data_7K6D # _model_server_result.job_id M5s1fUHp36-4grv21maiVg _model_server_result.datetime_utc '2024-11-08 16:01:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k6d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7K6D # _exptl.entry_id 7K6D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 681.865 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S,3aR,6aS)-2-[(2S)-2-({(2S)-2-cyclohexyl-2-[(pyrazin-2-ylcarbonyl)amino]acetyl}amino)-3,3-dimethylbutanoyl]-N-[(2R,3S)-1-(cyclopropylamino)-2-hydroxy-1-oxohexan-3-yl]octahydrocyclopenta[c]pyrrole-1-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.233 _cell.angle_gamma 90 _cell.entry_id 7K6D _cell.length_a 109.76 _cell.length_b 54.82 _cell.length_c 48.24 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K6D _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id CAI _struct_conn.ptnr2_label_comp_id SV6 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SV6 _struct_conn.ptnr2_auth_seq_id 402 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.779 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C36 H55 N7 O6' _chem_comp.formula_weight 681.865 _chem_comp.id SV6 _chem_comp.mon_nstd_flag . _chem_comp.name (1S,3aR,6aS)-2-[(2S)-2-({(2S)-2-cyclohexyl-2-[(pyrazin-2-ylcarbonyl)amino]acetyl}amino)-3,3-dimethylbutanoyl]-N-[(2R,3S)-1-(cyclopropylamino)-2-hydroxy-1-oxohexan-3-yl]octahydrocyclopenta[c]pyrrole-1-carboxamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms 'TELAPREVIR, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C SV6 doub 299 n n C CA SV6 sing 300 n n C NAE SV6 sing 301 n n CD1 N SV6 sing 302 n n N CAV SV6 sing 303 n n N CA SV6 sing 304 n n CB CA SV6 sing 305 n n CA HA SV6 sing 306 n n CG CB SV6 sing 307 n n CB CBE SV6 sing 308 n n CB HB SV6 sing 309 n n CD1 CG SV6 sing 310 n n CG CD2 SV6 sing 311 n n CG HG SV6 sing 312 n n CAN NAA SV6 sing 313 n n NAA CAM SV6 sing 314 n n NAA HNAA SV6 sing 315 n n CAW NAC SV6 sing 316 n n CAX NAC SV6 sing 317 n n NAC HNAC SV6 sing 318 n n CBB NAD SV6 sing 319 n n NAD CAY SV6 sing 320 n n NAD HNAD SV6 sing 321 n n CAH NAE SV6 sing 322 n n NAE HNAE SV6 sing 323 n n CBO NAF SV6 doub 324 n y NAF CBN SV6 sing 325 n y CBP NAG SV6 doub 326 n y NAG CBQ SV6 sing 327 n y CAH CAI SV6 sing 328 n n CAH CAJ SV6 sing 329 n n CAH HAH SV6 sing 330 n n CAM CAI SV6 sing 331 n n OBR CAI SV6 sing 332 n n CAI HAI SV6 sing 333 n n CAK CAJ SV6 sing 334 n n CAJ HAJ SV6 sing 335 n n CAJ HAJA SV6 sing 336 n n CAK CAL SV6 sing 337 n n CAK HAK SV6 sing 338 n n CAK HAKA SV6 sing 339 n n CAL HAL SV6 sing 340 n n CAL HALA SV6 sing 341 n n CAL HALB SV6 sing 342 n n CAM OBS SV6 doub 343 n n CAP CAN SV6 sing 344 n n CAO CAN SV6 sing 345 n n CAN HAN SV6 sing 346 n n CAP CAO SV6 sing 347 n n CAO HAO SV6 sing 348 n n CAO HAOA SV6 sing 349 n n CAP HAP SV6 sing 350 n n CAP HAPA SV6 sing 351 n n CAW CAV SV6 sing 352 n n CAV OBT SV6 doub 353 n n CAZ CAW SV6 sing 354 n n CAW HAW SV6 sing 355 n n OBU CAX SV6 doub 356 n n CAX CAY SV6 sing 357 n n CAY CBH SV6 sing 358 n n CAY HAY SV6 sing 359 n n CBA CAZ SV6 sing 360 n n CBD CAZ SV6 sing 361 n n CAZ CBC SV6 sing 362 n n CBA HBA SV6 sing 363 n n CBA HBAA SV6 sing 364 n n CBA HBAB SV6 sing 365 n n CBN CBB SV6 sing 366 n n CBB OBW SV6 doub 367 n n CBC HBC SV6 sing 368 n n CBC HBCA SV6 sing 369 n n CBC HBCB SV6 sing 370 n n CBD HBD SV6 sing 371 n n CBD HBDA SV6 sing 372 n n CBD HBDB SV6 sing 373 n n CBF CBE SV6 sing 374 n n CBE HBE SV6 sing 375 n n CBE HBEA SV6 sing 376 n n CD2 CBF SV6 sing 377 n n CBF HBF SV6 sing 378 n n CBF HBFA SV6 sing 379 n n CBH CBM SV6 sing 380 n n CBH CBI SV6 sing 381 n n CBH HBH SV6 sing 382 n n CBI CBJ SV6 sing 383 n n CBI HBI SV6 sing 384 n n CBI HBIA SV6 sing 385 n n CBJ CBK SV6 sing 386 n n CBJ HBJ SV6 sing 387 n n CBJ HBJA SV6 sing 388 n n CBL CBK SV6 sing 389 n n CBK HBK SV6 sing 390 n n CBK HBKA SV6 sing 391 n n CBM CBL SV6 sing 392 n n CBL HBL SV6 sing 393 n n CBL HBLA SV6 sing 394 n n CBM HBM SV6 sing 395 n n CBM HBMA SV6 sing 396 n n CBQ CBN SV6 doub 397 n y CBP CBO SV6 sing 398 n y CBO HBO SV6 sing 399 n n CBP HBP SV6 sing 400 n n CBQ HBQ SV6 sing 401 n n OBR HOBR SV6 sing 402 n n CD1 HD1 SV6 sing 403 n n CD1 HD1A SV6 sing 404 n n CD2 HD2 SV6 sing 405 n n CD2 HD2A SV6 sing 406 n n # _atom_sites.entry_id 7K6D _atom_sites.fract_transf_matrix[1][1] 0.009111 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001809 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018242 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021135 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 404 DMS DMS . C 3 SV6 A 1 402 501 SV6 TXP . D 4 HOH A 1 501 37 HOH HOH . D 4 HOH A 2 502 30 HOH HOH . D 4 HOH A 3 503 60 HOH HOH . D 4 HOH A 4 504 13 HOH HOH . D 4 HOH A 5 505 55 HOH HOH . D 4 HOH A 6 506 11 HOH HOH . D 4 HOH A 7 507 24 HOH HOH . D 4 HOH A 8 508 21 HOH HOH . D 4 HOH A 9 509 2 HOH HOH . D 4 HOH A 10 510 26 HOH HOH . D 4 HOH A 11 511 7 HOH HOH . D 4 HOH A 12 512 5 HOH HOH . D 4 HOH A 13 513 32 HOH HOH . D 4 HOH A 14 514 58 HOH HOH . D 4 HOH A 15 515 18 HOH HOH . D 4 HOH A 16 516 15 HOH HOH . D 4 HOH A 17 517 22 HOH HOH . D 4 HOH A 18 518 50 HOH HOH . D 4 HOH A 19 519 4 HOH HOH . D 4 HOH A 20 520 10 HOH HOH . D 4 HOH A 21 521 56 HOH HOH . D 4 HOH A 22 522 9 HOH HOH . D 4 HOH A 23 523 28 HOH HOH . D 4 HOH A 24 524 52 HOH HOH . D 4 HOH A 25 525 36 HOH HOH . D 4 HOH A 26 526 33 HOH HOH . D 4 HOH A 27 527 16 HOH HOH . D 4 HOH A 28 528 40 HOH HOH . D 4 HOH A 29 529 23 HOH HOH . D 4 HOH A 30 530 1 HOH HOH . D 4 HOH A 31 531 25 HOH HOH . D 4 HOH A 32 532 12 HOH HOH . D 4 HOH A 33 533 44 HOH HOH . D 4 HOH A 34 534 14 HOH HOH . D 4 HOH A 35 535 20 HOH HOH . D 4 HOH A 36 536 19 HOH HOH . D 4 HOH A 37 537 57 HOH HOH . D 4 HOH A 38 538 3 HOH HOH . D 4 HOH A 39 539 6 HOH HOH . D 4 HOH A 40 540 45 HOH HOH . D 4 HOH A 41 541 34 HOH HOH . D 4 HOH A 42 542 39 HOH HOH . D 4 HOH A 43 543 35 HOH HOH . D 4 HOH A 44 544 38 HOH HOH . D 4 HOH A 45 545 29 HOH HOH . D 4 HOH A 46 546 42 HOH HOH . D 4 HOH A 47 547 31 HOH HOH . D 4 HOH A 48 548 41 HOH HOH . D 4 HOH A 49 549 17 HOH HOH . D 4 HOH A 50 550 27 HOH HOH . D 4 HOH A 51 551 8 HOH HOH . D 4 HOH A 52 552 51 HOH HOH . D 4 HOH A 53 553 59 HOH HOH . D 4 HOH A 54 554 54 HOH HOH . D 4 HOH A 55 555 47 HOH HOH . D 4 HOH A 56 556 53 HOH HOH . D 4 HOH A 57 557 48 HOH HOH . D 4 HOH A 58 558 49 HOH HOH . D 4 HOH A 59 559 46 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBN SV6 . . . C 3 11.932 8.39 26.525 1 31.31 ? CBN SV6 402 A 1 HETATM 2 C CBO SV6 . . . C 3 12.566 7.928 28.708 1 30.08 ? CBO SV6 402 A 1 HETATM 3 C CBP SV6 . . . C 3 12.584 9.308 28.993 1 32.59 ? CBP SV6 402 A 1 HETATM 4 C CBB SV6 . . . C 3 11.522 7.883 25.175 1 32.58 ? CBB SV6 402 A 1 HETATM 5 C CBQ SV6 . . . C 3 11.925 9.774 26.815 1 34.24 ? CBQ SV6 402 A 1 HETATM 6 O OBW SV6 . . . C 3 11.315 8.649 24.239 1 31.41 ? OBW SV6 402 A 1 HETATM 7 N NAF SV6 . . . C 3 12.222 7.467 27.479 1 30.41 ? NAF SV6 402 A 1 HETATM 8 N NAG SV6 . . . C 3 12.265 10.221 28.048 1 33.44 ? NAG SV6 402 A 1 HETATM 9 N NAD SV6 . . . C 3 11.332 6.531 25.055 1 29.66 ? NAD SV6 402 A 1 HETATM 10 C CAY SV6 . . . C 3 10.852 5.93 23.813 1 28.01 ? CAY SV6 402 A 1 HETATM 11 C CAX SV6 . . . C 3 9.996 4.763 24.352 1 25.95 ? CAX SV6 402 A 1 HETATM 12 O OBU SV6 . . . C 3 10.154 4.308 25.516 1 26.34 ? OBU SV6 402 A 1 HETATM 13 C CBH SV6 . . . C 3 11.965 5.31 22.917 1 30.69 ? CBH SV6 402 A 1 HETATM 14 C CBI SV6 . . . C 3 12.86 4.3 23.656 1 27.35 ? CBI SV6 402 A 1 HETATM 15 C CBJ SV6 . . . C 3 13.981 3.769 22.771 1 26.79 ? CBJ SV6 402 A 1 HETATM 16 C CBK SV6 . . . C 3 14.785 4.894 22.115 1 28.15 ? CBK SV6 402 A 1 HETATM 17 C CBL SV6 . . . C 3 13.861 5.801 21.322 1 26.65 ? CBL SV6 402 A 1 HETATM 18 C CBM SV6 . . . C 3 12.82 6.396 22.253 1 28.44 ? CBM SV6 402 A 1 HETATM 19 N NAC SV6 . . . C 3 9.063 4.214 23.502 1 25.16 ? NAC SV6 402 A 1 HETATM 20 C CAW SV6 . . . C 3 8.302 3.086 23.968 1 25.68 ? CAW SV6 402 A 1 HETATM 21 C CAZ SV6 . . . C 3 6.751 3.378 23.902 1 27.92 ? CAZ SV6 402 A 1 HETATM 22 C CBC SV6 . . . C 3 5.983 2.157 24.406 1 28.58 ? CBC SV6 402 A 1 HETATM 23 C CBD SV6 . . . C 3 6.458 4.514 24.905 1 27.62 ? CBD SV6 402 A 1 HETATM 24 C CBA SV6 . . . C 3 6.244 3.753 22.502 1 28.1 ? CBA SV6 402 A 1 HETATM 25 C CAV SV6 . . . C 3 8.691 1.816 23.145 1 26.37 ? CAV SV6 402 A 1 HETATM 26 O OBT SV6 . . . C 3 8.53 1.781 21.934 1 25.37 ? OBT SV6 402 A 1 HETATM 27 C C SV6 . . . C 3 8.321 -1.332 22.991 1 31.35 ? C SV6 402 A 1 HETATM 28 N N SV6 . . . C 3 9.266 0.705 23.749 1 26.53 ? N SV6 402 A 1 HETATM 29 O O SV6 . . . C 3 7.656 -1.567 24.003 1 35.04 ? O SV6 402 A 1 HETATM 30 C CA SV6 . . . C 3 9.633 -0.534 23.056 1 29.22 ? CA SV6 402 A 1 HETATM 31 C CB SV6 . . . C 3 10.639 -1.253 23.972 1 29.03 ? CB SV6 402 A 1 HETATM 32 C CG SV6 . . . C 3 10.739 -0.36 25.234 1 29.95 ? CG SV6 402 A 1 HETATM 33 C CBE SV6 . . . C 3 12.042 -1.276 23.34 1 28.07 ? CBE SV6 402 A 1 HETATM 34 C CBF SV6 . . . C 3 12.7 0.035 23.772 1 31.13 ? CBF SV6 402 A 1 HETATM 35 C CD1 SV6 . . . C 3 9.542 0.578 25.183 1 28.11 ? CD1 SV6 402 A 1 HETATM 36 C CD2 SV6 . . . C 3 12.091 0.367 25.137 1 30.79 ? CD2 SV6 402 A 1 HETATM 37 N NAA SV6 . . . C 3 5.111 -5.312 22.29 1 31.23 ? NAA SV6 402 A 1 HETATM 38 N NAE SV6 . . . C 3 7.823 -1.712 21.762 1 28.83 ? NAE SV6 402 A 1 HETATM 39 C CAH SV6 . . . C 3 6.537 -2.415 21.762 1 29.76 ? CAH SV6 402 A 1 HETATM 40 C CAI SV6 . . . C 3 6.7 -3.81 21.11 1 29.14 ? CAI SV6 402 A 1 HETATM 41 C CAJ SV6 . . . C 3 5.415 -1.644 21.035 1 33.71 ? CAJ SV6 402 A 1 HETATM 42 C CAK SV6 . . . C 3 5.513 -0.127 21.119 1 38.71 ? CAK SV6 402 A 1 HETATM 43 C CAL SV6 . . . C 3 5.3 0.468 19.734 1 43.61 ? CAL SV6 402 A 1 HETATM 44 C CAM SV6 . . . C 3 5.372 -4.594 21.134 1 30.63 ? CAM SV6 402 A 1 HETATM 45 C CAN SV6 . . . C 3 3.933 -6.082 22.528 1 35 ? CAN SV6 402 A 1 HETATM 46 C CAO SV6 . . . C 3 3.52 -6.347 23.97 1 34.7 ? CAO SV6 402 A 1 HETATM 47 C CAP SV6 . . . C 3 2.708 -5.395 23.122 1 36.27 ? CAP SV6 402 A 1 HETATM 48 O OBR SV6 . . . C 3 7.604 -4.528 21.862 1 27.88 ? OBR SV6 402 A 1 HETATM 49 O OBS SV6 . . . C 3 4.574 -4.518 20.194 1 27.86 ? OBS SV6 402 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 226 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 49 #