data_7KAG # _model_server_result.job_id 3F75uK-fQMM_6AOAM5XqDQ _model_server_result.datetime_utc '2024-11-21 11:24:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kag # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":206}' # _entry.id 7KAG # _exptl.entry_id 7KAG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.896 _cell.angle_gamma 90 _cell.entry_id 7KAG _cell.length_a 81.83 _cell.length_b 147.57 _cell.length_c 70.137 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KAG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,I,J,K,L,M,N,O,P,R 1 1 A,C,D,E,F,G,H,Q 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 81.83 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7KAG _atom_sites.fract_transf_matrix[1][1] 0.01222 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008845 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006776 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0176 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 201 201 EDO EDO . D 2 EDO A 1 202 202 EDO EDO . E 2 EDO A 1 203 203 EDO EDO . F 2 EDO A 1 204 204 EDO EDO . G 2 EDO A 1 205 205 EDO EDO . H 2 EDO A 1 206 401 EDO EDO . I 2 EDO B 1 201 201 EDO EDO . J 2 EDO B 1 202 202 EDO EDO . K 2 EDO B 1 203 203 EDO EDO . L 3 SO4 B 1 204 204 SO4 SO4 . M 2 EDO B 1 205 205 EDO EDO . N 2 EDO B 1 206 206 EDO EDO . O 2 EDO B 1 207 207 EDO EDO . P 2 EDO B 1 208 401 EDO EDO . Q 4 HOH A 1 301 302 HOH HOH . Q 4 HOH A 2 302 303 HOH HOH . Q 4 HOH A 3 303 304 HOH HOH . Q 4 HOH A 4 304 305 HOH HOH . Q 4 HOH A 5 305 307 HOH HOH . Q 4 HOH A 6 306 308 HOH HOH . Q 4 HOH A 7 307 309 HOH HOH . Q 4 HOH A 8 308 310 HOH HOH . Q 4 HOH A 9 309 312 HOH HOH . Q 4 HOH A 10 310 313 HOH HOH . Q 4 HOH A 11 311 315 HOH HOH . R 4 HOH B 1 301 301 HOH HOH . R 4 HOH B 2 302 302 HOH HOH . R 4 HOH B 3 303 303 HOH HOH . R 4 HOH B 4 304 307 HOH HOH . R 4 HOH B 5 305 308 HOH HOH . R 4 HOH B 6 306 309 HOH HOH . R 4 HOH B 7 307 310 HOH HOH . R 4 HOH B 8 308 311 HOH HOH . R 4 HOH B 9 309 313 HOH HOH . R 4 HOH B 10 310 314 HOH HOH . R 4 HOH B 11 311 316 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 2 53.627 111.696 21.667 1 61.05 ? C1 EDO 206 A 1 HETATM 2 O O1 EDO . . . H 2 52.725 110.95 22.492 1 45.05 ? O1 EDO 206 A 1 HETATM 3 C C2 EDO . . . H 2 54.947 110.949 21.528 1 68.28 ? C2 EDO 206 A 1 HETATM 4 O O2 EDO . . . H 2 55.804 111.631 20.606 1 52.06 ? O2 EDO 206 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #