data_7K6H # _model_server_result.job_id p2MYFLKallYsYiPg9roaBA _model_server_result.datetime_utc '2024-10-19 03:39:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k6h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7K6H # _exptl.entry_id 7K6H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 474.555 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-{[2-ethoxy-4-(4-hydroxypiperidin-1-yl)phenyl]amino}-5,11-dimethyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7K6H _cell.length_a 41.82 _cell.length_b 52.03 _cell.length_c 57.27 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K6H _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H30 N6 O3' _chem_comp.formula_weight 474.555 _chem_comp.id 4WG _chem_comp.mon_nstd_flag . _chem_comp.name 2-{[2-ethoxy-4-(4-hydroxypiperidin-1-yl)phenyl]amino}-5,11-dimethyl-5,11-dihydro-6H-pyrimido[4,5-b][1,4]benzodiazepin-6-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 4WG sing 1 n n C19 N4 4WG sing 2 n n N1 C9 4WG doub 3 n y N1 C8 4WG sing 4 n y C9 C10 4WG sing 5 n y C1 O 4WG sing 6 n n O C2 4WG sing 7 n n C8 N 4WG sing 8 n n C8 N2 4WG doub 9 n y N4 C10 4WG sing 10 n n N4 C18 4WG sing 11 n n N C7 4WG sing 12 n n C10 C11 4WG doub 13 n y C2 C7 4WG doub 14 n y C2 C3 4WG sing 15 n y O1 C18 4WG doub 16 n n C7 C6 4WG sing 17 n y C18 C17 4WG sing 18 n n N2 C11 4WG sing 19 n y C11 N3 4WG sing 20 n n C3 C4 4WG doub 21 n y C17 C16 4WG doub 22 n y C17 C12 4WG sing 23 n y C6 C5 4WG doub 24 n y N3 C12 4WG sing 25 n n N3 C20 4WG sing 26 n n C16 C15 4WG sing 27 n y C12 C13 4WG doub 28 n y C4 C5 4WG sing 29 n y C4 N5 4WG sing 30 n n C15 C14 4WG doub 31 n y N5 C21 4WG sing 32 n n N5 C25 4WG sing 33 n n C21 C22 4WG sing 34 n n C13 C14 4WG sing 35 n y C25 C24 4WG sing 36 n n C22 C23 4WG sing 37 n n C24 C23 4WG sing 38 n n C23 O2 4WG sing 39 n n C1 H1 4WG sing 40 n n C1 H2 4WG sing 41 n n C3 H3 4WG sing 42 n n C5 H4 4WG sing 43 n n C6 H5 4WG sing 44 n n C15 H6 4WG sing 45 n n C16 H7 4WG sing 46 n n C19 H8 4WG sing 47 n n C19 H9 4WG sing 48 n n C19 H10 4WG sing 49 n n C21 H11 4WG sing 50 n n C21 H12 4WG sing 51 n n C23 H13 4WG sing 52 n n C24 H14 4WG sing 53 n n C24 H15 4WG sing 54 n n C9 H16 4WG sing 55 n n C14 H17 4WG sing 56 n n C13 H18 4WG sing 57 n n C20 H19 4WG sing 58 n n C20 H20 4WG sing 59 n n C20 H21 4WG sing 60 n n N H22 4WG sing 61 n n C H23 4WG sing 62 n n C H24 4WG sing 63 n n C H25 4WG sing 64 n n C25 H26 4WG sing 65 n n C25 H27 4WG sing 66 n n O2 H28 4WG sing 67 n n C22 H29 4WG sing 68 n n C22 H30 4WG sing 69 n n # _atom_sites.entry_id 7K6H _atom_sites.fract_transf_matrix[1][1] 0.023912 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01922 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017461 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4WG A 1 201 1 4WG LIG . C 3 HOH A 1 301 121 HOH HOH . C 3 HOH A 2 302 27 HOH HOH . C 3 HOH A 3 303 32 HOH HOH . C 3 HOH A 4 304 41 HOH HOH . C 3 HOH A 5 305 103 HOH HOH . C 3 HOH A 6 306 107 HOH HOH . C 3 HOH A 7 307 37 HOH HOH . C 3 HOH A 8 308 1 HOH HOH . C 3 HOH A 9 309 64 HOH HOH . C 3 HOH A 10 310 76 HOH HOH . C 3 HOH A 11 311 86 HOH HOH . C 3 HOH A 12 312 68 HOH HOH . C 3 HOH A 13 313 53 HOH HOH . C 3 HOH A 14 314 20 HOH HOH . C 3 HOH A 15 315 21 HOH HOH . C 3 HOH A 16 316 62 HOH HOH . C 3 HOH A 17 317 114 HOH HOH . C 3 HOH A 18 318 100 HOH HOH . C 3 HOH A 19 319 23 HOH HOH . C 3 HOH A 20 320 19 HOH HOH . C 3 HOH A 21 321 123 HOH HOH . C 3 HOH A 22 322 81 HOH HOH . C 3 HOH A 23 323 48 HOH HOH . C 3 HOH A 24 324 34 HOH HOH . C 3 HOH A 25 325 29 HOH HOH . C 3 HOH A 26 326 119 HOH HOH . C 3 HOH A 27 327 54 HOH HOH . C 3 HOH A 28 328 30 HOH HOH . C 3 HOH A 29 329 52 HOH HOH . C 3 HOH A 30 330 9 HOH HOH . C 3 HOH A 31 331 15 HOH HOH . C 3 HOH A 32 332 13 HOH HOH . C 3 HOH A 33 333 79 HOH HOH . C 3 HOH A 34 334 5 HOH HOH . C 3 HOH A 35 335 16 HOH HOH . C 3 HOH A 36 336 31 HOH HOH . C 3 HOH A 37 337 18 HOH HOH . C 3 HOH A 38 338 4 HOH HOH . C 3 HOH A 39 339 3 HOH HOH . C 3 HOH A 40 340 73 HOH HOH . C 3 HOH A 41 341 44 HOH HOH . C 3 HOH A 42 342 42 HOH HOH . C 3 HOH A 43 343 14 HOH HOH . C 3 HOH A 44 344 7 HOH HOH . C 3 HOH A 45 345 36 HOH HOH . C 3 HOH A 46 346 96 HOH HOH . C 3 HOH A 47 347 28 HOH HOH . C 3 HOH A 48 348 47 HOH HOH . C 3 HOH A 49 349 83 HOH HOH . C 3 HOH A 50 350 6 HOH HOH . C 3 HOH A 51 351 56 HOH HOH . C 3 HOH A 52 352 45 HOH HOH . C 3 HOH A 53 353 12 HOH HOH . C 3 HOH A 54 354 80 HOH HOH . C 3 HOH A 55 355 94 HOH HOH . C 3 HOH A 56 356 33 HOH HOH . C 3 HOH A 57 357 24 HOH HOH . C 3 HOH A 58 358 120 HOH HOH . C 3 HOH A 59 359 35 HOH HOH . C 3 HOH A 60 360 55 HOH HOH . C 3 HOH A 61 361 63 HOH HOH . C 3 HOH A 62 362 115 HOH HOH . C 3 HOH A 63 363 10 HOH HOH . C 3 HOH A 64 364 60 HOH HOH . C 3 HOH A 65 365 25 HOH HOH . C 3 HOH A 66 366 8 HOH HOH . C 3 HOH A 67 367 50 HOH HOH . C 3 HOH A 68 368 17 HOH HOH . C 3 HOH A 69 369 82 HOH HOH . C 3 HOH A 70 370 2 HOH HOH . C 3 HOH A 71 371 72 HOH HOH . C 3 HOH A 72 372 110 HOH HOH . C 3 HOH A 73 373 124 HOH HOH . C 3 HOH A 74 374 74 HOH HOH . C 3 HOH A 75 375 61 HOH HOH . C 3 HOH A 76 376 67 HOH HOH . C 3 HOH A 77 377 104 HOH HOH . C 3 HOH A 78 378 69 HOH HOH . C 3 HOH A 79 379 57 HOH HOH . C 3 HOH A 80 380 11 HOH HOH . C 3 HOH A 81 381 59 HOH HOH . C 3 HOH A 82 382 71 HOH HOH . C 3 HOH A 83 383 26 HOH HOH . C 3 HOH A 84 384 125 HOH HOH . C 3 HOH A 85 385 40 HOH HOH . C 3 HOH A 86 386 84 HOH HOH . C 3 HOH A 87 387 97 HOH HOH . C 3 HOH A 88 388 58 HOH HOH . C 3 HOH A 89 389 122 HOH HOH . C 3 HOH A 90 390 93 HOH HOH . C 3 HOH A 91 391 38 HOH HOH . C 3 HOH A 92 392 89 HOH HOH . C 3 HOH A 93 393 126 HOH HOH . C 3 HOH A 94 394 85 HOH HOH . C 3 HOH A 95 395 118 HOH HOH . C 3 HOH A 96 396 101 HOH HOH . C 3 HOH A 97 397 43 HOH HOH . C 3 HOH A 98 398 39 HOH HOH . C 3 HOH A 99 399 108 HOH HOH . C 3 HOH A 100 400 116 HOH HOH . C 3 HOH A 101 401 117 HOH HOH . C 3 HOH A 102 402 22 HOH HOH . C 3 HOH A 103 403 91 HOH HOH . C 3 HOH A 104 404 77 HOH HOH . C 3 HOH A 105 405 75 HOH HOH . C 3 HOH A 106 406 66 HOH HOH . C 3 HOH A 107 407 65 HOH HOH . C 3 HOH A 108 408 111 HOH HOH . C 3 HOH A 109 409 109 HOH HOH . C 3 HOH A 110 410 78 HOH HOH . C 3 HOH A 111 411 51 HOH HOH . C 3 HOH A 112 412 99 HOH HOH . C 3 HOH A 113 413 106 HOH HOH . C 3 HOH A 114 414 90 HOH HOH . C 3 HOH A 115 415 112 HOH HOH . C 3 HOH A 116 416 113 HOH HOH . C 3 HOH A 117 417 87 HOH HOH . C 3 HOH A 118 418 46 HOH HOH . C 3 HOH A 119 419 105 HOH HOH . C 3 HOH A 120 420 92 HOH HOH . C 3 HOH A 121 421 88 HOH HOH . C 3 HOH A 122 422 102 HOH HOH . C 3 HOH A 123 423 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4WG . . . B 2 -19.808 5.649 -8.337 1 31.1 ? C1 4WG 201 A 1 HETATM 2 C C2 4WG . . . B 2 -19.808 7.696 -7.083 1 27.3 ? C2 4WG 201 A 1 HETATM 3 C C3 4WG . . . B 2 -20.655 7.141 -6.106 1 28.07 ? C3 4WG 201 A 1 HETATM 4 C C4 4WG . . . B 2 -20.905 7.93 -4.909 1 28.6 ? C4 4WG 201 A 1 HETATM 5 C C5 4WG . . . B 2 -20.31 9.241 -4.702 1 26.15 ? C5 4WG 201 A 1 HETATM 6 C C6 4WG . . . B 2 -19.486 9.721 -5.726 1 25.22 ? C6 4WG 201 A 1 HETATM 7 C C7 4WG . . . B 2 -19.233 8.961 -6.898 1 24.66 ? C7 4WG 201 A 1 HETATM 8 C C8 4WG . . . B 2 -17.643 10.418 -8.037 1 20.48 ? C8 4WG 201 A 1 HETATM 9 C C11 4WG . . . B 2 -16.593 12.384 -7.162 1 19.75 ? C11 4WG 201 A 1 HETATM 10 C C12 4WG . . . B 2 -16.845 14.627 -6.451 1 21.26 ? C12 4WG 201 A 1 HETATM 11 C C15 4WG . . . B 2 -17.628 17.308 -7.073 1 22.79 ? C15 4WG 201 A 1 HETATM 12 C C16 4WG . . . B 2 -16.629 16.663 -7.815 1 22.47 ? C16 4WG 201 A 1 HETATM 13 C C17 4WG . . . B 2 -16.22 15.334 -7.525 1 21.14 ? C17 4WG 201 A 1 HETATM 14 C C18 4WG . . . B 2 -15.095 14.823 -8.234 1 19.94 ? C18 4WG 201 A 1 HETATM 15 C C19 4WG . . . B 2 -13.653 13.046 -9.143 1 19.3 ? C19 4WG 201 A 1 HETATM 16 C C21 4WG . . . B 2 -21.654 5.959 -3.683 1 32.81 ? C21 4WG 201 A 1 HETATM 17 C C23 4WG . . . B 2 -22.635 6.347 -1.356 1 34.67 ? C23 4WG 201 A 1 HETATM 18 C C24 4WG . . . B 2 -23.197 7.68 -1.893 1 34.1 ? C24 4WG 201 A 1 HETATM 19 O O1 4WG . . . B 2 -14.193 15.643 -8.528 1 19.02 ? O1 4WG 201 A 1 HETATM 20 N N4 4WG . . . B 2 -14.898 13.484 -8.521 1 18.26 ? N4 4WG 201 A 1 HETATM 21 C C10 4WG . . . B 2 -15.949 12.589 -8.401 1 18.55 ? C10 4WG 201 A 1 HETATM 22 C C9 4WG . . . B 2 -16.222 11.653 -9.432 1 18.91 ? C9 4WG 201 A 1 HETATM 23 N N1 4WG . . . B 2 -17.047 10.605 -9.228 1 19.95 ? N1 4WG 201 A 1 HETATM 24 C C14 4WG . . . B 2 -18.237 16.624 -6.021 1 22.83 ? C14 4WG 201 A 1 HETATM 25 C C13 4WG . . . B 2 -17.855 15.306 -5.721 1 22.6 ? C13 4WG 201 A 1 HETATM 26 N N3 4WG . . . B 2 -16.578 13.296 -6.131 1 21.34 ? N3 4WG 201 A 1 HETATM 27 C C20 4WG . . . B 2 -16.825 12.754 -4.803 1 21.66 ? C20 4WG 201 A 1 HETATM 28 N N2 4WG . . . B 2 -17.407 11.302 -7.038 1 20.2 ? N2 4WG 201 A 1 HETATM 29 N N 4WG . . . B 2 -18.453 9.343 -7.94 1 22.33 ? N 4WG 201 A 1 HETATM 30 O O 4WG . . . B 2 -19.512 7.051 -8.259 1 29.46 ? O 4WG 201 A 1 HETATM 31 C C 4WG . . . B 2 -19.423 5.169 -9.743 1 31.72 ? C 4WG 201 A 1 HETATM 32 N N5 4WG . . . B 2 -21.725 7.401 -3.923 1 31.66 ? N5 4WG 201 A 1 HETATM 33 C C25 4WG . . . B 2 -22.143 8.292 -2.845 1 33.31 ? C25 4WG 201 A 1 HETATM 34 O O2 4WG . . . B 2 -23.427 5.799 -0.301 1 35.73 ? O2 4WG 201 A 1 HETATM 35 C C22 4WG . . . B 2 -22.553 5.383 -2.556 1 34.25 ? C22 4WG 201 A 1 HETATM 36 H H1 4WG . . . B 2 -20.767 5.502 -8.184 1 37.35 ? H1 4WG 201 A 1 HETATM 37 H H2 4WG . . . B 2 -19.285 5.16 -7.664 1 37.35 ? H2 4WG 201 A 1 HETATM 38 H H3 4WG . . . B 2 -21.062 6.257 -6.228 1 33.71 ? H3 4WG 201 A 1 HETATM 39 H H4 4WG . . . B 2 -20.481 9.763 -3.89 1 31.41 ? H4 4WG 201 A 1 HETATM 40 H H5 4WG . . . B 2 -19.065 10.601 -5.628 1 30.3 ? H5 4WG 201 A 1 HETATM 41 H H6 4WG . . . B 2 -17.986 18.169 -7.373 1 27.37 ? H6 4WG 201 A 1 HETATM 42 H H7 4WG . . . B 2 -16.2 17.143 -8.555 1 26.99 ? H7 4WG 201 A 1 HETATM 43 H H8 4WG . . . B 2 -13.005 12.805 -8.445 1 23.19 ? H8 4WG 201 A 1 HETATM 44 H H9 4WG . . . B 2 -13.828 12.264 -9.712 1 23.19 ? H9 4WG 201 A 1 HETATM 45 H H10 4WG . . . B 2 -13.287 13.775 -9.692 1 23.19 ? H10 4WG 201 A 1 HETATM 46 H H11 4WG . . . B 2 -21.892 5.503 -4.521 1 39.4 ? H11 4WG 201 A 1 HETATM 47 H H12 4WG . . . B 2 -20.722 5.735 -3.469 1 39.4 ? H12 4WG 201 A 1 HETATM 48 H H13 4WG . . . B 2 -21.726 6.504 -1.017 1 41.63 ? H13 4WG 201 A 1 HETATM 49 H H14 4WG . . . B 2 -24.033 7.515 -2.383 1 40.95 ? H14 4WG 201 A 1 HETATM 50 H H15 4WG . . . B 2 -23.366 8.295 -1.145 1 40.95 ? H15 4WG 201 A 1 HETATM 51 H H16 4WG . . . B 2 -15.795 11.765 -10.307 1 22.73 ? H16 4WG 201 A 1 HETATM 52 H H17 4WG . . . B 2 -18.934 17.064 -5.49 1 27.43 ? H17 4WG 201 A 1 HETATM 53 H H18 4WG . . . B 2 -18.301 14.841 -4.983 1 27.15 ? H18 4WG 201 A 1 HETATM 54 H H19 4WG . . . B 2 -17.223 13.45 -4.235 1 26.02 ? H19 4WG 201 A 1 HETATM 55 H H20 4WG . . . B 2 -15.976 12.455 -4.408 1 26.02 ? H20 4WG 201 A 1 HETATM 56 H H21 4WG . . . B 2 -17.442 11.992 -4.87 1 26.02 ? H21 4WG 201 A 1 HETATM 57 H H22 4WG . . . B 2 -18.48 8.798 -8.677 1 26.82 ? H22 4WG 201 A 1 HETATM 58 H H23 4WG . . . B 2 -18.456 5.282 -9.875 1 38.09 ? H23 4WG 201 A 1 HETATM 59 H H24 4WG . . . B 2 -19.909 5.697 -10.413 1 38.09 ? H24 4WG 201 A 1 HETATM 60 H H25 4WG . . . B 2 -19.658 4.219 -9.841 1 38.09 ? H25 4WG 201 A 1 HETATM 61 H H26 4WG . . . B 2 -21.351 8.537 -2.318 1 40 ? H26 4WG 201 A 1 HETATM 62 H H27 4WG . . . B 2 -22.52 9.108 -3.243 1 40 ? H27 4WG 201 A 1 HETATM 63 H H28 4WG . . . B 2 -22.902 5.6 0.392 1 42.91 ? H28 4WG 201 A 1 HETATM 64 H H29 4WG . . . B 2 -22.18 4.524 -2.253 1 41.12 ? H29 4WG 201 A 1 HETATM 65 H H30 4WG . . . B 2 -23.458 5.233 -2.91 1 41.12 ? H30 4WG 201 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 65 #