data_7KAC
#
_model_server_result.job_id            hnb0oMwp7D8q-H-ViGaExQ 
_model_server_result.datetime_utc      '2024-11-01 05:26:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kac 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    7KAC 
#
_exptl.entry_id    7KAC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              458.469 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-{[4-{[(1S)-2-hydroxy-1-phenylethyl]amino}-5-(1,3,4-oxadiazol-2-yl)pyrimidin-2-yl]amino}-3,3-dimethyl-2-benzofuran-1(3H)-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         78.81 
_cell.angle_beta          79.82 
_cell.angle_gamma         66.08 
_cell.entry_id            7KAC 
_cell.length_a            55.83 
_cell.length_b            58.47 
_cell.length_c            60.48 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KAC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C24 H22 N6 O4' 
_chem_comp.formula_weight    458.469 
_chem_comp.id                W9D 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-{[4-{[(1S)-2-hydroxy-1-phenylethyl]amino}-5-(1,3,4-oxadiazol-2-yl)pyrimidin-2-yl]amino}-3,3-dimethyl-2-benzofuran-1(3H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O30 C27 W9D doub 376 n n 
C27 O26 W9D sing 377 n n 
C27 C17 W9D sing 378 n n 
O26 C25 W9D sing 379 n n 
C17 C18 W9D doub 380 n y 
C17 C16 W9D sing 381 n y 
C18 C19 W9D sing 382 n y 
C28 C25 W9D sing 383 n n 
C25 C16 W9D sing 384 n n 
C25 C29 W9D sing 385 n n 
C16 C15 W9D doub 386 n y 
C19 C14 W9D doub 387 n y 
C15 C14 W9D sing 388 n y 
C14 N9 W9D sing 389 n n 
N9 C4 W9D sing 390 n n 
C21 C20 W9D doub 391 n y 
C21 C22 W9D sing 392 n y 
C20 C12 W9D sing 393 n y 
C22 C23 W9D doub 394 n y 
C4 N5 W9D doub 395 n y 
C4 N3 W9D sing 396 n y 
N5 C6 W9D sing 397 n y 
C12 C10 W9D sing 398 n n 
C12 C24 W9D doub 399 n y 
C23 C24 W9D sing 400 n y 
C10 C11 W9D sing 401 n n 
C10 N8 W9D sing 402 n n 
N3 C2 W9D doub 403 n y 
C11 O13 W9D sing 404 n n 
C6 N8 W9D sing 405 n n 
C6 C1 W9D doub 406 n y 
C2 C1 W9D sing 407 n y 
C1 C7 W9D sing 408 n n 
C7 O31 W9D sing 409 n y 
C7 N34 W9D doub 410 n y 
O31 C32 W9D sing 411 n y 
N34 N33 W9D sing 412 n y 
C32 N33 W9D doub 413 n y 
C18 H43 W9D sing 414 n n 
C15 H42 W9D sing 415 n n 
C19 H44 W9D sing 416 n n 
C20 H45 W9D sing 417 n n 
C21 H46 W9D sing 418 n n 
C22 H47 W9D sing 419 n n 
C23 H48 W9D sing 420 n n 
C24 H49 W9D sing 421 n n 
C11 H39 W9D sing 422 n n 
C11 H40 W9D sing 423 n n 
C2 H35 W9D sing 424 n n 
N8 H36 W9D sing 425 n n 
N9 H37 W9D sing 426 n n 
C10 H38 W9D sing 427 n n 
O13 H41 W9D sing 428 n n 
C28 H52 W9D sing 429 n n 
C28 H50 W9D sing 430 n n 
C28 H51 W9D sing 431 n n 
C29 H53 W9D sing 432 n n 
C29 H54 W9D sing 433 n n 
C29 H55 W9D sing 434 n n 
C32 H56 W9D sing 435 n n 
#
_atom_sites.entry_id                     7KAC 
_atom_sites.fract_transf_matrix[1][1]    0.017912 
_atom_sites.fract_transf_matrix[1][2]    -0.007945 
_atom_sites.fract_transf_matrix[1][3]    -0.002156 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01871 
_atom_sites.fract_transf_matrix[2][3]    -0.002569 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016956 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 W9D A 1 401 401 W9D LG1 . 
D 2 W9D B 1 401 401 W9D LG1 . 
E 3 HOH A 1 501 8 HOH HOH . 
E 3 HOH A 2 502 25 HOH HOH . 
E 3 HOH A 3 503 14 HOH HOH . 
E 3 HOH A 4 504 22 HOH HOH . 
E 3 HOH A 5 505 1 HOH HOH . 
E 3 HOH A 6 506 13 HOH HOH . 
E 3 HOH A 7 507 10 HOH HOH . 
E 3 HOH A 8 508 18 HOH HOH . 
E 3 HOH A 9 509 3 HOH HOH . 
E 3 HOH A 10 510 23 HOH HOH . 
E 3 HOH A 11 511 28 HOH HOH . 
E 3 HOH A 12 512 9 HOH HOH . 
E 3 HOH A 13 513 27 HOH HOH . 
E 3 HOH A 14 514 6 HOH HOH . 
E 3 HOH A 15 515 15 HOH HOH . 
F 3 HOH B 1 501 19 HOH HOH . 
F 3 HOH B 2 502 11 HOH HOH . 
F 3 HOH B 3 503 21 HOH HOH . 
F 3 HOH B 4 504 30 HOH HOH . 
F 3 HOH B 5 505 16 HOH HOH . 
F 3 HOH B 6 506 2 HOH HOH . 
F 3 HOH B 7 507 24 HOH HOH . 
F 3 HOH B 8 508 17 HOH HOH . 
F 3 HOH B 9 509 12 HOH HOH . 
F 3 HOH B 10 510 20 HOH HOH . 
F 3 HOH B 11 511 4 HOH HOH . 
F 3 HOH B 12 512 31 HOH HOH . 
F 3 HOH B 13 513 29 HOH HOH . 
F 3 HOH B 14 514 5 HOH HOH . 
F 3 HOH B 15 515 7 HOH HOH . 
F 3 HOH B 16 516 26 HOH HOH . 
F 3 HOH B 17 517 32 HOH HOH . 
F 3 HOH B 18 518 33 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C18 W9D . . . D 2 3.911 -56.286 -40.496 1 40.2 ? C18 W9D 401 B 1 
HETATM 2 C C17 W9D . . . D 2 4.975 -57.183 -40.553 1 40.19 ? C17 W9D 401 B 1 
HETATM 3 C C16 W9D . . . D 2 5.407 -57.67 -41.768 1 40.43 ? C16 W9D 401 B 1 
HETATM 4 C C15 W9D . . . D 2 4.792 -57.278 -42.949 1 40.37 ? C15 W9D 401 B 1 
HETATM 5 C C19 W9D . . . D 2 3.301 -55.874 -41.672 1 40 ? C19 W9D 401 B 1 
HETATM 6 C C20 W9D . . . D 2 8.254 -59.25 -45.658 1 46.3 ? C20 W9D 401 B 1 
HETATM 7 C C21 W9D . . . D 2 8.341 -60.634 -45.678 1 46.37 ? C21 W9D 401 B 1 
HETATM 8 C C22 W9D . . . D 2 7.51 -61.372 -46.497 1 46.09 ? C22 W9D 401 B 1 
HETATM 9 C C23 W9D . . . D 2 6.59 -60.726 -47.292 1 46.36 ? C23 W9D 401 B 1 
HETATM 10 C C24 W9D . . . D 2 6.503 -59.346 -47.276 1 46.38 ? C24 W9D 401 B 1 
HETATM 11 C C11 W9D . . . D 2 8.665 -56.536 -46.98 1 45.8 ? C11 W9D 401 B 1 
HETATM 12 C C12 W9D . . . D 2 7.341 -58.587 -46.466 1 46.03 ? C12 W9D 401 B 1 
HETATM 13 C C27 W9D . . . D 2 5.821 -57.765 -39.496 1 40.55 ? C27 W9D 401 B 1 
HETATM 14 C C1 W9D . . . D 2 4.06 -55.782 -48.013 1 44.82 ? C1 W9D 401 B 1 
HETATM 15 C C2 W9D . . . D 2 2.828 -55.391 -47.498 1 43.64 ? C2 W9D 401 B 1 
HETATM 16 N N3 W9D . . . D 2 2.52 -55.384 -46.203 1 43.24 ? N3 W9D 401 B 1 
HETATM 17 C C4 W9D . . . D 2 3.471 -55.845 -45.381 1 42.79 ? C4 W9D 401 B 1 
HETATM 18 N N5 W9D . . . D 2 4.695 -56.254 -45.739 1 43.79 ? N5 W9D 401 B 1 
HETATM 19 C C6 W9D . . . D 2 5.024 -56.211 -47.047 1 44.71 ? C6 W9D 401 B 1 
HETATM 20 C C7 W9D . . . D 2 4.289 -55.689 -49.46 1 46.04 ? C7 W9D 401 B 1 
HETATM 21 N N8 W9D . . . D 2 6.282 -56.55 -47.4 1 44.92 ? N8 W9D 401 B 1 
HETATM 22 N N9 W9D . . . D 2 3.092 -55.917 -44.067 1 41.54 ? N9 W9D 401 B 1 
HETATM 23 C C10 W9D . . . D 2 7.312 -57.072 -46.517 1 45.47 ? C10 W9D 401 B 1 
HETATM 24 O O13 W9D . . . D 2 8.96 -56.983 -48.302 1 45.91 ? O13 W9D 401 B 1 
HETATM 25 C C14 W9D . . . D 2 3.739 -56.365 -42.903 1 40.45 ? C14 W9D 401 B 1 
HETATM 26 C C25 W9D . . . D 2 6.593 -58.583 -41.556 1 40.75 ? C25 W9D 401 B 1 
HETATM 27 O O26 W9D . . . D 2 6.728 -58.609 -40.087 1 40.82 ? O26 W9D 401 B 1 
HETATM 28 C C28 W9D . . . D 2 6.334 -60.005 -42.021 1 40.54 ? C28 W9D 401 B 1 
HETATM 29 C C29 W9D . . . D 2 7.887 -58.02 -42.129 1 40.82 ? C29 W9D 401 B 1 
HETATM 30 O O30 W9D . . . D 2 5.873 -57.515 -38.314 1 40.5 ? O30 W9D 401 B 1 
HETATM 31 O O31 W9D . . . D 2 5.448 -56.199 -49.971 1 46.71 ? O31 W9D 401 B 1 
HETATM 32 C C32 W9D . . . D 2 5.403 -55.878 -51.289 1 46.97 ? C32 W9D 401 B 1 
HETATM 33 N N33 W9D . . . D 2 4.258 -55.218 -51.552 1 46.92 ? N33 W9D 401 B 1 
HETATM 34 N N34 W9D . . . D 2 3.558 -55.112 -50.352 1 46.51 ? N34 W9D 401 B 1 
HETATM 35 H H43 W9D . . . D 2 3.568 -55.928 -39.528 0 48.25 ? H43 W9D 401 B 1 
HETATM 36 H H42 W9D . . . D 2 5.159 -57.687 -43.889 0 48.45 ? H42 W9D 401 B 1 
HETATM 37 H H44 W9D . . . D 2 2.48 -55.16 -41.59 0 48 ? H44 W9D 401 B 1 
HETATM 38 H H45 W9D . . . D 2 8.912 -58.675 -45 0 55.56 ? H45 W9D 401 B 1 
HETATM 39 H H46 W9D . . . D 2 9.066 -61.143 -45.05 0 55.65 ? H46 W9D 401 B 1 
HETATM 40 H H47 W9D . . . D 2 7.576 -62.462 -46.514 0 55.31 ? H47 W9D 401 B 1 
HETATM 41 H H48 W9D . . . D 2 5.899 -61.289 -47.932 0 55.63 ? H48 W9D 401 B 1 
HETATM 42 H H49 W9D . . . D 2 5.754 -58.892 -47.91 0 55.66 ? H49 W9D 401 B 1 
HETATM 43 H H39 W9D . . . D 2 9.461 -56.748 -46.265 0 54.96 ? H39 W9D 401 B 1 
HETATM 44 H H40 W9D . . . D 2 8.613 -55.453 -47.069 0 54.96 ? H40 W9D 401 B 1 
HETATM 45 H H35 W9D . . . D 2 2.015 -55.064 -48.136 0 52.37 ? H35 W9D 401 B 1 
HETATM 46 H H36 W9D . . . D 2 6.574 -56.44 -48.367 0 53.91 ? H36 W9D 401 B 1 
HETATM 47 H H37 W9D . . . D 2 2.145 -55.6 -43.859 0 49.85 ? H37 W9D 401 B 1 
HETATM 48 H H38 W9D . . . D 2 7.17 -56.698 -45.503 0 54.56 ? H38 W9D 401 B 1 
HETATM 49 H H41 W9D . . . D 2 9.795 -56.515 -48.582 0 55.09 ? H41 W9D 401 B 1 
HETATM 50 H H52 W9D . . . D 2 5.33 -60.354 -41.76 0 48.65 ? H52 W9D 401 B 1 
HETATM 51 H H50 W9D . . . D 2 7.061 -60.703 -41.603 0 48.65 ? H50 W9D 401 B 1 
HETATM 52 H H51 W9D . . . D 2 6.416 -60.054 -43.108 0 48.65 ? H51 W9D 401 B 1 
HETATM 53 H H53 W9D . . . D 2 8.749 -58.63 -41.864 0 48.99 ? H53 W9D 401 B 1 
HETATM 54 H H54 W9D . . . D 2 8.09 -57.011 -41.77 0 48.99 ? H54 W9D 401 B 1 
HETATM 55 H H55 W9D . . . D 2 7.849 -57.97 -43.22 0 48.99 ? H55 W9D 401 B 1 
HETATM 56 H H56 W9D . . . D 2 6.238 -56.16 -51.932 0 56.37 ? H56 W9D 401 B 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           56 
#