data_7K93 # _model_server_result.job_id owEw45pGHXZTr8yx6pOp0A _model_server_result.datetime_utc '2024-11-20 17:37:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7k93 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":401}' # _entry.id 7K93 # _exptl.entry_id 7K93 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7K93 _cell.length_a 69.627 _cell.length_b 165.593 _cell.length_c 258.589 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7K93 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 4 1_555 A SG CYS 39 A CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf2 A SG CYS 79 A CYS 55 1_555 A SG CYS 167 A CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 A SG CYS 203 A CYS 179 1_555 A SG CYS 247 A CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf4 A SG CYS 304 A CYS 280 1_555 A SG CYS 353 A CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf5 A SG CYS 315 A CYS 291 1_555 A SG CYS 336 A CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf6 A SG CYS 337 A CYS 313 1_555 A SG CYS 340 A CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf7 B SG CYS 28 B CYS 4 1_555 B SG CYS 39 B CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf8 B SG CYS 79 B CYS 55 1_555 B SG CYS 167 B CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf9 B SG CYS 203 B CYS 179 1_555 B SG CYS 247 B CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf10 B SG CYS 304 B CYS 280 1_555 B SG CYS 353 B CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf11 B SG CYS 315 B CYS 291 1_555 B SG CYS 336 B CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf12 B SG CYS 337 B CYS 313 1_555 B SG CYS 340 B CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf13 C SG CYS 28 C CYS 4 1_555 C SG CYS 39 C CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf14 C SG CYS 79 C CYS 55 1_555 C SG CYS 167 C CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf15 C SG CYS 203 C CYS 179 1_555 C SG CYS 247 C CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf16 C SG CYS 304 C CYS 280 1_555 C SG CYS 353 C CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf17 C SG CYS 315 C CYS 291 1_555 C SG CYS 336 C CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf18 C SG CYS 337 C CYS 313 1_555 C SG CYS 340 C CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf19 D SG CYS 28 D CYS 4 1_555 D SG CYS 39 D CYS 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf20 D SG CYS 79 D CYS 55 1_555 D SG CYS 167 D CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf21 D SG CYS 203 D CYS 179 1_555 D SG CYS 247 D CYS 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? disulf ? disulf22 D SG CYS 304 D CYS 280 1_555 D SG CYS 353 D CYS 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf23 D SG CYS 315 D CYS 291 1_555 D SG CYS 336 D CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf24 D SG CYS 337 D CYS 313 1_555 D SG CYS 340 D CYS 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf25 E SG CYS 25 E CYS 22 1_555 E SG CYS 99 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf26 E SG CYS 30 E CYS 27 1_555 E SG CYS 35 E CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf27 E SG CYS 163 E CYS 160 1_555 E SG CYS 232 E CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf28 F SG CYS 25 G CYS 22 1_555 F SG CYS 99 G CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf29 F SG CYS 30 G CYS 27 1_555 F SG CYS 35 G CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf30 F SG CYS 163 G CYS 160 1_555 F SG CYS 232 G CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? disulf ? disulf31 G SG CYS 25 I CYS 22 1_555 G SG CYS 99 I CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? disulf ? disulf32 G SG CYS 30 I CYS 27 1_555 G SG CYS 35 I CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf33 G SG CYS 163 I CYS 160 1_555 G SG CYS 232 I CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf34 H SG CYS 25 K CYS 22 1_555 H SG CYS 99 K CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf35 H SG CYS 30 K CYS 27 1_555 H SG CYS 35 K CYS 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf36 H SG CYS 163 K CYS 160 1_555 H SG CYS 232 K CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? covale ? covale1 A ND2 ASN 231 A ASN 207 1_555 I C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale2 B ND2 ASN 231 B ASN 207 1_555 J C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale3 C ND2 ASN 231 C ASN 207 1_555 K C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale4 D ND2 ASN 231 D ASN 207 1_555 L C1 NAG . D NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7K93 _atom_sites.fract_transf_matrix[1][1] 0.014362 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006039 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003867 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 NAG A 1 401 401 NAG NAG . J 3 NAG B 1 401 401 NAG NAG . K 3 NAG C 1 401 401 NAG NAG . L 3 NAG D 1 401 401 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . K 3 -18.626 -11.268 17.441 1 89.1 ? C1 NAG 401 C 1 HETATM 2 C C2 NAG . . . K 3 -17.968 -10.285 16.455 1 89.1 ? C2 NAG 401 C 1 HETATM 3 C C3 NAG . . . K 3 -19.01 -9.337 15.85 1 89.1 ? C3 NAG 401 C 1 HETATM 4 C C4 NAG . . . K 3 -20.154 -10.111 15.208 1 89.1 ? C4 NAG 401 C 1 HETATM 5 C C5 NAG . . . K 3 -20.76 -11.09 16.215 1 89.1 ? C5 NAG 401 C 1 HETATM 6 C C6 NAG . . . K 3 -21.83 -11.964 15.596 1 89.1 ? C6 NAG 401 C 1 HETATM 7 C C7 NAG . . . K 3 -15.619 -9.714 16.909 1 89.1 ? C7 NAG 401 C 1 HETATM 8 C C8 NAG . . . K 3 -15.252 -10.825 15.96 1 89.1 ? C8 NAG 401 C 1 HETATM 9 N N2 NAG . . . K 3 -16.923 -9.519 17.111 1 89.1 ? N2 NAG 401 C 1 HETATM 10 O O3 NAG . . . K 3 -18.391 -8.467 14.903 1 89.1 ? O3 NAG 401 C 1 HETATM 11 O O4 NAG . . . K 3 -21.17 -9.2 14.794 1 89.1 ? O4 NAG 401 C 1 HETATM 12 O O5 NAG . . . K 3 -19.753 -11.957 16.779 1 89.1 ? O5 NAG 401 C 1 HETATM 13 O O6 NAG . . . K 3 -22.971 -11.192 15.235 1 89.1 ? O6 NAG 401 C 1 HETATM 14 O O7 NAG . . . K 3 -14.771 -9.026 17.47 1 89.1 ? O7 NAG 401 C 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 42 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #