data_7KBC # _model_server_result.job_id jIC7Xn-RT70mY92i75jhJg _model_server_result.datetime_utc '2024-11-29 14:18:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kbc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7KBC # _exptl.entry_id 7KBC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 483.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Baloxavir acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KBC _cell.length_a 89.963 _cell.length_b 89.963 _cell.length_c 133.943 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KBC _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 I MN MN . A MN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc2 A OE2 GLU 81 A GLU 80 1_555 J MN MN . A MN 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 I MN MN . A MN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 J MN MN . A MN 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc5 A O ILE 121 A ILE 120 1_555 I MN MN . A MN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc6 B O1 E4Z . A E4Z 201 1_555 I MN MN . A MN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc7 B O2 E4Z . A E4Z 201 1_555 I MN MN . A MN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc8 B O2 E4Z . A E4Z 201 1_555 J MN MN . A MN 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc9 B O3 E4Z . A E4Z 201 1_555 J MN MN . A MN 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc10 J MN MN . A MN 209 1_555 L O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc11 J MN MN . A MN 209 1_555 L O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? # _chem_comp.formula 'C24 H19 F2 N3 O4 S' _chem_comp.formula_weight 483.487 _chem_comp.id E4Z _chem_comp.mon_nstd_flag . _chem_comp.name 'Baloxavir acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 O4 E4Z sing 83 n n C9 C10 E4Z sing 84 n n O4 C8 E4Z sing 85 n n C10 N3 E4Z sing 86 n n C8 C7 E4Z sing 87 n n O3 C6 E4Z doub 88 n n N3 C6 E4Z sing 89 n n N3 C7 E4Z sing 90 n n C6 C4 E4Z sing 91 n n C7 N2 E4Z sing 92 n n O2 C5 E4Z sing 93 n n C4 C5 E4Z doub 94 n n C4 N1 E4Z sing 95 n n C5 C1 E4Z sing 96 n n N2 N1 E4Z sing 97 n n N2 C11 E4Z sing 98 n n N1 C3 E4Z sing 99 n n C1 O1 E4Z doub 100 n n C1 C2 E4Z sing 101 n n C3 C2 E4Z doub 102 n n C11 C12 E4Z sing 103 n n C11 C16 E4Z sing 104 n n C21 C22 E4Z doub 105 n y C21 C12 E4Z sing 106 n y C22 C23 E4Z sing 107 n y C12 C13 E4Z doub 108 n y C23 F2 E4Z sing 109 n n C23 C24 E4Z doub 110 n y C13 C24 E4Z sing 111 n y C13 C14 E4Z sing 112 n n C24 F1 E4Z sing 113 n n C14 S3 E4Z sing 114 n n C16 C20 E4Z doub 115 n y C16 C15 E4Z sing 116 n y C20 C19 E4Z sing 117 n y S3 C15 E4Z sing 118 n n C15 C17 E4Z doub 119 n y C19 C18 E4Z doub 120 n y C17 C18 E4Z sing 121 n y C2 H1 E4Z sing 122 n n C7 H3 E4Z sing 123 n n C14 H4 E4Z sing 124 n n C14 H5 E4Z sing 125 n n C17 H6 E4Z sing 126 n n C18 H7 E4Z sing 127 n n C19 H8 E4Z sing 128 n n C20 H9 E4Z sing 129 n n C21 H10 E4Z sing 130 n n C22 H11 E4Z sing 131 n n C11 H12 E4Z sing 132 n n C8 H13 E4Z sing 133 n n C8 H14 E4Z sing 134 n n C9 H15 E4Z sing 135 n n C9 H16 E4Z sing 136 n n C10 H17 E4Z sing 137 n n C10 H18 E4Z sing 138 n n C3 H19 E4Z sing 139 n n O2 H20 E4Z sing 140 n n # _atom_sites.entry_id 7KBC _atom_sites.fract_transf_matrix[1][1] 0.011116 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011116 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007466 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 E4Z A 1 201 319 E4Z E4Z . C 3 QQ4 A 1 202 439 QQ4 PVP . D 4 GOL A 1 203 501 GOL GOL . E 4 GOL A 1 204 601 GOL GOL . F 4 GOL A 1 205 801 GOL GOL . G 4 GOL A 1 206 901 GOL GOL . H 4 GOL A 1 207 1001 GOL GOL . I 5 MN A 1 208 301 MN MN . J 5 MN A 1 209 302 MN MN . K 6 SO4 A 1 210 1 SO4 SO4 . L 7 HOH A 1 301 8 HOH HOH . L 7 HOH A 2 302 14 HOH HOH . L 7 HOH A 3 303 15 HOH HOH . L 7 HOH A 4 304 39 HOH HOH . L 7 HOH A 5 305 7 HOH HOH . L 7 HOH A 6 306 61 HOH HOH . L 7 HOH A 7 307 20 HOH HOH . L 7 HOH A 8 308 21 HOH HOH . L 7 HOH A 9 309 12 HOH HOH . L 7 HOH A 10 310 59 HOH HOH . L 7 HOH A 11 311 6 HOH HOH . L 7 HOH A 12 312 56 HOH HOH . L 7 HOH A 13 313 3 HOH HOH . L 7 HOH A 14 314 5 HOH HOH . L 7 HOH A 15 315 10 HOH HOH . L 7 HOH A 16 316 30 HOH HOH . L 7 HOH A 17 317 11 HOH HOH . L 7 HOH A 18 318 16 HOH HOH . L 7 HOH A 19 319 19 HOH HOH . L 7 HOH A 20 320 1 HOH HOH . L 7 HOH A 21 321 55 HOH HOH . L 7 HOH A 22 322 17 HOH HOH . L 7 HOH A 23 323 32 HOH HOH . L 7 HOH A 24 324 18 HOH HOH . L 7 HOH A 25 325 42 HOH HOH . L 7 HOH A 26 326 2 HOH HOH . L 7 HOH A 27 327 4 HOH HOH . L 7 HOH A 28 328 41 HOH HOH . L 7 HOH A 29 329 13 HOH HOH . L 7 HOH A 30 330 27 HOH HOH . L 7 HOH A 31 331 50 HOH HOH . L 7 HOH A 32 332 60 HOH HOH . L 7 HOH A 33 333 38 HOH HOH . L 7 HOH A 34 334 51 HOH HOH . L 7 HOH A 35 335 58 HOH HOH . L 7 HOH A 36 336 34 HOH HOH . L 7 HOH A 37 337 35 HOH HOH . L 7 HOH A 38 338 26 HOH HOH . L 7 HOH A 39 339 54 HOH HOH . L 7 HOH A 40 340 43 HOH HOH . L 7 HOH A 41 341 52 HOH HOH . L 7 HOH A 42 342 33 HOH HOH . L 7 HOH A 43 343 49 HOH HOH . L 7 HOH A 44 344 22 HOH HOH . L 7 HOH A 45 345 31 HOH HOH . L 7 HOH A 46 346 62 HOH HOH . L 7 HOH A 47 347 24 HOH HOH . L 7 HOH A 48 348 53 HOH HOH . L 7 HOH A 49 349 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 E4Z . . . B 2 29.179 -5.717 18.126 1 60.78 ? C1 E4Z 201 A 1 HETATM 2 N N1 E4Z . . . B 2 30.768 -4.976 15.875 1 54.75 ? N1 E4Z 201 A 1 HETATM 3 O O1 E4Z . . . B 2 28.517 -6.016 19.072 1 61.13 ? O1 E4Z 201 A 1 HETATM 4 C C2 E4Z . . . B 2 30.155 -6.678 17.627 1 61.44 ? C2 E4Z 201 A 1 HETATM 5 O O2 E4Z . . . B 2 28.047 -3.538 18.026 1 61.79 ? O2 E4Z 201 A 1 HETATM 6 O O3 E4Z . . . B 2 28.618 -2.158 16.363 1 61.21 ? O3 E4Z 201 A 1 HETATM 7 C C4 E4Z . . . B 2 29.711 -4.052 16.425 1 59.83 ? C4 E4Z 201 A 1 HETATM 8 O O4 E4Z . . . B 2 32.815 -1.164 15.004 1 55.61 ? O4 E4Z 201 A 1 HETATM 9 C C5 E4Z . . . B 2 28.998 -4.415 17.501 1 48.74 ? C5 E4Z 201 A 1 HETATM 10 C C6 E4Z . . . B 2 29.536 -2.825 15.943 1 58.97 ? C6 E4Z 201 A 1 HETATM 11 C C7 E4Z . . . B 2 31.625 -3.185 14.64 1 58.88 ? C7 E4Z 201 A 1 HETATM 12 C C13 E4Z . . . B 2 32.115 -5.389 11.779 1 63.02 ? C13 E4Z 201 A 1 HETATM 13 C C14 E4Z . . . B 2 33.062 -6.28 12.595 1 54.18 ? C14 E4Z 201 A 1 HETATM 14 C C15 E4Z . . . B 2 30.498 -7.432 13.665 1 51.5 ? C15 E4Z 201 A 1 HETATM 15 C C16 E4Z . . . B 2 29.865 -6.202 13.917 1 52.46 ? C16 E4Z 201 A 1 HETATM 16 C C17 E4Z . . . B 2 29.797 -8.637 13.879 1 49.39 ? C17 E4Z 201 A 1 HETATM 17 C C18 E4Z . . . B 2 28.49 -8.622 14.341 1 43.09 ? C18 E4Z 201 A 1 HETATM 18 C C19 E4Z . . . B 2 27.868 -7.39 14.601 1 42.8 ? C19 E4Z 201 A 1 HETATM 19 C C20 E4Z . . . B 2 28.551 -6.184 14.391 1 53.38 ? C20 E4Z 201 A 1 HETATM 20 C C21 E4Z . . . B 2 30.25 -3.978 11.239 1 58.77 ? C21 E4Z 201 A 1 HETATM 21 C C22 E4Z . . . B 2 30.675 -3.965 9.917 1 64.82 ? C22 E4Z 201 A 1 HETATM 22 C C23 E4Z . . . B 2 31.822 -4.669 9.535 1 67.9 ? C23 E4Z 201 A 1 HETATM 23 C C24 E4Z . . . B 2 32.559 -5.4 10.463 1 64.68 ? C24 E4Z 201 A 1 HETATM 24 F F2 E4Z . . . B 2 32.234 -4.644 8.207 1 65.01 ? F2 E4Z 201 A 1 HETATM 25 C C12 E4Z . . . B 2 30.981 -4.715 12.208 1 62.47 ? C12 E4Z 201 A 1 HETATM 26 F F1 E4Z . . . B 2 33.696 -6.09 10.04 1 67.43 ? F1 E4Z 201 A 1 HETATM 27 S S3 E4Z . . . B 2 32.176 -7.821 13.063 1 53.94 ? S3 E4Z 201 A 1 HETATM 28 C C11 E4Z . . . B 2 30.524 -4.762 13.763 1 53.98 ? C11 E4Z 201 A 1 HETATM 29 N N2 E4Z . . . B 2 31.413 -4.572 14.758 1 60.27 ? N2 E4Z 201 A 1 HETATM 30 C C8 E4Z . . . B 2 32.812 -2.514 15.425 1 60.11 ? C8 E4Z 201 A 1 HETATM 31 C C9 E4Z . . . B 2 31.66 -0.374 15.236 1 56.26 ? C9 E4Z 201 A 1 HETATM 32 C C10 E4Z . . . B 2 30.386 -0.956 14.597 1 59.14 ? C10 E4Z 201 A 1 HETATM 33 N N3 E4Z . . . B 2 30.449 -2.336 15.085 1 49.45 ? N3 E4Z 201 A 1 HETATM 34 C C3 E4Z . . . B 2 30.911 -6.344 16.589 1 55.59 ? C3 E4Z 201 A 1 HETATM 35 H H1 E4Z . . . B 2 30.246 -7.512 18.031 1 73.74 ? H1 E4Z 201 A 1 HETATM 36 H H3 E4Z . . . B 2 31.807 -3.183 13.719 1 70.67 ? H3 E4Z 201 A 1 HETATM 37 H H4 E4Z . . . B 2 33.818 -6.493 12.08 1 65.03 ? H4 E4Z 201 A 1 HETATM 38 H H5 E4Z . . . B 2 33.336 -5.825 13.369 1 65.03 ? H5 E4Z 201 A 1 HETATM 39 H H6 E4Z . . . B 2 30.216 -9.448 13.707 1 59.28 ? H6 E4Z 201 A 1 HETATM 40 H H7 E4Z . . . B 2 28.031 -9.418 14.479 1 51.72 ? H7 E4Z 201 A 1 HETATM 41 H H8 E4Z . . . B 2 26.993 -7.376 14.915 1 51.37 ? H8 E4Z 201 A 1 HETATM 42 H H9 E4Z . . . B 2 28.13 -5.375 14.568 1 64.07 ? H9 E4Z 201 A 1 HETATM 43 H H10 E4Z . . . B 2 29.488 -3.507 11.489 1 70.53 ? H10 E4Z 201 A 1 HETATM 44 H H11 E4Z . . . B 2 30.196 -3.485 9.281 1 77.79 ? H11 E4Z 201 A 1 HETATM 45 H H12 E4Z . . . B 2 29.977 -4.007 13.887 1 64.79 ? H12 E4Z 201 A 1 HETATM 46 H H13 E4Z . . . B 2 32.571 -2.514 16.333 1 72.15 ? H13 E4Z 201 A 1 HETATM 47 H H14 E4Z . . . B 2 33.604 -2.901 15.104 1 72.15 ? H14 E4Z 201 A 1 HETATM 48 H H15 E4Z . . . B 2 31.524 -0.309 16.163 1 67.53 ? H15 E4Z 201 A 1 HETATM 49 H H16 E4Z . . . B 2 31.807 0.484 14.881 1 67.53 ? H16 E4Z 201 A 1 HETATM 50 H H17 E4Z . . . B 2 30.423 -0.92 13.66 1 70.98 ? H17 E4Z 201 A 1 HETATM 51 H H18 E4Z . . . B 2 29.615 -0.515 14.902 1 70.98 ? H18 E4Z 201 A 1 HETATM 52 H H19 E4Z . . . B 2 31.546 -6.949 16.279 1 66.72 ? H19 E4Z 201 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 52 #