data_7K8R # _model_server_result.job_id KyqrbX-CMOGtzQ4lLBNCTw _model_server_result.datetime_utc '2025-01-05 00:52:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k8r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 7K8R # _exptl.entry_id 7K8R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7K8R _cell.length_a 102.258 _cell.length_b 102.258 _cell.length_c 53.325 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K8R _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall 'P 4w' _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf2 A SG CYS 146 H CYS 140 1_555 A SG CYS 202 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? disulf ? disulf4 B SG CYS 134 L CYS 134 1_555 B SG CYS 194 L CYS 194 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.042 ? disulf ? disulf5 B SG CYS 134 L CYS 134 1_555 B SG CYS 194 L CYS 194 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.065 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7K8R _atom_sites.fract_transf_matrix[1][1] 0.009779 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009779 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018753 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL H 1 401 401 GOL GOL . D 3 GOL L 1 301 301 GOL GOL . E 3 GOL L 1 302 301 GOL GOL . F 4 HOH H 1 501 25 HOH HOH . F 4 HOH H 2 502 1 HOH HOH . F 4 HOH H 3 503 15 HOH HOH . F 4 HOH H 4 504 23 HOH HOH . F 4 HOH H 5 505 7 HOH HOH . F 4 HOH H 6 506 9 HOH HOH . F 4 HOH H 7 507 17 HOH HOH . F 4 HOH H 8 508 6 HOH HOH . F 4 HOH H 9 509 22 HOH HOH . F 4 HOH H 10 510 28 HOH HOH . F 4 HOH H 11 511 30 HOH HOH . F 4 HOH H 12 512 13 HOH HOH . F 4 HOH H 13 513 21 HOH HOH . F 4 HOH H 14 514 31 HOH HOH . G 4 HOH L 1 401 5 HOH HOH . G 4 HOH L 2 402 10 HOH HOH . G 4 HOH L 3 403 16 HOH HOH . G 4 HOH L 4 404 27 HOH HOH . G 4 HOH L 5 405 3 HOH HOH . G 4 HOH L 6 406 4 HOH HOH . G 4 HOH L 7 407 8 HOH HOH . G 4 HOH L 8 408 24 HOH HOH . G 4 HOH L 9 409 11 HOH HOH . G 4 HOH L 10 410 14 HOH HOH . G 4 HOH L 11 411 12 HOH HOH . G 4 HOH L 12 412 18 HOH HOH . G 4 HOH L 13 413 20 HOH HOH . G 4 HOH L 14 414 19 HOH HOH . G 4 HOH L 15 415 26 HOH HOH . G 4 HOH L 16 416 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -8.868 33.874 -0.75 1 60.34 ? C1 GOL 301 L 1 HETATM 2 O O1 GOL . . . D 3 -8.807 35.235 -1.04 1 68.66 ? O1 GOL 301 L 1 HETATM 3 C C2 GOL . . . D 3 -7.395 33.441 -0.506 1 78.63 ? C2 GOL 301 L 1 HETATM 4 O O2 GOL . . . D 3 -6.484 34.512 -0.724 1 69.73 ? O2 GOL 301 L 1 HETATM 5 C C3 GOL . . . D 3 -7.393 32.923 0.979 1 61.84 ? C3 GOL 301 L 1 HETATM 6 O O3 GOL . . . D 3 -6.339 32.079 1.102 1 68.41 ? O3 GOL 301 L 1 HETATM 7 H H11 GOL . . . D 3 -9.403 33.678 0.035 1 72.44 ? H11 GOL 301 L 1 HETATM 8 H H12 GOL . . . D 3 -9.25 33.349 -1.47 1 72.44 ? H12 GOL 301 L 1 HETATM 9 H HO1 GOL . . . D 3 -9.437 35.603 -0.61 1 82.42 ? HO1 GOL 301 L 1 HETATM 10 H H2 GOL . . . D 3 -7.121 32.743 -1.12 1 94.39 ? H2 GOL 301 L 1 HETATM 11 H HO2 GOL . . . D 3 -6.787 35.2 -0.335 1 83.7 ? HO2 GOL 301 L 1 HETATM 12 H H31 GOL . . . D 3 -7.347 33.685 1.578 1 74.24 ? H31 GOL 301 L 1 HETATM 13 H H32 GOL . . . D 3 -8.247 32.501 1.166 1 74.24 ? H32 GOL 301 L 1 HETATM 14 H HO3 GOL . . . D 3 -5.641 32.576 1.093 1 82.12 ? HO3 GOL 301 L 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 14 #