data_7K77 # _model_server_result.job_id e_CTN5DB1uqxusuI73UPpw _model_server_result.datetime_utc '2024-11-16 12:24:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k77 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 7K77 # _exptl.entry_id 7K77 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 434.369 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-2-[2-(trifluoromethyl)phenyl]-3,6-dihydropyrimidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7K77 _cell.length_a 89.731 _cell.length_b 89.731 _cell.length_c 130.958 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K77 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc2 A OD2 ASP 109 A ASP 108 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc3 A OD1 ASP 109 A ASP 108 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc4 A OE2 GLU 120 A GLU 119 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc5 A O ILE 121 A ILE 120 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc6 C MN MN . A MN 402 1_555 E O15 U3A . A U3A 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc7 C MN MN . A MN 402 1_555 E O13 U3A . A U3A 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc8 D MN MN . A MN 403 1_555 E O10 U3A . A U3A 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.718 ? metalc ? metalc9 D MN MN . A MN 403 1_555 E O13 U3A . A U3A 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc10 D MN MN . A MN 403 1_555 H O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc11 D MN MN . A MN 403 1_555 H O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? # _chem_comp.formula 'C20 H17 F3 N4 O4' _chem_comp.formula_weight 434.369 _chem_comp.id U3A _chem_comp.mon_nstd_flag . _chem_comp.name 5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-2-[2-(trifluoromethyl)phenyl]-3,6-dihydropyrimidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O15 C14 U3A doub 471 n n O13 C12 U3A sing 472 n n C14 C12 U3A sing 473 n n C14 N16 U3A sing 474 n n C12 C11 U3A doub 475 n n N16 C17 U3A doub 476 n n C11 N18 U3A sing 477 n n C11 C09 U3A sing 478 n n C17 N18 U3A sing 479 n n C17 C19 U3A sing 480 n n F27 C25 U3A sing 481 n n O10 C09 U3A doub 482 n n C09 N08 U3A sing 483 n n C19 C20 U3A doub 484 n y C19 C24 U3A sing 485 n y C20 C21 U3A sing 486 n y C25 C24 U3A sing 487 n n C25 F26 U3A sing 488 n n C25 F28 U3A sing 489 n n C24 C23 U3A doub 490 n y C21 C22 U3A doub 491 n y N08 C07 U3A sing 492 n n C23 C22 U3A sing 493 n y C07 C06 U3A sing 494 n n C01 O02 U3A sing 495 n n C06 C05 U3A sing 496 n n C04 C05 U3A doub 497 n y C04 C03 U3A sing 498 n y O02 C03 U3A sing 499 n n C05 C29 U3A sing 500 n y C03 N31 U3A doub 501 n y C29 C30 U3A doub 502 n y N31 C30 U3A sing 503 n y C29 H1 U3A sing 504 n n C01 H2 U3A sing 505 n n C01 H3 U3A sing 506 n n C01 H4 U3A sing 507 n n C04 H5 U3A sing 508 n n C06 H6 U3A sing 509 n n C06 H7 U3A sing 510 n n C07 H8 U3A sing 511 n n C07 H9 U3A sing 512 n n C20 H10 U3A sing 513 n n C21 H11 U3A sing 514 n n C22 H12 U3A sing 515 n n C23 H13 U3A sing 516 n n C30 H14 U3A sing 517 n n N08 H15 U3A sing 518 n n N18 H16 U3A sing 519 n n O13 H17 U3A sing 520 n n # _atom_sites.entry_id 7K77 _atom_sites.fract_transf_matrix[1][1] 0.011144 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007636 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 QQ4 A 1 401 401 QQ4 PVP . C 3 MN A 1 402 201 MN MN . D 3 MN A 1 403 202 MN MN . E 4 U3A A 1 404 301 U3A 359 . F 5 SO4 A 1 405 1 SO4 SO4 . G 5 SO4 A 1 406 2 SO4 SO4 . H 6 HOH A 1 501 26 HOH HOH . H 6 HOH A 2 502 2 HOH HOH . H 6 HOH A 3 503 6 HOH HOH . H 6 HOH A 4 504 1 HOH HOH . H 6 HOH A 5 505 5 HOH HOH . H 6 HOH A 6 506 25 HOH HOH . H 6 HOH A 7 507 11 HOH HOH . H 6 HOH A 8 508 29 HOH HOH . H 6 HOH A 9 509 10 HOH HOH . H 6 HOH A 10 510 8 HOH HOH . H 6 HOH A 11 511 40 HOH HOH . H 6 HOH A 12 512 24 HOH HOH . H 6 HOH A 13 513 4 HOH HOH . H 6 HOH A 14 514 12 HOH HOH . H 6 HOH A 15 515 3 HOH HOH . H 6 HOH A 16 516 18 HOH HOH . H 6 HOH A 17 517 19 HOH HOH . H 6 HOH A 18 518 28 HOH HOH . H 6 HOH A 19 519 30 HOH HOH . H 6 HOH A 20 520 34 HOH HOH . H 6 HOH A 21 521 16 HOH HOH . H 6 HOH A 22 522 33 HOH HOH . H 6 HOH A 23 523 35 HOH HOH . H 6 HOH A 24 524 15 HOH HOH . H 6 HOH A 25 525 20 HOH HOH . H 6 HOH A 26 526 27 HOH HOH . H 6 HOH A 27 527 37 HOH HOH . H 6 HOH A 28 528 22 HOH HOH . H 6 HOH A 29 529 39 HOH HOH . H 6 HOH A 30 530 21 HOH HOH . H 6 HOH A 31 531 17 HOH HOH . H 6 HOH A 32 532 36 HOH HOH . H 6 HOH A 33 533 9 HOH HOH . H 6 HOH A 34 534 23 HOH HOH . H 6 HOH A 35 535 31 HOH HOH . H 6 HOH A 36 536 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 U3A . . . E 4 -3.511 -29.755 16.177 1 61.51 ? C11 U3A 404 A 1 HETATM 2 C C12 U3A . . . E 4 -4.067 -29.132 17.316 1 53.8 ? C12 U3A 404 A 1 HETATM 3 C C25 U3A . . . E 4 -8.323 -29.222 14.574 1 65.13 ? C25 U3A 404 A 1 HETATM 4 C C29 U3A . . . E 4 -3.506 -29.744 10.898 1 66.64 ? C29 U3A 404 A 1 HETATM 5 F F27 U3A . . . E 4 -9.455 -28.913 13.876 1 65.08 ? F27 U3A 404 A 1 HETATM 6 F F28 U3A . . . E 4 -7.302 -28.388 14.217 1 58.5 ? F28 U3A 404 A 1 HETATM 7 C C03 U3A . . . E 4 -3.305 -32.329 9.977 1 66.33 ? C03 U3A 404 A 1 HETATM 8 C C04 U3A . . . E 4 -2.464 -31.886 10.971 1 71.05 ? C04 U3A 404 A 1 HETATM 9 C C05 U3A . . . E 4 -2.556 -30.592 11.429 1 73.45 ? C05 U3A 404 A 1 HETATM 10 C C06 U3A . . . E 4 -1.622 -30.109 12.529 1 59.31 ? C06 U3A 404 A 1 HETATM 11 C C07 U3A . . . E 4 -1.82 -31.031 13.731 1 68.57 ? C07 U3A 404 A 1 HETATM 12 C C09 U3A . . . E 4 -1.992 -29.713 15.958 1 61.93 ? C09 U3A 404 A 1 HETATM 13 C C14 U3A . . . E 4 -5.505 -29.151 17.545 1 53.69 ? C14 U3A 404 A 1 HETATM 14 C C17 U3A . . . E 4 -5.721 -30.407 15.474 1 56.15 ? C17 U3A 404 A 1 HETATM 15 C C19 U3A . . . E 4 -6.662 -31.13 14.535 1 60.43 ? C19 U3A 404 A 1 HETATM 16 C C20 U3A . . . E 4 -6.29 -32.396 14.133 1 68.76 ? C20 U3A 404 A 1 HETATM 17 C C21 U3A . . . E 4 -7.129 -33.12 13.302 1 74.17 ? C21 U3A 404 A 1 HETATM 18 C C22 U3A . . . E 4 -8.346 -32.59 12.896 1 72.07 ? C22 U3A 404 A 1 HETATM 19 C C23 U3A . . . E 4 -8.729 -31.329 13.312 1 63.18 ? C23 U3A 404 A 1 HETATM 20 C C24 U3A . . . E 4 -7.887 -30.611 14.145 1 64.52 ? C24 U3A 404 A 1 HETATM 21 C C30 U3A . . . E 4 -4.342 -30.236 9.894 1 63.41 ? C30 U3A 404 A 1 HETATM 22 F F26 U3A . . . E 4 -8.555 -29.171 15.929 1 76.49 ? F26 U3A 404 A 1 HETATM 23 N N08 U3A . . . E 4 -1.27 -30.316 14.854 1 59.31 ? N08 U3A 404 A 1 HETATM 24 N N16 U3A . . . E 4 -6.292 -29.794 16.643 1 54.4 ? N16 U3A 404 A 1 HETATM 25 N N18 U3A . . . E 4 -4.352 -30.406 15.255 1 58.78 ? N18 U3A 404 A 1 HETATM 26 N N31 U3A . . . E 4 -4.216 -31.503 9.465 1 65.91 ? N31 U3A 404 A 1 HETATM 27 O O10 U3A . . . E 4 -1.314 -29.163 16.757 1 66.18 ? O10 U3A 404 A 1 HETATM 28 O O13 U3A . . . E 4 -3.262 -28.475 18.255 1 54.83 ? O13 U3A 404 A 1 HETATM 29 O O15 U3A . . . E 4 -6.098 -28.531 18.663 1 47.07 ? O15 U3A 404 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #