data_7K87 # _model_server_result.job_id Ck50IjDF8CELcRHt0j7ycw _model_server_result.datetime_utc '2024-11-16 07:54:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k87 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 7K87 # _exptl.entry_id 7K87 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 402.352 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(2,6-difluorophenyl)-5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-3,6-dihydropyrimidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7K87 _cell.length_a 89.502 _cell.length_b 89.502 _cell.length_c 132.791 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K87 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 89.502 89.502 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 89.502 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 89.502 0 5 'crystal symmetry operation' 5_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 89.502 0 0 6 'crystal symmetry operation' 6_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 89.502 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 89.502 89.502 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc2 A OE1 GLU 81 A GLU 80 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 D MN MN . A MN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc5 A OE2 GLU 120 A GLU 119 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 C MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc7 C MN MN . A MN 402 1_555 E O13 W5V . A W5V 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc8 C MN MN . A MN 402 1_555 E O15 W5V . A W5V 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.865 ? metalc ? metalc9 D MN MN . A MN 403 1_555 E O13 W5V . A W5V 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc10 D MN MN . A MN 403 1_555 F O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? # _chem_comp.formula 'C19 H16 F2 N4 O4' _chem_comp.formula_weight 402.352 _chem_comp.id W5V _chem_comp.mon_nstd_flag . _chem_comp.name 2-(2,6-difluorophenyl)-5-hydroxy-N-[2-(2-methoxypyridin-4-yl)ethyl]-6-oxo-3,6-dihydropyrimidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 N29 W5V doub 485 n y C28 C27 W5V sing 486 n y N29 C03 W5V sing 487 n y C27 C05 W5V doub 488 n y C01 O02 W5V sing 489 n n C03 O02 W5V sing 490 n n C03 C04 W5V doub 491 n y C05 C04 W5V sing 492 n y C05 C06 W5V sing 493 n n C06 C07 W5V sing 494 n n C24 C23 W5V doub 495 n y C24 C25 W5V sing 496 n y C23 C22 W5V sing 497 n y C07 N08 W5V sing 498 n n F26 C25 W5V sing 499 n n C25 C19 W5V doub 500 n y C22 C20 W5V doub 501 n y N08 C09 W5V sing 502 n n C19 C20 W5V sing 503 n y C19 C17 W5V sing 504 n n C20 F21 W5V sing 505 n n N18 C17 W5V sing 506 n n N18 C11 W5V sing 507 n n C17 N16 W5V doub 508 n n C09 C11 W5V sing 509 n n C09 O10 W5V doub 510 n n C11 C12 W5V doub 511 n n N16 C14 W5V sing 512 n n C12 C14 W5V sing 513 n n C12 O13 W5V sing 514 n n C14 O15 W5V doub 515 n n C01 H1 W5V sing 516 n n C01 H2 W5V sing 517 n n C01 H3 W5V sing 518 n n C04 H4 W5V sing 519 n n C06 H5 W5V sing 520 n n C06 H6 W5V sing 521 n n C07 H7 W5V sing 522 n n C07 H8 W5V sing 523 n n C22 H9 W5V sing 524 n n C23 H10 W5V sing 525 n n C24 H11 W5V sing 526 n n C27 H12 W5V sing 527 n n C28 H13 W5V sing 528 n n N08 H14 W5V sing 529 n n N18 H15 W5V sing 530 n n O13 H16 W5V sing 531 n n # _atom_sites.entry_id 7K87 _atom_sites.fract_transf_matrix[1][1] 0.011173 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011173 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007531 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 QQ4 A 1 401 401 QQ4 PVP . C 3 MN A 1 402 201 MN MN . D 3 MN A 1 403 202 MN MN . E 4 W5V A 1 404 301 W5V 569 . F 5 HOH A 1 501 2 HOH HOH . F 5 HOH A 2 502 7 HOH HOH . F 5 HOH A 3 503 12 HOH HOH . F 5 HOH A 4 504 1 HOH HOH . F 5 HOH A 5 505 4 HOH HOH . F 5 HOH A 6 506 27 HOH HOH . F 5 HOH A 7 507 28 HOH HOH . F 5 HOH A 8 508 53 HOH HOH . F 5 HOH A 9 509 8 HOH HOH . F 5 HOH A 10 510 38 HOH HOH . F 5 HOH A 11 511 10 HOH HOH . F 5 HOH A 12 512 21 HOH HOH . F 5 HOH A 13 513 31 HOH HOH . F 5 HOH A 14 514 13 HOH HOH . F 5 HOH A 15 515 30 HOH HOH . F 5 HOH A 16 516 45 HOH HOH . F 5 HOH A 17 517 33 HOH HOH . F 5 HOH A 18 518 9 HOH HOH . F 5 HOH A 19 519 24 HOH HOH . F 5 HOH A 20 520 29 HOH HOH . F 5 HOH A 21 521 19 HOH HOH . F 5 HOH A 22 522 3 HOH HOH . F 5 HOH A 23 523 51 HOH HOH . F 5 HOH A 24 524 5 HOH HOH . F 5 HOH A 25 525 6 HOH HOH . F 5 HOH A 26 526 15 HOH HOH . F 5 HOH A 27 527 37 HOH HOH . F 5 HOH A 28 528 40 HOH HOH . F 5 HOH A 29 529 39 HOH HOH . F 5 HOH A 30 530 54 HOH HOH . F 5 HOH A 31 531 52 HOH HOH . F 5 HOH A 32 532 41 HOH HOH . F 5 HOH A 33 533 22 HOH HOH . F 5 HOH A 34 534 18 HOH HOH . F 5 HOH A 35 535 20 HOH HOH . F 5 HOH A 36 536 35 HOH HOH . F 5 HOH A 37 537 44 HOH HOH . F 5 HOH A 38 538 46 HOH HOH . F 5 HOH A 39 539 34 HOH HOH . F 5 HOH A 40 540 47 HOH HOH . F 5 HOH A 41 541 14 HOH HOH . F 5 HOH A 42 542 17 HOH HOH . F 5 HOH A 43 543 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 W5V . . . E 4 40.839 15.029 16.577 1 69.58 ? C11 W5V 404 A 1 HETATM 2 C C12 W5V . . . E 4 40.414 15.703 17.84 1 63.65 ? C12 W5V 404 A 1 HETATM 3 C C14 W5V . . . E 4 38.975 15.716 18.238 1 62.29 ? C14 W5V 404 A 1 HETATM 4 C C17 W5V . . . E 4 38.39 14.414 16.147 1 72.73 ? C17 W5V 404 A 1 HETATM 5 C C19 W5V . . . E 4 37.318 13.748 15.286 1 85.75 ? C19 W5V 404 A 1 HETATM 6 C C20 W5V . . . E 4 37.163 12.374 15.329 1 92.66 ? C20 W5V 404 A 1 HETATM 7 C C01 W5V . . . E 4 38.33 9.92 11.014 1 99.32 ? C01 W5V 404 A 1 HETATM 8 C C03 W5V . . . E 4 40.038 11.522 11.259 1 99.57 ? C03 W5V 404 A 1 HETATM 9 C C04 W5V . . . E 4 40.92 12.172 12.103 1 97.53 ? C04 W5V 404 A 1 HETATM 10 C C05 W5V . . . E 4 41.443 13.407 11.744 1 98.39 ? C05 W5V 404 A 1 HETATM 11 C C06 W5V . . . E 4 42.409 14.124 12.684 1 92.81 ? C06 W5V 404 A 1 HETATM 12 C C07 W5V . . . E 4 42.228 13.593 14.105 1 89.02 ? C07 W5V 404 A 1 HETATM 13 C C09 W5V . . . E 4 42.337 15.053 16.228 1 69.14 ? C09 W5V 404 A 1 HETATM 14 C C22 W5V . . . E 4 36.188 11.765 14.553 1 102.29 ? C22 W5V 404 A 1 HETATM 15 C C23 W5V . . . E 4 35.369 12.534 13.742 1 93.79 ? C23 W5V 404 A 1 HETATM 16 C C24 W5V . . . E 4 35.522 13.911 13.703 1 81.72 ? C24 W5V 404 A 1 HETATM 17 C C25 W5V . . . E 4 36.496 14.519 14.478 1 82.5 ? C25 W5V 404 A 1 HETATM 18 C C27 W5V . . . E 4 41.051 13.955 10.53 1 90.68 ? C27 W5V 404 A 1 HETATM 19 C C28 W5V . . . E 4 40.164 13.24 9.736 1 88.88 ? C28 W5V 404 A 1 HETATM 20 F F21 W5V . . . E 4 37.973 11.62 16.131 1 87.27 ? F21 W5V 404 A 1 HETATM 21 F F26 W5V . . . E 4 36.649 15.878 14.442 1 71.74 ? F26 W5V 404 A 1 HETATM 22 N N08 W5V . . . E 4 42.951 14.386 15.083 1 73.53 ? N08 W5V 404 A 1 HETATM 23 N N16 W5V . . . E 4 37.977 15.08 17.405 1 66.38 ? N16 W5V 404 A 1 HETATM 24 N N18 W5V . . . E 4 39.825 14.395 15.745 1 74.31 ? N18 W5V 404 A 1 HETATM 25 N N29 W5V . . . E 4 39.688 12.066 10.108 1 97.69 ? N29 W5V 404 A 1 HETATM 26 O O02 W5V . . . E 4 39.528 10.275 11.644 1 101.2 ? O02 W5V 404 A 1 HETATM 27 O O10 W5V . . . E 4 43.054 15.66 16.945 1 70.33 ? O10 W5V 404 A 1 HETATM 28 O O13 W5V . . . E 4 41.368 16.321 18.658 1 68.81 ? O13 W5V 404 A 1 HETATM 29 O O15 W5V . . . E 4 38.639 16.246 19.234 1 60.74 ? O15 W5V 404 A 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 396 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 29 #