data_7K6D # _model_server_result.job_id VVQCk6uJwVMrLor5u2HRUQ _model_server_result.datetime_utc '2024-11-08 15:32:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k6d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7K6D # _exptl.entry_id 7K6D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.233 _cell.angle_gamma 90 _cell.entry_id 7K6D _cell.length_a 109.76 _cell.length_b 54.82 _cell.length_c 48.24 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K6D _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id CAI _struct_conn.ptnr2_label_comp_id SV6 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SV6 _struct_conn.ptnr2_auth_seq_id 402 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.779 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7K6D _atom_sites.fract_transf_matrix[1][1] 0.009111 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001809 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018242 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021135 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 404 DMS DMS . C 3 SV6 A 1 402 501 SV6 TXP . D 4 HOH A 1 501 37 HOH HOH . D 4 HOH A 2 502 30 HOH HOH . D 4 HOH A 3 503 60 HOH HOH . D 4 HOH A 4 504 13 HOH HOH . D 4 HOH A 5 505 55 HOH HOH . D 4 HOH A 6 506 11 HOH HOH . D 4 HOH A 7 507 24 HOH HOH . D 4 HOH A 8 508 21 HOH HOH . D 4 HOH A 9 509 2 HOH HOH . D 4 HOH A 10 510 26 HOH HOH . D 4 HOH A 11 511 7 HOH HOH . D 4 HOH A 12 512 5 HOH HOH . D 4 HOH A 13 513 32 HOH HOH . D 4 HOH A 14 514 58 HOH HOH . D 4 HOH A 15 515 18 HOH HOH . D 4 HOH A 16 516 15 HOH HOH . D 4 HOH A 17 517 22 HOH HOH . D 4 HOH A 18 518 50 HOH HOH . D 4 HOH A 19 519 4 HOH HOH . D 4 HOH A 20 520 10 HOH HOH . D 4 HOH A 21 521 56 HOH HOH . D 4 HOH A 22 522 9 HOH HOH . D 4 HOH A 23 523 28 HOH HOH . D 4 HOH A 24 524 52 HOH HOH . D 4 HOH A 25 525 36 HOH HOH . D 4 HOH A 26 526 33 HOH HOH . D 4 HOH A 27 527 16 HOH HOH . D 4 HOH A 28 528 40 HOH HOH . D 4 HOH A 29 529 23 HOH HOH . D 4 HOH A 30 530 1 HOH HOH . D 4 HOH A 31 531 25 HOH HOH . D 4 HOH A 32 532 12 HOH HOH . D 4 HOH A 33 533 44 HOH HOH . D 4 HOH A 34 534 14 HOH HOH . D 4 HOH A 35 535 20 HOH HOH . D 4 HOH A 36 536 19 HOH HOH . D 4 HOH A 37 537 57 HOH HOH . D 4 HOH A 38 538 3 HOH HOH . D 4 HOH A 39 539 6 HOH HOH . D 4 HOH A 40 540 45 HOH HOH . D 4 HOH A 41 541 34 HOH HOH . D 4 HOH A 42 542 39 HOH HOH . D 4 HOH A 43 543 35 HOH HOH . D 4 HOH A 44 544 38 HOH HOH . D 4 HOH A 45 545 29 HOH HOH . D 4 HOH A 46 546 42 HOH HOH . D 4 HOH A 47 547 31 HOH HOH . D 4 HOH A 48 548 41 HOH HOH . D 4 HOH A 49 549 17 HOH HOH . D 4 HOH A 50 550 27 HOH HOH . D 4 HOH A 51 551 8 HOH HOH . D 4 HOH A 52 552 51 HOH HOH . D 4 HOH A 53 553 59 HOH HOH . D 4 HOH A 54 554 54 HOH HOH . D 4 HOH A 55 555 47 HOH HOH . D 4 HOH A 56 556 53 HOH HOH . D 4 HOH A 57 557 48 HOH HOH . D 4 HOH A 58 558 49 HOH HOH . D 4 HOH A 59 559 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . B 2 6.95 -1.456 -6.065 1 61.88 ? S DMS 401 A 1 HETATM 2 O O DMS . . . B 2 6.191 -0.303 -6.628 1 67.07 ? O DMS 401 A 1 HETATM 3 C C1 DMS . . . B 2 5.827 -2.865 -5.841 1 62.05 ? C1 DMS 401 A 1 HETATM 4 C C2 DMS . . . B 2 7.449 -1.125 -4.347 1 55.37 ? C2 DMS 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #