data_7K7T # _model_server_result.job_id fV2Yk7TbVHpybgmW47yX5A _model_server_result.datetime_utc '2024-10-19 22:19:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k7t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 7K7T # _exptl.entry_id 7K7T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.952 _cell.angle_gamma 90 _cell.entry_id 7K7T _cell.length_a 52.424 _cell.length_b 109.934 _cell.length_c 70.39 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K7T _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 32 A ASN 60 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc2 A SG CYS 401 A CYS 429 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc3 A SG CYS 404 A CYS 432 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc4 A SG CYS 425 A CYS 453 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc5 A SG CYS 436 A CYS 464 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc6 D MG MG . A MG 502 1_555 E O1B ANP . A ANP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc7 D MG MG . A MG 502 1_555 E O1G ANP . A ANP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc8 D MG MG . A MG 502 1_555 E O1A ANP . A ANP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc9 D MG MG . A MG 502 1_555 E O3A ANP . A ANP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc10 D MG MG . A MG 502 1_555 I O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc11 B OD1 ASN 32 B ASN 60 1_555 G MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc12 B SG CYS 401 B CYS 429 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc13 B SG CYS 404 B CYS 432 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc14 B SG CYS 425 B CYS 453 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc15 B SG CYS 436 B CYS 464 1_555 F ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc16 G MG MG . B MG 502 1_555 H O3A ANP . B ANP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? metalc ? metalc17 G MG MG . B MG 502 1_555 H O1A ANP . B ANP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc18 G MG MG . B MG 502 1_555 H O1G ANP . B ANP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc19 G MG MG . B MG 502 1_555 H O1B ANP . B ANP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc20 G MG MG . B MG 502 1_555 J O HOH . B HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7K7T _atom_sites.fract_transf_matrix[1][1] 0.019075 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001989 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009096 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014284 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 501 1 ZN ZN . D 3 MG A 1 502 2 MG MG . E 4 ANP A 1 503 3 ANP ANP . F 2 ZN B 1 501 1 ZN ZN . G 3 MG B 1 502 2 MG MG . H 4 ANP B 1 503 3 ANP ANP . I 5 HOH A 1 601 29 HOH HOH . I 5 HOH A 2 602 21 HOH HOH . I 5 HOH A 3 603 28 HOH HOH . I 5 HOH A 4 604 18 HOH HOH . I 5 HOH A 5 605 12 HOH HOH . I 5 HOH A 6 606 24 HOH HOH . I 5 HOH A 7 607 27 HOH HOH . I 5 HOH A 8 608 4 HOH HOH . I 5 HOH A 9 609 6 HOH HOH . I 5 HOH A 10 610 19 HOH HOH . I 5 HOH A 11 611 16 HOH HOH . I 5 HOH A 12 612 20 HOH HOH . I 5 HOH A 13 613 23 HOH HOH . I 5 HOH A 14 614 3 HOH HOH . I 5 HOH A 15 615 1 HOH HOH . J 5 HOH B 1 601 7 HOH HOH . J 5 HOH B 2 602 8 HOH HOH . J 5 HOH B 3 603 30 HOH HOH . J 5 HOH B 4 604 25 HOH HOH . J 5 HOH B 5 605 9 HOH HOH . J 5 HOH B 6 606 22 HOH HOH . J 5 HOH B 7 607 2 HOH HOH . J 5 HOH B 8 608 26 HOH HOH . J 5 HOH B 9 609 13 HOH HOH . J 5 HOH B 10 610 15 HOH HOH . J 5 HOH B 11 611 14 HOH HOH . J 5 HOH B 12 612 10 HOH HOH . J 5 HOH B 13 613 17 HOH HOH . J 5 HOH B 14 614 11 HOH HOH . J 5 HOH B 15 615 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . E 4 -14.046 2.292 -25.231 1 27.5 ? PG ANP 503 A 1 HETATM 2 O O1G ANP . . . E 4 -13.025 1.538 -24.439 1 36.81 ? O1G ANP 503 A 1 HETATM 3 O O2G ANP . . . E 4 -13.318 3.332 -26.167 1 27.46 ? O2G ANP 503 A 1 HETATM 4 O O3G ANP . . . E 4 -15.017 3.06 -24.246 1 33.85 ? O3G ANP 503 A 1 HETATM 5 P PB ANP . . . E 4 -13.946 0.446 -27.283 1 31.03 ? PB ANP 503 A 1 HETATM 6 O O1B ANP . . . E 4 -13.485 -0.861 -26.725 1 33.29 ? O1B ANP 503 A 1 HETATM 7 O O2B ANP . . . E 4 -14.73 0.198 -28.604 1 44.2 ? O2B ANP 503 A 1 HETATM 8 N N3B ANP . . . E 4 -14.945 1.211 -26.174 1 29.73 ? N3B ANP 503 A 1 HETATM 9 P PA ANP . . . E 4 -11.454 0.723 -28.321 1 27.86 ? PA ANP 503 A 1 HETATM 10 O O1A ANP . . . E 4 -10.391 0.365 -27.355 1 27.78 ? O1A ANP 503 A 1 HETATM 11 O O2A ANP . . . E 4 -11.016 1.736 -29.382 1 31.48 ? O2A ANP 503 A 1 HETATM 12 O O3A ANP . . . E 4 -12.708 1.346 -27.577 1 30.05 ? O3A ANP 503 A 1 HETATM 13 O O5' ANP . . . E 4 -11.981 -0.618 -28.974 1 32.75 ? O5' ANP 503 A 1 HETATM 14 C C5' ANP . . . E 4 -11.518 -1.055 -30.267 1 32.08 ? C5' ANP 503 A 1 HETATM 15 C C4' ANP . . . E 4 -12.275 -2.299 -30.66 1 34.58 ? C4' ANP 503 A 1 HETATM 16 O O4' ANP . . . E 4 -11.344 -3.314 -31.095 1 33.57 ? O4' ANP 503 A 1 HETATM 17 C C3' ANP . . . E 4 -13.095 -2.942 -29.545 1 36 ? C3' ANP 503 A 1 HETATM 18 O O3' ANP . . . E 4 -14.415 -2.411 -29.51 1 37.69 ? O3' ANP 503 A 1 HETATM 19 C C2' ANP . . . E 4 -13.084 -4.418 -29.941 1 35.62 ? C2' ANP 503 A 1 HETATM 20 O O2' ANP . . . E 4 -14.059 -4.708 -30.936 1 38.04 ? O2' ANP 503 A 1 HETATM 21 C C1' ANP . . . E 4 -11.673 -4.562 -30.511 1 34.31 ? C1' ANP 503 A 1 HETATM 22 N N9 ANP . . . E 4 -10.659 -4.885 -29.513 1 35.25 ? N9 ANP 503 A 1 HETATM 23 C C8 ANP . . . E 4 -9.932 -4.003 -28.756 1 33.21 ? C8 ANP 503 A 1 HETATM 24 N N7 ANP . . . E 4 -9.086 -4.576 -27.934 1 33 ? N7 ANP 503 A 1 HETATM 25 C C5 ANP . . . E 4 -9.269 -5.931 -28.166 1 34.8 ? C5 ANP 503 A 1 HETATM 26 C C6 ANP . . . E 4 -8.669 -7.078 -27.61 1 37.08 ? C6 ANP 503 A 1 HETATM 27 N N6 ANP . . . E 4 -7.725 -7.039 -26.667 1 39.02 ? N6 ANP 503 A 1 HETATM 28 N N1 ANP . . . E 4 -9.081 -8.283 -28.064 1 38.02 ? N1 ANP 503 A 1 HETATM 29 C C2 ANP . . . E 4 -10.026 -8.327 -29.007 1 39.98 ? C2 ANP 503 A 1 HETATM 30 N N3 ANP . . . E 4 -10.662 -7.316 -29.604 1 38.18 ? N3 ANP 503 A 1 HETATM 31 C C4 ANP . . . E 4 -10.235 -6.136 -29.136 1 35.49 ? C4 ANP 503 A 1 # _model_server_stats.io_time_ms 113 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #