data_7KAF # _model_server_result.job_id 7GNMAnisagBbbWpF_ThJEQ _model_server_result.datetime_utc '2024-11-28 17:03:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kaf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7KAF # _exptl.entry_id 7KAF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 483.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Baloxavir acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KAF _cell.length_a 89.824 _cell.length_b 89.824 _cell.length_c 133.773 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KAF _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc2 A OE2 GLU 81 A GLU 80 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc5 A OE2 GLU 120 A GLU 119 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc7 B O1 E4Z . A E4Z 201 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc8 B O2 E4Z . A E4Z 201 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc9 B O2 E4Z . A E4Z 201 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc10 B O3 E4Z . A E4Z 201 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc11 E MN MN . A MN 204 1_555 H O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc12 E MN MN . A MN 204 1_555 H O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? # _chem_comp.formula 'C24 H19 F2 N3 O4 S' _chem_comp.formula_weight 483.487 _chem_comp.id E4Z _chem_comp.mon_nstd_flag . _chem_comp.name 'Baloxavir acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 O4 E4Z sing 83 n n C9 C10 E4Z sing 84 n n O4 C8 E4Z sing 85 n n C10 N3 E4Z sing 86 n n C8 C7 E4Z sing 87 n n O3 C6 E4Z doub 88 n n N3 C6 E4Z sing 89 n n N3 C7 E4Z sing 90 n n C6 C4 E4Z sing 91 n n C7 N2 E4Z sing 92 n n O2 C5 E4Z sing 93 n n C4 C5 E4Z doub 94 n n C4 N1 E4Z sing 95 n n C5 C1 E4Z sing 96 n n N2 N1 E4Z sing 97 n n N2 C11 E4Z sing 98 n n N1 C3 E4Z sing 99 n n C1 O1 E4Z doub 100 n n C1 C2 E4Z sing 101 n n C3 C2 E4Z doub 102 n n C11 C12 E4Z sing 103 n n C11 C16 E4Z sing 104 n n C21 C22 E4Z doub 105 n y C21 C12 E4Z sing 106 n y C22 C23 E4Z sing 107 n y C12 C13 E4Z doub 108 n y C23 F2 E4Z sing 109 n n C23 C24 E4Z doub 110 n y C13 C24 E4Z sing 111 n y C13 C14 E4Z sing 112 n n C24 F1 E4Z sing 113 n n C14 S3 E4Z sing 114 n n C16 C20 E4Z doub 115 n y C16 C15 E4Z sing 116 n y C20 C19 E4Z sing 117 n y S3 C15 E4Z sing 118 n n C15 C17 E4Z doub 119 n y C19 C18 E4Z doub 120 n y C17 C18 E4Z sing 121 n y C2 H1 E4Z sing 122 n n C7 H3 E4Z sing 123 n n C14 H4 E4Z sing 124 n n C14 H5 E4Z sing 125 n n C17 H6 E4Z sing 126 n n C18 H7 E4Z sing 127 n n C19 H8 E4Z sing 128 n n C20 H9 E4Z sing 129 n n C21 H10 E4Z sing 130 n n C22 H11 E4Z sing 131 n n C11 H12 E4Z sing 132 n n C8 H13 E4Z sing 133 n n C8 H14 E4Z sing 134 n n C9 H15 E4Z sing 135 n n C9 H16 E4Z sing 136 n n C10 H17 E4Z sing 137 n n C10 H18 E4Z sing 138 n n C3 H19 E4Z sing 139 n n O2 H20 E4Z sing 140 n n # _atom_sites.entry_id 7KAF _atom_sites.fract_transf_matrix[1][1] 0.011133 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011133 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 E4Z A 1 201 300 E4Z E4Z . C 3 QQ4 A 1 202 420 QQ4 PVP . D 4 MN A 1 203 301 MN MN . E 4 MN A 1 204 302 MN MN . F 5 SO4 A 1 205 1 SO4 SO4 . G 5 SO4 A 1 206 2 SO4 SO4 . H 6 HOH A 1 301 6 HOH HOH . H 6 HOH A 2 302 50 HOH HOH . H 6 HOH A 3 303 25 HOH HOH . H 6 HOH A 4 304 10 HOH HOH . H 6 HOH A 5 305 24 HOH HOH . H 6 HOH A 6 306 9 HOH HOH . H 6 HOH A 7 307 13 HOH HOH . H 6 HOH A 8 308 16 HOH HOH . H 6 HOH A 9 309 54 HOH HOH . H 6 HOH A 10 310 11 HOH HOH . H 6 HOH A 11 311 21 HOH HOH . H 6 HOH A 12 312 56 HOH HOH . H 6 HOH A 13 313 28 HOH HOH . H 6 HOH A 14 314 2 HOH HOH . H 6 HOH A 15 315 20 HOH HOH . H 6 HOH A 16 316 12 HOH HOH . H 6 HOH A 17 317 14 HOH HOH . H 6 HOH A 18 318 69 HOH HOH . H 6 HOH A 19 319 18 HOH HOH . H 6 HOH A 20 320 38 HOH HOH . H 6 HOH A 21 321 5 HOH HOH . H 6 HOH A 22 322 23 HOH HOH . H 6 HOH A 23 323 52 HOH HOH . H 6 HOH A 24 324 3 HOH HOH . H 6 HOH A 25 325 59 HOH HOH . H 6 HOH A 26 326 32 HOH HOH . H 6 HOH A 27 327 42 HOH HOH . H 6 HOH A 28 328 19 HOH HOH . H 6 HOH A 29 329 63 HOH HOH . H 6 HOH A 30 330 55 HOH HOH . H 6 HOH A 31 331 17 HOH HOH . H 6 HOH A 32 332 4 HOH HOH . H 6 HOH A 33 333 61 HOH HOH . H 6 HOH A 34 334 41 HOH HOH . H 6 HOH A 35 335 8 HOH HOH . H 6 HOH A 36 336 64 HOH HOH . H 6 HOH A 37 337 36 HOH HOH . H 6 HOH A 38 338 70 HOH HOH . H 6 HOH A 39 339 37 HOH HOH . H 6 HOH A 40 340 48 HOH HOH . H 6 HOH A 41 341 53 HOH HOH . H 6 HOH A 42 342 1 HOH HOH . H 6 HOH A 43 343 31 HOH HOH . H 6 HOH A 44 344 47 HOH HOH . H 6 HOH A 45 345 29 HOH HOH . H 6 HOH A 46 346 39 HOH HOH . H 6 HOH A 47 347 71 HOH HOH . H 6 HOH A 48 348 15 HOH HOH . H 6 HOH A 49 349 33 HOH HOH . H 6 HOH A 50 350 51 HOH HOH . H 6 HOH A 51 351 34 HOH HOH . H 6 HOH A 52 352 62 HOH HOH . H 6 HOH A 53 353 46 HOH HOH . H 6 HOH A 54 354 26 HOH HOH . H 6 HOH A 55 355 22 HOH HOH . H 6 HOH A 56 356 30 HOH HOH . H 6 HOH A 57 357 65 HOH HOH . H 6 HOH A 58 358 27 HOH HOH . H 6 HOH A 59 359 43 HOH HOH . H 6 HOH A 60 360 58 HOH HOH . H 6 HOH A 61 361 68 HOH HOH . H 6 HOH A 62 362 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 E4Z . . . B 2 29.479 -5.699 18.331 1 51.77 ? C1 E4Z 201 A 1 HETATM 2 N N1 E4Z . . . B 2 30.954 -5.006 15.925 1 41.26 ? N1 E4Z 201 A 1 HETATM 3 O O1 E4Z . . . B 2 28.876 -5.978 19.323 1 49.87 ? O1 E4Z 201 A 1 HETATM 4 C C2 E4Z . . . B 2 30.403 -6.675 17.772 1 53.15 ? C2 E4Z 201 A 1 HETATM 5 O O2 E4Z . . . B 2 28.407 -3.499 18.248 1 48.36 ? O2 E4Z 201 A 1 HETATM 6 O O3 E4Z . . . B 2 28.926 -2.121 16.465 1 54.38 ? O3 E4Z 201 A 1 HETATM 7 C C4 E4Z . . . B 2 29.946 -4.077 16.544 1 44.49 ? C4 E4Z 201 A 1 HETATM 8 O O4 E4Z . . . B 2 33.112 -1.31 15.082 1 50.06 ? O4 E4Z 201 A 1 HETATM 9 C C5 E4Z . . . B 2 29.302 -4.406 17.679 1 40.68 ? C5 E4Z 201 A 1 HETATM 10 C C6 E4Z . . . B 2 29.782 -2.853 16.056 1 51.15 ? C6 E4Z 201 A 1 HETATM 11 C C7 E4Z . . . B 2 31.805 -3.238 14.672 1 48.32 ? C7 E4Z 201 A 1 HETATM 12 C C13 E4Z . . . B 2 32.297 -5.378 11.873 1 60.53 ? C13 E4Z 201 A 1 HETATM 13 C C14 E4Z . . . B 2 33.282 -6.171 12.744 1 55.75 ? C14 E4Z 201 A 1 HETATM 14 C C15 E4Z . . . B 2 30.812 -7.528 13.762 1 50.2 ? C15 E4Z 201 A 1 HETATM 15 C C16 E4Z . . . B 2 30.09 -6.338 13.965 1 38.41 ? C16 E4Z 201 A 1 HETATM 16 C C17 E4Z . . . B 2 30.157 -8.752 13.977 1 39.42 ? C17 E4Z 201 A 1 HETATM 17 C C18 E4Z . . . B 2 28.829 -8.791 14.381 1 38.86 ? C18 E4Z 201 A 1 HETATM 18 C C19 E4Z . . . B 2 28.124 -7.596 14.586 1 39.79 ? C19 E4Z 201 A 1 HETATM 19 C C20 E4Z . . . B 2 28.768 -6.377 14.376 1 40.7 ? C20 E4Z 201 A 1 HETATM 20 C C21 E4Z . . . B 2 30.341 -4.117 11.323 1 62.01 ? C21 E4Z 201 A 1 HETATM 21 C C22 E4Z . . . B 2 30.761 -4.058 10.005 1 58.24 ? C22 E4Z 201 A 1 HETATM 22 C C23 E4Z . . . B 2 31.958 -4.667 9.62 1 71.25 ? C23 E4Z 201 A 1 HETATM 23 C C24 E4Z . . . B 2 32.744 -5.323 10.559 1 58.58 ? C24 E4Z 201 A 1 HETATM 24 F F2 E4Z . . . B 2 32.363 -4.596 8.292 1 68.4 ? F2 E4Z 201 A 1 HETATM 25 C C12 E4Z . . . B 2 31.118 -4.789 12.28 1 58.76 ? C12 E4Z 201 A 1 HETATM 26 F F1 E4Z . . . B 2 33.934 -5.913 10.136 1 71.41 ? F1 E4Z 201 A 1 HETATM 27 S S3 E4Z . . . B 2 32.542 -7.789 13.248 1 53.88 ? S3 E4Z 201 A 1 HETATM 28 C C11 E4Z . . . B 2 30.641 -4.838 13.824 1 49.54 ? C11 E4Z 201 A 1 HETATM 29 N N2 E4Z . . . B 2 31.533 -4.589 14.779 1 55.9 ? N2 E4Z 201 A 1 HETATM 30 C C8 E4Z . . . B 2 33.014 -2.656 15.491 1 43.72 ? C8 E4Z 201 A 1 HETATM 31 C C9 E4Z . . . B 2 31.982 -0.48 15.262 1 50.77 ? C9 E4Z 201 A 1 HETATM 32 C C10 E4Z . . . B 2 30.661 -1.021 14.661 1 57 ? C10 E4Z 201 A 1 HETATM 33 N N3 E4Z . . . B 2 30.67 -2.383 15.168 1 46.28 ? N3 E4Z 201 A 1 HETATM 34 C C3 E4Z . . . B 2 31.103 -6.371 16.668 1 39.14 ? C3 E4Z 201 A 1 HETATM 35 H H1 E4Z . . . B 2 30.508 -7.505 18.178 1 63.92 ? H1 E4Z 201 A 1 HETATM 36 H H3 E4Z . . . B 2 31.987 -3.197 13.752 1 58.13 ? H3 E4Z 201 A 1 HETATM 37 H H4 E4Z . . . B 2 34.07 -6.327 12.258 1 67.04 ? H4 E4Z 201 A 1 HETATM 38 H H5 E4Z . . . B 2 33.489 -5.672 13.512 1 67.04 ? H5 E4Z 201 A 1 HETATM 39 H H6 E4Z . . . B 2 30.619 -9.547 13.846 1 47.45 ? H6 E4Z 201 A 1 HETATM 40 H H7 E4Z . . . B 2 28.408 -9.608 14.517 1 46.78 ? H7 E4Z 201 A 1 HETATM 41 H H8 E4Z . . . B 2 27.236 -7.616 14.858 1 47.89 ? H8 E4Z 201 A 1 HETATM 42 H H9 E4Z . . . B 2 28.306 -5.584 14.513 1 48.98 ? H9 E4Z 201 A 1 HETATM 43 H H10 E4Z . . . B 2 29.544 -3.712 11.574 1 74.56 ? H10 E4Z 201 A 1 HETATM 44 H H11 E4Z . . . B 2 30.245 -3.611 9.374 1 70.03 ? H11 E4Z 201 A 1 HETATM 45 H H12 E4Z . . . B 2 30.031 -4.138 13.966 1 59.59 ? H12 E4Z 201 A 1 HETATM 46 H H13 E4Z . . . B 2 32.754 -2.648 16.393 1 52.6 ? H13 E4Z 201 A 1 HETATM 47 H H14 E4Z . . . B 2 33.787 -3.09 15.182 1 52.6 ? H14 E4Z 201 A 1 HETATM 48 H H15 E4Z . . . B 2 31.852 -0.361 16.184 1 61.06 ? H15 E4Z 201 A 1 HETATM 49 H H16 E4Z . . . B 2 32.164 0.349 14.862 1 61.06 ? H16 E4Z 201 A 1 HETATM 50 H H17 E4Z . . . B 2 30.678 -1.002 13.723 1 68.54 ? H17 E4Z 201 A 1 HETATM 51 H H18 E4Z . . . B 2 29.918 -0.541 14.976 1 68.54 ? H18 E4Z 201 A 1 HETATM 52 H H19 E4Z . . . B 2 31.7 -6.998 16.331 1 47.1 ? H19 E4Z 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 52 #