data_7K6O # _model_server_result.job_id vjVx3nHXRO_Rxn5RKJNUzw _model_server_result.datetime_utc '2024-10-18 17:24:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k6o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":9001}' # _entry.id 7K6O # _exptl.entry_id 7K6O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 461.541 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S)-3-[4-(2-aminopyrimidin-5-yl)-2-(morpholin-4-yl)-5,6-dihydro-7H-pyrrolo[2,3-d]pyrimidin-7-yl]-N-methylpyrrolidine-1-sulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7K6O _cell.length_a 57.92 _cell.length_b 135.777 _cell.length_c 141.126 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K6O _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H27 N9 O3 S' _chem_comp.formula_weight 461.541 _chem_comp.id VY1 _chem_comp.mon_nstd_flag . _chem_comp.name (3S)-3-[4-(2-aminopyrimidin-5-yl)-2-(morpholin-4-yl)-5,6-dihydro-7H-pyrrolo[2,3-d]pyrimidin-7-yl]-N-methylpyrrolidine-1-sulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N25 C24 VY1 sing 376 n n N23 C24 VY1 doub 377 n y N23 C22 VY1 sing 378 n y C24 N26 VY1 sing 379 n y C22 C21 VY1 doub 380 n y N26 C27 VY1 doub 381 n y C21 C27 VY1 sing 382 n y C21 C20 VY1 sing 383 n n C14 C15 VY1 sing 384 n n C14 C13 VY1 sing 385 n n C20 C15 VY1 doub 386 n y C20 N19 VY1 sing 387 n y C15 C16 VY1 sing 388 n y C13 N12 VY1 sing 389 n n N19 C18 VY1 doub 390 n y C16 N12 VY1 sing 391 n n C16 N17 VY1 doub 392 n y C18 N28 VY1 sing 393 n n C18 N17 VY1 sing 394 n y C32 C33 VY1 sing 395 n n C32 O31 VY1 sing 396 n n N12 C9 VY1 sing 397 n n C33 N28 VY1 sing 398 n n C9 C8 VY1 sing 399 n n C9 C11 VY1 sing 400 n n N28 C29 VY1 sing 401 n n C8 C7 VY1 sing 402 n n O31 C30 VY1 sing 403 n n C30 C29 VY1 sing 404 n n C7 N6 VY1 sing 405 n n C11 N6 VY1 sing 406 n n N2 C1 VY1 sing 407 n n N2 S3 VY1 sing 408 n n N6 S3 VY1 sing 409 n n S3 O5 VY1 doub 410 n n S3 O4 VY1 doub 411 n n C22 H48 VY1 sing 412 n n C27 H51 VY1 sing 413 n n C14 H47 VY1 sing 414 n n C14 H46 VY1 sing 415 n n C8 H40 VY1 sing 416 n n C8 H41 VY1 sing 417 n n C13 H45 VY1 sing 418 n n C13 H44 VY1 sing 419 n n C7 H39 VY1 sing 420 n n C7 H38 VY1 sing 421 n n C29 H52 VY1 sing 422 n n C29 H53 VY1 sing 423 n n C33 H59 VY1 sing 424 n n C33 H58 VY1 sing 425 n n C11 H43 VY1 sing 426 n n C11 H42 VY1 sing 427 n n C30 H54 VY1 sing 428 n n C30 H55 VY1 sing 429 n n C32 H57 VY1 sing 430 n n C32 H56 VY1 sing 431 n n C9 H10 VY1 sing 432 n n C1 H36 VY1 sing 433 n n C1 H34 VY1 sing 434 n n C1 H35 VY1 sing 435 n n N25 H49 VY1 sing 436 n n N25 H50 VY1 sing 437 n n N2 H37 VY1 sing 438 n n # _atom_sites.entry_id 7K6O _atom_sites.fract_transf_matrix[1][1] 0.017265 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007365 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007086 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VY1 A 1 9001 9001 VY1 UNL . C 3 HOH A 1 9101 95 HOH HOH . C 3 HOH A 2 9102 48 HOH HOH . C 3 HOH A 3 9103 3 HOH HOH . C 3 HOH A 4 9104 70 HOH HOH . C 3 HOH A 5 9105 13 HOH HOH . C 3 HOH A 6 9106 58 HOH HOH . C 3 HOH A 7 9107 87 HOH HOH . C 3 HOH A 8 9108 81 HOH HOH . C 3 HOH A 9 9109 17 HOH HOH . C 3 HOH A 10 9110 2 HOH HOH . C 3 HOH A 11 9111 57 HOH HOH . C 3 HOH A 12 9112 34 HOH HOH . C 3 HOH A 13 9113 9 HOH HOH . C 3 HOH A 14 9114 42 HOH HOH . C 3 HOH A 15 9115 90 HOH HOH . C 3 HOH A 16 9116 18 HOH HOH . C 3 HOH A 17 9117 8 HOH HOH . C 3 HOH A 18 9118 69 HOH HOH . C 3 HOH A 19 9119 11 HOH HOH . C 3 HOH A 20 9120 7 HOH HOH . C 3 HOH A 21 9121 19 HOH HOH . C 3 HOH A 22 9122 41 HOH HOH . C 3 HOH A 23 9123 5 HOH HOH . C 3 HOH A 24 9124 63 HOH HOH . C 3 HOH A 25 9125 30 HOH HOH . C 3 HOH A 26 9126 4 HOH HOH . C 3 HOH A 27 9127 52 HOH HOH . C 3 HOH A 28 9128 46 HOH HOH . C 3 HOH A 29 9129 12 HOH HOH . C 3 HOH A 30 9130 92 HOH HOH . C 3 HOH A 31 9131 28 HOH HOH . C 3 HOH A 32 9132 51 HOH HOH . C 3 HOH A 33 9133 49 HOH HOH . C 3 HOH A 34 9134 64 HOH HOH . C 3 HOH A 35 9135 31 HOH HOH . C 3 HOH A 36 9136 61 HOH HOH . C 3 HOH A 37 9137 73 HOH HOH . C 3 HOH A 38 9138 10 HOH HOH . C 3 HOH A 39 9139 32 HOH HOH . C 3 HOH A 40 9140 59 HOH HOH . C 3 HOH A 41 9141 79 HOH HOH . C 3 HOH A 42 9142 44 HOH HOH . C 3 HOH A 43 9143 65 HOH HOH . C 3 HOH A 44 9144 22 HOH HOH . C 3 HOH A 45 9145 43 HOH HOH . C 3 HOH A 46 9146 77 HOH HOH . C 3 HOH A 47 9147 24 HOH HOH . C 3 HOH A 48 9148 14 HOH HOH . C 3 HOH A 49 9149 26 HOH HOH . C 3 HOH A 50 9150 45 HOH HOH . C 3 HOH A 51 9151 36 HOH HOH . C 3 HOH A 52 9152 25 HOH HOH . C 3 HOH A 53 9153 56 HOH HOH . C 3 HOH A 54 9154 60 HOH HOH . C 3 HOH A 55 9155 16 HOH HOH . C 3 HOH A 56 9156 35 HOH HOH . C 3 HOH A 57 9157 80 HOH HOH . C 3 HOH A 58 9158 40 HOH HOH . C 3 HOH A 59 9159 21 HOH HOH . C 3 HOH A 60 9160 78 HOH HOH . C 3 HOH A 61 9161 6 HOH HOH . C 3 HOH A 62 9162 37 HOH HOH . C 3 HOH A 63 9163 88 HOH HOH . C 3 HOH A 64 9164 29 HOH HOH . C 3 HOH A 65 9165 82 HOH HOH . C 3 HOH A 66 9166 50 HOH HOH . C 3 HOH A 67 9167 20 HOH HOH . C 3 HOH A 68 9168 85 HOH HOH . C 3 HOH A 69 9169 94 HOH HOH . C 3 HOH A 70 9170 91 HOH HOH . C 3 HOH A 71 9171 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C22 VY1 . . . B 2 -15.079 7.555 24.429 1 97.97 ? C22 VY1 9001 A 1 HETATM 2 C C27 VY1 . . . B 2 -16.221 5.801 25.595 1 98.14 ? C27 VY1 9001 A 1 HETATM 3 C C21 VY1 . . . B 2 -16.014 7.173 25.405 1 98.63 ? C21 VY1 9001 A 1 HETATM 4 C C15 VY1 . . . B 2 -18.064 8.056 26.483 1 100.52 ? C15 VY1 9001 A 1 HETATM 5 C C20 VY1 . . . B 2 -16.714 8.163 26.206 1 99.61 ? C20 VY1 9001 A 1 HETATM 6 C C16 VY1 . . . B 2 -18.649 9.068 27.284 1 100.83 ? C16 VY1 9001 A 1 HETATM 7 C C18 VY1 . . . B 2 -16.642 10.168 27.396 1 99.21 ? C18 VY1 9001 A 1 HETATM 8 C C24 VY1 . . . B 2 -14.718 5.333 23.906 1 97.45 ? C24 VY1 9001 A 1 HETATM 9 C C14 VY1 . . . B 2 -19.089 7.074 26.064 1 101.14 ? C14 VY1 9001 A 1 HETATM 10 C C8 VY1 . . . B 2 -22.387 9.424 27.867 1 104.99 ? C8 VY1 9001 A 1 HETATM 11 C C13 VY1 . . . B 2 -20.407 7.706 26.579 1 101.69 ? C13 VY1 9001 A 1 HETATM 12 C C7 VY1 . . . B 2 -23.02 10.446 28.815 1 105.81 ? C7 VY1 9001 A 1 HETATM 13 C C29 VY1 . . . B 2 -16.439 12.254 28.748 1 98.11 ? C29 VY1 9001 A 1 HETATM 14 C C33 VY1 . . . B 2 -14.438 11.294 27.682 1 98 ? C33 VY1 9001 A 1 HETATM 15 C C11 VY1 . . . B 2 -20.628 10.614 29.091 1 105.35 ? C11 VY1 9001 A 1 HETATM 16 C C30 VY1 . . . B 2 -15.875 13.648 28.405 1 97.93 ? C30 VY1 9001 A 1 HETATM 17 C C32 VY1 . . . B 2 -13.975 12.736 27.4 1 97.98 ? C32 VY1 9001 A 1 HETATM 18 C C9 VY1 . . . B 2 -20.925 9.899 27.745 1 104.17 ? C9 VY1 9001 A 1 HETATM 19 C C1 VY1 . . . B 2 -20.751 14.332 29.716 1 106.74 ? C1 VY1 9001 A 1 HETATM 20 N N23 VY1 . . . B 2 -14.421 6.673 23.658 1 97.5 ? N23 VY1 9001 A 1 HETATM 21 N N26 VY1 . . . B 2 -15.601 4.852 24.873 1 97.76 ? N26 VY1 9001 A 1 HETATM 22 N N19 VY1 . . . B 2 -15.968 9.212 26.659 1 99.47 ? N19 VY1 9001 A 1 HETATM 23 N N17 VY1 . . . B 2 -17.994 10.151 27.76 1 99.9 ? N17 VY1 9001 A 1 HETATM 24 N N12 VY1 . . . B 2 -20.004 8.758 27.569 1 102.17 ? N12 VY1 9001 A 1 HETATM 25 N N28 VY1 . . . B 2 -15.914 11.302 27.751 1 98.37 ? N28 VY1 9001 A 1 HETATM 26 N N6 VY1 . . . B 2 -21.939 10.824 29.757 1 106.36 ? N6 VY1 9001 A 1 HETATM 27 N N25 VY1 . . . B 2 -14.084 4.4 23.133 1 97.47 ? N25 VY1 9001 A 1 HETATM 28 N N2 VY1 . . . B 2 -21.921 13.452 29.67 1 107.08 ? N2 VY1 9001 A 1 HETATM 29 O O4 VY1 . . . B 2 -21.168 12.238 31.701 1 107.86 ? O4 VY1 