HOH . H 6 HOH A 5 305 66 HOH HOH . H 6 HOH A 6 306 79 HOH HOH . H 6 HOH A 7 307 144 HOH HOH . H 6 HOH A 8 308 201 HOH HOH . H 6 HOH A 9 309 216 HOH HOH . H 6 HOH A 10 310 157 HOH HOH . H 6 HOH A 11 311 19 HOH HOH . H 6 HOH A 12 312 115 HOH HOH . H 6 HOH A 13 313 256 HOH HOH . H 6 HOH A 14 314 191 HOH HOH . H 6 HOH A 15 315 105 HOH HOH . H 6 HOH A 16 316 263 HOH HOH . H 6 HOH A 17 317 51 HOH HOH . H 6 HOH A 18 318 68 HOH HOH . H 6 HOH A 19 319 149 HOH HOH . H 6 HOH A 20 320 38 HOH HOH . H 6 HOH A 21 321 65 HOH HOH . H 6 HOH A 22 322 60 HOH HOH . H 6 HOH A 23 323 267 HOH HOH . H 6 HOH A 24 324 253 HOH HOH . H 6 HOH A 25 325 269 HOH HOH . H 6 HOH A 26 326 225 HOH HOH . H 6 HOH A 27 327 78 HOH HOH . H 6 HOH A 28 328 24 HOH HOH . H 6 HOH A 29 329 102 HOH HOH . H 6 HOH A 30 330 40 HOH HOH . H 6 HOH A 31 331 46 HOH HOH . H 6 HOH A 32 332 180 HOH HOH . H 6 HOH A 33 333 32 HOH HOH . H 6 HOH A 34 334 223 HOH HOH . H 6 HOH A 35 335 13 HOH HOH . H 6 HOH A 36 336 251 HOH HOH . H 6 HOH A 37 337 89 HOH HOH . H 6 HOH A 38 338 174 HOH HOH . H 6 HOH A 39 339 106 HOH HOH . H 6 HOH A 40 340 37 HOH HOH . H 6 HOH A 41 341 49 HOH HOH . H 6 HOH A 42 342 138 HOH HOH . H 6 HOH A 43 343 33 HOH HOH . H 6 HOH A 44 344 233 HOH HOH . H 6 HOH A 45 345 43 HOH HOH . H 6 HOH A 46 346 25 HOH HOH . H 6 HOH A 47 347 22 HOH HOH . H 6 HOH A 48 348 95 HOH HOH . H 6 HOH A 49 349 254 HOH HOH . H 6 HOH A 50 350 74 HOH HOH . H 6 HOH A 51 351 160 HOH HOH . H 6 HOH A 52 352 12 HOH HOH . H 6 HOH A 53 353 235 HOH HOH . H 6 HOH A 54 354 16 HOH HOH . H 6 HOH A 55 355 127 HOH HOH . H 6 HOH A 56 356 215 HOH HOH . H 6 HOH A 57 357 108 HOH HOH . H 6 HOH A 58 358 29 HOH HOH . H 6 HOH A 59 359 94 HOH HOH . H 6 HOH A 60 360 55 HOH HOH . H 6 HOH A 61 361 39 HOH HOH . H 6 HOH A 62 362 134 HOH HOH . H 6 HOH A 63 363 9 HOH HOH . H 6 HOH A 64 364 59 HOH HOH . H 6 HOH A 65 365 8 HOH HOH . H 6 HOH A 66 366 162 HOH HOH . H 6 HOH A 67 367 31 HOH HOH . H 6 HOH A 68 368 121 HOH HOH . H 6 HOH A 69 369 208 HOH HOH . H 6 HOH A 70 370 264 HOH HOH . H 6 HOH A 71 371 244 HOH HOH . H 6 HOH A 72 372 10 HOH HOH . H 6 HOH A 73 373 67 HOH HOH . H 6 HOH A 74 374 129 HOH HOH . H 6 HOH A 75 375 93 HOH HOH . H 6 HOH A 76 376 154 HOH HOH . H 6 HOH A 77 377 273 HOH HOH . H 6 HOH A 78 378 229 HOH HOH . H 6 HOH A 79 379 41 HOH HOH . H 6 HOH A 80 380 57 HOH HOH . H 6 HOH A 81 381 133 HOH HOH . H 6 HOH A 82 382 150 HOH HOH . H 6 HOH A 83 383 30 HOH HOH . H 6 HOH A 84 384 63 HOH HOH . H 6 HOH A 85 385 239 HOH HOH . H 6 HOH A 86 386 69 HOH HOH . H 6 HOH A 87 387 28 HOH HOH . H 6 HOH A 88 388 21 HOH HOH . H 6 HOH A 89 389 18 HOH HOH . H 6 HOH A 90 390 73 HOH HOH . H 6 HOH A 91 391 147 HOH HOH . H 6 HOH A 92 392 45 HOH HOH . H 6 HOH A 93 393 250 HOH HOH . H 6 HOH A 94 394 111 HOH HOH . H 6 HOH A 95 395 34 HOH HOH . H 6 HOH A 96 396 214 HOH HOH . H 6 HOH A 97 397 70 HOH HOH . H 6 HOH A 98 398 99 HOH HOH . H 6 HOH A 99 399 54 HOH HOH . H 6 HOH A 100 400 189 HOH HOH . H 6 HOH A 101 401 6 HOH HOH . H 6 HOH A 102 402 47 HOH HOH . H 6 HOH A 103 403 20 HOH HOH . H 6 HOH A 104 404 53 HOH HOH . H 6 HOH A 105 405 11 HOH HOH . H 6 HOH A 106 406 252 HOH HOH . H 6 HOH A 107 407 203 HOH HOH . H 6 HOH A 108 408 50 HOH HOH . H 6 HOH A 109 409 173 HOH HOH . H 6 HOH A 110 410 17 HOH HOH . H 6 HOH A 111 411 188 HOH HOH . H 6 HOH A 112 412 107 HOH HOH . H 6 HOH A 113 413 27 HOH HOH . H 6 HOH A 114 414 228 HOH HOH . H 6 HOH A 115 415 56 HOH HOH . H 6 HOH A 116 416 109 HOH HOH . H 6 HOH A 117 417 91 HOH HOH . H 6 HOH A 118 418 92 HOH HOH . H 6 HOH A 119 419 103 HOH HOH . H 6 HOH A 120 420 36 HOH HOH . H 6 HOH A 121 421 75 HOH HOH . H 6 HOH A 122 422 153 HOH HOH . H 6 HOH A 123 423 193 HOH HOH . H 6 HOH A 124 424 96 HOH HOH . H 6 HOH A 125 425 71 HOH HOH . H 6 HOH A 126 426 232 HOH HOH . H 6 HOH A 127 427 42 HOH HOH . H 6 HOH A 128 428 98 HOH HOH . H 6 HOH A 129 429 112 HOH HOH . H 6 HOH A 130 430 275 HOH HOH . H 6 HOH A 131 431 197 HOH HOH . H 6 HOH A 132 432 83 HOH HOH . H 6 HOH A 133 433 61 HOH HOH . H 6 HOH A 134 434 158 HOH HOH . H 6 HOH A 135 435 227 HOH HOH . H 6 HOH A 136 436 48 HOH HOH . H 6 HOH A 137 437 186 HOH HOH . H 6 HOH A 138 438 132 HOH HOH . H 6 HOH A 139 439 114 HOH HOH . H 6 HOH A 140 440 100 HOH HOH . H 6 HOH A 141 441 159 HOH HOH . H 6 HOH A 142 442 84 HOH HOH . H 6 HOH A 143 443 169 HOH HOH . H 6 HOH A 144 444 226 HOH HOH . H 6 HOH A 145 445 97 HOH HOH . H 6 HOH A 146 446 224 HOH HOH . H 6 HOH A 147 447 110 HOH HOH . H 6 HOH A 148 448 271 HOH HOH . H 6 HOH A 149 449 113 HOH HOH . H 6 HOH A 150 450 176 HOH HOH . H 6 HOH A 151 451 240 HOH HOH . H 6 HOH A 152 452 143 HOH HOH . H 6 HOH A 153 453 164 HOH HOH . H 6 HOH A 154 454 248 HOH HOH . H 6 HOH A 155 455 172 HOH HOH . H 6 HOH A 156 456 205 HOH HOH . H 6 HOH A 157 457 218 HOH HOH . H 6 HOH A 158 458 270 HOH HOH . H 6 HOH A 159 459 204 HOH HOH . H 6 HOH A 160 460 236 HOH HOH . H 6 HOH A 161 461 199 HOH HOH . H 6 HOH A 162 462 234 HOH HOH . H 6 HOH A 163 463 123 HOH HOH . H 6 HOH A 164 464 238 HOH HOH . H 6 HOH A 165 465 262 HOH HOH . H 6 HOH A 166 466 128 HOH HOH . H 6 HOH A 167 467 217 HOH HOH . H 6 HOH A 168 468 259 HOH HOH . H 6 HOH A 169 469 116 HOH HOH . H 6 HOH A 170 470 207 HOH HOH . H 6 HOH A 171 471 139 HOH HOH . H 6 HOH A 172 472 156 HOH HOH . H 6 HOH A 173 473 185 HOH HOH . H 6 HOH A 174 474 242 HOH HOH . H 6 HOH A 175 475 213 HOH HOH . H 6 HOH A 176 476 183 HOH HOH . H 6 HOH A 177 477 245 HOH HOH . H 6 HOH A 178 478 274 HOH HOH . H 6 HOH A 179 479 76 HOH HOH . H 6 HOH A 180 480 168 HOH HOH . H 6 HOH A 181 481 155 HOH HOH . H 6 HOH A 182 482 171 HOH HOH . H 6 HOH A 183 483 222 HOH HOH . H 6 HOH A 184 484 44 HOH HOH . H 6 HOH A 185 485 219 HOH HOH . H 6 HOH A 186 486 243 HOH HOH . H 6 HOH A 187 487 220 HOH HOH . H 6 HOH A 188 488 148 HOH HOH . H 6 HOH A 189 489 202 HOH HOH . H 6 HOH A 190 490 187 HOH HOH . H 6 HOH A 191 491 231 HOH HOH . H 6 HOH A 192 492 131 HOH HOH . H 6 HOH A 193 493 255 HOH HOH . H 6 HOH A 194 494 257 HOH HOH . H 6 HOH A 195 495 124 HOH HOH . H 6 HOH A 196 496 80 HOH HOH . H 6 HOH A 197 497 118 HOH HOH . H 6 HOH A 198 498 258 HOH HOH . H 6 HOH A 199 499 261 HOH HOH . H 6 HOH A 200 500 276 HOH HOH . H 6 HOH A 201 501 260 HOH HOH . H 6 HOH A 202 502 177 HOH HOH . H 6 HOH A 203 503 182 HOH HOH . H 6 HOH A 204 504 161 HOH HOH . H 6 HOH A 205 505 237 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 VYG . . . C 3 -1.466 -0.738 16.253 1 6.57 ? C1 VYG 202 A 1 HETATM 2 C C2 VYG . . . C 3 -1.119 -0.33 14.834 1 7.57 ? C2 VYG 202 A 1 HETATM 3 C C3 VYG . . . C 3 -1.076 1.313 13.216 1 7.05 ? C3 VYG 202 A 1 HETATM 4 C C4 VYG . . . C 3 -0.255 -0.708 12.644 1 6.61 ? C4 VYG 202 A 1 HETATM 5 C C5 VYG . . . C 3 -0.558 -1.189 13.937 1 6.84 ? C5 VYG 202 A 1 HETATM 6 C C6 VYG . . . C 3 -1.238 -3.509 13.882 1 7.43 ? C6 VYG 202 A 1 HETATM 7 C C7 VYG . . . C 3 -0.561 -4.84 14.236 1 6.7 ? C7 VYG 202 A 1 HETATM 8 N N1 VYG . . . C 3 -1.346 2.595 12.866 1 7.65 ? N1 VYG 202 A 1 HETATM 9 C C8 VYG . . . C 3 -0.287 -4.917 15.743 1 6.17 ? C8 VYG 202 A 1 HETATM 10 C C9 VYG . . . C 3 -1.582 -4.571 17.778 1 7.57 ? C9 VYG 202 A 1 HETATM 11 C C10 VYG . . . C 3 -0.482 -4.401 19.774 1 15.76 ? C10 VYG 202 A 1 HETATM 12 C C11 VYG . . . C 3 -1.653 -4.147 20.443 1 16.13 ? C11 VYG 202 A 1 HETATM 13 N N2 VYG . . . C 3 -0.517 0.542 12.282 1 5.06 ? N2 VYG 202 A 1 HETATM 14 C C12 VYG . . . C 3 -2.848 -4.095 19.721 1 11.57 ? C12 VYG 202 A 1 HETATM 15 C C13 VYG . . . C 3 -2.85 -4.297 18.349 1 8.73 ? C13 VYG 202 A 1 HETATM 16 C C14 VYG . . . C 3 -5.194 -3.644 18.139 1 10.73 ? C14 VYG 202 A 1 HETATM 17 C C15 VYG . . . C 3 -6.288 -3.482 17.07 1 10.17 ? C15 VYG 202 A 1 HETATM 18 C C16 VYG . . . C 3 -6.641 -4.842 16.433 1 8.05 ? C16 VYG 202 A 1 HETATM 19 C C17 VYG . . . C 3 -7.716 -4.732 15.401 1 12.4 ? C17 VYG 202 A 1 HETATM 20 C C18 VYG . . . C 3 -5.378 -5.404 15.771 1 8.42 ? C18 VYG 202 A 1 HETATM 21 C C19 VYG . . . C 3 -4.346 -5.571 16.898 1 7.94 ? C19 VYG 202 A 1 HETATM 22 O O1 VYG . . . C 3 -1.553 -4.771 16.424 1 6.14 ? O1 VYG 202 A 1 HETATM 23 N N3 VYG . . . C 3 0.3 -1.53 11.726 1 6.17 ? N3 VYG 202 A 1 HETATM 24 N N VYG . . . C 3 -1.362 0.936 14.461 1 7.03 ? N VYG 202 A 1 HETATM 25 C C VYG . . . C 3 -3.002 -0.816 16.408 1 10.04 ? C VYG 202 A 1 HETATM 26 O O VYG . . . C 3 -0.232 -2.508 14.244 1 7.57 ? O VYG 202 A 1 HETATM 27 F F VYG . . . C 3 -8.009 -5.921 14.826 1 12.35 ? F VYG 202 A 1 HETATM 28 F F1 VYG . . . C 3 -7.394 -3.882 14.401 1 12.16 ? F1 VYG 202 A 1 HETATM 29 F F2 VYG . . . C 3 -8.846 -4.251 15.949 1 13.29 ? F2 VYG 202 A 1 HETATM 30 N N4 VYG . . . C 3 -0.47 -4.63 18.444 1 9.44 ? N4 VYG 202 A 1 HETATM 31 N N5 VYG . . . C 3 -4.008 -4.286 17.561 1 8.58 ? N5 VYG 202 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #