data_7KAF # _model_server_result.job_id 08vGS8hfFLa5-bgLGXMRtw _model_server_result.datetime_utc '2024-11-13 20:50:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kaf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 7KAF # _exptl.entry_id 7KAF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 668.866 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Hexa Vinylpyrrolidone K15' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KAF _cell.length_a 89.824 _cell.length_b 89.824 _cell.length_c 133.773 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KAF _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 5 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 6 'crystal symmetry operation' 6_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 7 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc2 A OE2 GLU 81 A GLU 80 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc5 A OE2 GLU 120 A GLU 119 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc6 A O ILE 121 A ILE 120 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc7 B O1 E4Z . A E4Z 201 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc8 B O2 E4Z . A E4Z 201 1_555 D MN MN . A MN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc9 B O2 E4Z . A E4Z 201 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc10 B O3 E4Z . A E4Z 201 1_555 E MN MN . A MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc11 E MN MN . A MN 204 1_555 H O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc12 E MN MN . A MN 204 1_555 H O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? # _chem_comp.formula 'C36 H56 N6 O6' _chem_comp.formula_weight 668.866 _chem_comp.id QQ4 _chem_comp.mon_nstd_flag . _chem_comp.name 'Hexa Vinylpyrrolidone K15' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "1,1',1'',1''',1'''',1'''''-[(3R,5R,7R,9S,11R)-dodecane-1,3,5,7,9,11-hexayl]hexa(pyrrolidin-2-one)" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C21 C20 QQ4 sing 335 n n C21 N02 QQ4 sing 336 n n C20 C19 QQ4 sing 337 n n C19 C42 QQ4 sing 338 n n N02 C12 QQ4 sing 339 n n N02 C42 QQ4 sing 340 n n C12 C11 QQ4 sing 341 n n C42 O05 QQ4 doub 342 n n C38 C41 QQ4 sing 343 n n C38 N07 QQ4 sing 344 n n C41 C40 QQ4 sing 345 n n C10 C09 QQ4 sing 346 n n C11 C01 QQ4 sing 347 n n C40 C39 QQ4 sing 348 n n N07 C09 QQ4 sing 349 n n N07 C39 QQ4 sing 350 n n C01 C02 QQ4 sing 351 n n C01 N03 QQ4 sing 352 n n C08 C09 QQ4 sing 353 n n C08 C07 QQ4 sing 354 n n C02 C03 QQ4 sing 355 n n C39 O07 QQ4 doub 356 n n C26 C27 QQ4 sing 357 n n C26 N04 QQ4 sing 358 n n C22 N03 QQ4 sing 359 n n C22 C25 QQ4 sing 360 n n N03 C23 QQ4 sing 361 n n C06 C07 QQ4 sing 362 n n C06 C05 QQ4 sing 363 n n C07 N06 QQ4 sing 364 n n C27 C28 QQ4 sing 365 n n C03 N04 QQ4 sing 366 n n C03 C04 QQ4 sing 367 n n C25 C24 QQ4 sing 368 n n N04 C29 QQ4 sing 369 n n C04 C05 QQ4 sing 370 n n O04 C30 QQ4 doub 371 n n C23 O02 QQ4 doub 372 n n C23 C24 QQ4 sing 373 n n C05 N05 QQ4 sing 374 n n N06 C34 QQ4 sing 375 n n N06 C37 QQ4 sing 376 n n C34 C35 QQ4 sing 377 n n C28 C29 QQ4 sing 378 n n C29 O03 QQ4 doub 379 n n C30 N05 QQ4 sing 380 n n C30 C31 QQ4 sing 381 n n N05 C33 QQ4 sing 382 n n C37 O06 QQ4 doub 383 n n C37 C36 QQ4 sing 384 n n C35 C36 QQ4 sing 385 n n C31 C32 QQ4 sing 386 n n C33 C32 QQ4 sing 387 n n C12 H1 QQ4 sing 388 n n C12 H2 QQ4 sing 389 n n C11 H3 QQ4 sing 390 n n C11 H4 QQ4 sing 391 n n C10 H5 QQ4 sing 392 n n C10 H6 QQ4 sing 393 n n C10 H7 QQ4 sing 394 n n C01 H8 QQ4 sing 395 n n C02 H9 QQ4 sing 396 n n C02 H10 QQ4 sing 397 n n C03 H11 QQ4 sing 398 n n C04 H12 QQ4 sing 399 n n C04 H13 QQ4 sing 400 n n C05 H14 QQ4 sing 401 n n C06 H15 QQ4 sing 402 n n C06 H16 QQ4 sing 403 n n C07 H17 QQ4 sing 404 n n C08 H18 QQ4 sing 405 n n C08 H19 QQ4 sing 406 n n C09 H20 QQ4 sing 407 n n C19 H21 QQ4 sing 408 n n C19 H22 QQ4 sing 409 n n C20 H23 QQ4 sing 410 n n C20 H24 QQ4 sing 411 n n C21 H25 QQ4 sing 412 n n C21 H26 QQ4 sing 413 n n C22 H27 QQ4 sing 414 n n C22 H28 QQ4 sing 415 n n C24 H29 QQ4 sing 416 n n C24 H30 QQ4 sing 417 n n C25 H31 QQ4 sing 418 n n C25 H32 QQ4 sing 419 n n C26 H33 QQ4 sing 420 n n C26 H34 QQ4 sing 421 n n C27 H35 QQ4 sing 422 n n C27 H36 QQ4 sing 423 n n C28 H37 QQ4 sing 424 n n C28 H38 QQ4 sing 425 n n C31 H39 QQ4 sing 426 n n C31 H40 QQ4 sing 427 n n C32 H41 QQ4 sing 428 n n C32 H42 QQ4 sing 429 n n C33 H43 QQ4 sing 430 n n C33 H44 QQ4 sing 431 n n C34 H45 QQ4 sing 432 n n C34 H46 QQ4 sing 433 n n C35 H47 QQ4 sing 434 n n C35 H48 QQ4 sing 435 n n C36 H49 QQ4 sing 436 n n C36 H50 QQ4 sing 437 n n C38 H51 QQ4 sing 438 n n C38 H52 QQ4 sing 439 n n C40 H53 QQ4 sing 440 n n C40 H54 QQ4 sing 441 n n C41 H55 QQ4 sing 442 n n C41 H56 QQ4 sing 443 n n # _atom_sites.entry_id 7KAF _atom_sites.fract_transf_matrix[1][1] 0.011133 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011133 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 E4Z A 1 201 300 E4Z E4Z . C 3 QQ4 A 1 202 420 QQ4 PVP . D 4 MN A 1 203 301 MN MN . E 4 MN A 1 204 302 MN MN . F 5 SO4 A 1 205 1 SO4 SO4 . G 5 SO4 A 1 206 2 SO4 SO4 . H 6 HOH A 1 301 6 HOH HOH . H 6 HOH A 2 302 50 HOH HOH . H 6 HOH A 3 303 25 HOH HOH . H 6 HOH A 4 304 10 HOH HOH . H 6 HOH A 5 305 24 HOH HOH . H 6 HOH A 6 306 9 HOH HOH . H 6 HOH A 7 307 13 HOH HOH . H 6 HOH A 8 308 16 HOH HOH . H 6 HOH A 9 309 54 HOH HOH . H 6 HOH A 10 310 11 HOH HOH . H 6 HOH A 11 311 21 HOH HOH . H 6 HOH A 12 312 56 HOH HOH . H 6 HOH A 13 313 28 HOH HOH . H 6 HOH A 14 314 2 HOH HOH . H 6 HOH A 15 315 20 HOH HOH . H 6 HOH A 16 316 12 HOH HOH . H 6 HOH A 17 317 14 HOH HOH . H 6 HOH A 18 318 69 HOH HOH . H 6 HOH A 19 319 18 HOH HOH . H 6 HOH A 20 320 38 HOH HOH . H 6 HOH A 21 321 5 HOH HOH . H 6 HOH A 22 322 23 HOH HOH . H 6 HOH A 23 323 52 HOH HOH . H 6 HOH A 24 324 3 HOH HOH . H 6 HOH A 25 325 59 HOH HOH . H 6 HOH A 26 326 32 HOH HOH . H 6 HOH A 27 327 42 HOH HOH . H 6 HOH A 28 328 19 HOH HOH . H 6 HOH A 29 329 63 HOH HOH . H 6 HOH A 30 330 55 HOH HOH . H 6 HOH A 31 331 17 HOH HOH . H 6 HOH A 32 332 4 HOH HOH . H 6 HOH A 33 333 61 HOH HOH . H 6 HOH A 34 334 41 HOH HOH . H 6 HOH A 35 335 8 HOH HOH . H 6 HOH A 36 336 64 HOH HOH . H 6 HOH A 37 337 36 HOH HOH . H 6 HOH A 38 338 70 HOH HOH . H 6 HOH A 39 339 37 HOH HOH . H 6 HOH A 40 340 48 HOH HOH . H 6 HOH A 41 341 53 HOH HOH . H 6 HOH A 42 342 1 HOH HOH . H 6 HOH A 43 343 31 HOH HOH . H 6 HOH A 44 344 47 HOH HOH . H 6 HOH A 45 345 29 HOH HOH . H 6 HOH A 46 346 39 HOH HOH . H 6 HOH A 47 347 71 HOH HOH . H 6 HOH A 48 348 15 HOH HOH . H 6 HOH A 49 349 33 HOH HOH . H 6 HOH A 50 350 51 HOH HOH . H 6 HOH A 51 351 34 HOH HOH . H 6 HOH A 52 352 62 HOH HOH . H 6 HOH A 53 353 46 HOH HOH . H 6 HOH A 54 354 26 HOH HOH . H 6 HOH A 55 355 22 HOH HOH . H 6 HOH A 56 356 30 HOH HOH . H 6 HOH A 57 357 65 HOH HOH . H 6 HOH A 58 358 27 HOH HOH . H 6 HOH A 59 359 43 HOH HOH . H 6 HOH A 60 360 58 HOH HOH . H 6 HOH A 61 361 68 HOH HOH . H 6 HOH A 62 362 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 QQ4 . . . C 3 13.915 2.54 11.216 1 99.66 ? C12 QQ4 202 A 1 HETATM 2 C C11 QQ4 . . . C 3 14.207 1.048 11.37 1 100.86 ? C11 QQ4 202 A 1 HETATM 3 C C01 QQ4 . . . C 3 14.85 0.762 12.724 1 98.49 ? C01 QQ4 202 A 1 HETATM 4 C C02 QQ4 . . . C 3 13.848 0.769 13.89 1 93.15 ? C02 QQ4 202 A 1 HETATM 5 C C03 QQ4 . . . C 3 12.551 -0.065 13.785 1 95.67 ? C03 QQ4 202 A 1 HETATM 6 C C04 QQ4 . . . C 3 12.741 -1.572 13.491 1 83.69 ? C04 QQ4 202 A 1 HETATM 7 C C05 QQ4 . . . C 3 11.95 -2.35 14.561 1 96.7 ? C05 QQ4 202 A 1 HETATM 8 C C06 QQ4 . . . C 3 10.434 -2.15 14.41 1 95.53 ? C06 QQ4 202 A 1 HETATM 9 C C07 QQ4 . . . C 3 9.963 -2.316 12.963 1 97.53 ? C07 QQ4 202 A 1 HETATM 10 C C08 QQ4 . . . C 3 8.694 -1.489 12.76 1 100.22 ? C08 QQ4 202 A 1 HETATM 11 C C19 QQ4 . . . C 3 16.084 4.809 9.036 1 104.25 ? C19 QQ4 202 A 1 HETATM 12 C C20 QQ4 . . . C 3 16.719 3.45 8.849 1 102.4 ? C20 QQ4 202 A 1 HETATM 13 C C21 QQ4 . . . C 3 15.653 2.452 9.279 1 89.27 ? C21 QQ4 202 A 1 HETATM 14 C C22 QQ4 . . . C 3 15.641 2.941 13.881 1 77.65 ? C22 QQ4 202 A 1 HETATM 15 C C23 QQ4 . . . C 3 17.198 1.868 12.445 1 86.05 ? C23 QQ4 202 A 1 HETATM 16 C C24 QQ4 . . . C 3 17.892 3.113 13.001 1 63.9 ? C24 QQ4 202 A 1 HETATM 17 C C25 QQ4 . . . C 3 17.017 3.528 14.17 1 73.46 ? C25 QQ4 202 A 1 HETATM 18 C C26 QQ4 . . . C 3 10.74 1.677 13.277 1 106.67 ? C26 QQ4 202 A 1 HETATM 19 C C27 QQ4 . . . C 3 10.197 2.278 11.979 1 113.06 ? C27 QQ4 202 A 1 HETATM 20 C C28 QQ4 . . . C 3 10.221 1.121 10.984 1 108.85 ? C28 QQ4 202 A 1 HETATM 21 C C29 QQ4 . . . C 3 11.297 0.193 11.52 1 112.86 ? C29 QQ4 202 A 1 HETATM 22 C C30 QQ4 . . . C 3 12.701 -4.672 13.548 1 84.46 ? C30 QQ4 202 A 1 HETATM 23 C C31 QQ4 . . . C 3 12.818 -6.076 14.116 1 81.56 ? C31 QQ4 202 A 1 HETATM 24 C C32 QQ4 . . . C 3 11.97 -6.048 15.358 1 70.28 ? C32 QQ4 202 A 1 HETATM 25 C C33 QQ4 . . . C 3 12.042 -4.602 15.832 1 81.94 ? C33 QQ4 202 A 1 HETATM 26 C C34 QQ4 . . . C 3 8.778 -4.614 13.436 1 101.27 ? C34 QQ4 202 A 1 HETATM 27 C C35 QQ4 . . . C 3 9.108 -6.024 12.929 1 89.36 ? C35 QQ4 202 A 1 HETATM 28 C C36 QQ4 . . . C 3 9.62 -5.843 11.54 1 86 ? C36 QQ4 202 A 1 HETATM 29 C C37 QQ4 . . . C 3 10.173 -4.448 11.5 1 100.07 ? C37 QQ4 202 A 1 HETATM 30 C C42 QQ4 . . . C 3 15.066 4.589 10.14 1 106.24 ? C42 QQ4 202 A 1 HETATM 31 N N02 QQ4 . . . C 3 14.829 3.154 10.266 1 96.03 ? N02 QQ4 202 A 1 HETATM 32 N N03 QQ4 . . . C 3 15.845 1.795 13 1 86.38 ? N03 QQ4 202 A 1 HETATM 33 N N04 QQ4 . . . C 3 11.589 0.561 12.889 1 111.27 ? N04 QQ4 202 A 1 HETATM 34 N N05 QQ4 . . . C 3 12.225 -3.786 14.619 1 96.09 ? N05 QQ4 202 A 1 HETATM 35 N N06 QQ4 . . . C 3 9.662 -3.703 12.655 1 105.87 ? N06 QQ4 202 A 1 HETATM 36 O O02 QQ4 . . . C 3 17.682 1.091 11.692 1 94.35 ? O02 QQ4 202 A 1 HETATM 37 O O03 QQ4 . . . C 3 11.818 -0.676 10.907 1 115.53 ? O03 QQ4 202 A 1 HETATM 38 O O04 QQ4 . . . C 3 12.954 -4.361 12.431 1 92.41 ? O04 QQ4 202 A 1 HETATM 39 O O05 QQ4 . . . C 3 14.553 5.434 10.793 1 102.79 ? O05 QQ4 202 A 1 HETATM 40 O O06 QQ4 . . . C 3 10.904 -4.017 10.671 1 100.52 ? O06 QQ4 202 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 40 #