9001 A 1 HETATM 30 O O5 VY1 . . . B 2 -23.554 12.216 31.045 1 107.69 ? O5 VY1 9001 A 1 HETATM 31 O O31 VY1 . . . B 2 -14.475 13.624 28.362 1 97.91 ? O31 VY1 9001 A 1 HETATM 32 S S3 VY1 . . . B 2 -22.174 12.194 30.701 1 107.54 ? S3 VY1 9001 A 1 HETATM 33 H H48 VY1 . . . B 2 -14.837 8.612 24.242 1 117.56 ? H48 VY1 9001 A 1 HETATM 34 H H51 VY1 . . . B 2 -16.893 5.413 26.374 1 117.77 ? H51 VY1 9001 A 1 HETATM 35 H H47 VY1 . . . B 2 -18.926 6.074 26.515 1 121.37 ? H47 VY1 9001 A 1 HETATM 36 H H46 VY1 . . . B 2 -19.096 6.908 24.97 1 121.37 ? H46 VY1 9001 A 1 HETATM 37 H H40 VY1 . . . B 2 -22.471 8.404 28.296 1 125.99 ? H40 VY1 9001 A 1 HETATM 38 H H41 VY1 . . . B 2 -22.906 9.378 26.891 1 125.99 ? H41 VY1 9001 A 1 HETATM 39 H H45 VY1 . . . B 2 -21.048 6.962 27.098 1 122.03 ? H45 VY1 9001 A 1 HETATM 40 H H44 VY1 . . . B 2 -21.02 8.108 25.741 1 122.03 ? H44 VY1 9001 A 1 HETATM 41 H H39 VY1 . . . B 2 -23.888 10.026 29.372 1 126.98 ? H39 VY1 9001 A 1 HETATM 42 H H38 VY1 . . . B 2 -23.427 11.319 28.249 1 126.98 ? H38 VY1 9001 A 1 HETATM 43 H H52 VY1 . . . B 2 -16.153 11.953 29.785 1 117.73 ? H52 VY1 9001 A 1 HETATM 44 H H53 VY1 . . . B 2 -17.552 12.302 28.754 1 117.73 ? H53 VY1 9001 A 1 HETATM 45 H H59 VY1 . . . B 2 -13.994 10.911 28.632 1 117.6 ? H59 VY1 9001 A 1 HETATM 46 H H58 VY1 . . . B 2 -14.047 10.623 26.882 1 117.6 ? H58 VY1 9001 A 1 HETATM 47 H H43 VY1 . . . B 2 -20.067 11.563 28.921 1 126.42 ? H43 VY1 9001 A 1 HETATM 48 H H42 VY1 . . . B 2 -19.978 10.006 29.764 1 126.42 ? H42 VY1 9001 A 1 HETATM 49 H H54 VY1 . . . B 2 -16.313 14.042 27.46 1 117.52 ? H54 VY1 9001 A 1 HETATM 50 H H55 VY1 . . . B 2 -16.111 14.384 29.203 1 117.52 ? H55 VY1 9001 A 1 HETATM 51 H H57 VY1 . . . B 2 -14.242 13.053 26.366 1 117.57 ? H57 VY1 9001 A 1 HETATM 52 H H56 VY1 . . . B 2 -12.872 12.829 27.491 1 117.57 ? H56 VY1 9001 A 1 HETATM 53 H H10 VY1 . . . B 2 -20.838 10.633 26.896 1 125 ? H10 VY1 9001 A 1 HETATM 54 H H36 VY1 . . . B 2 -20.391 14.597 28.705 1 128.09 ? H36 VY1 9001 A 1 HETATM 55 H H34 VY1 . . . B 2 -19.894 13.867 30.239 1 128.09 ? H34 VY1 9001 A 1 HETATM 56 H H35 VY1 . . . B 2 -20.958 15.287 30.237 1 128.09 ? H35 VY1 9001 A 1 HETATM 57 H H49 VY1 . . . B 2 -13.422 4.682 22.433 1 116.96 ? H49 VY1 9001 A 1 HETATM 58 H H50 VY1 . . . B 2 -14.251 3.42 23.274 1 116.96 ? H50 VY1 9001 A 1 HETATM 59 H H37 VY1 . . . B 2 -22.629 13.806 29.027 1 128.5 ? H37 VY1 9001 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 59 #