data_7KBC
#
_model_server_result.job_id            czxqnsvIWAJIKWR6KCtd1Q 
_model_server_result.datetime_utc      '2024-11-29 14:57:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kbc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":205}' 
#
_entry.id    7KBC 
#
_exptl.entry_id    7KBC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7KBC 
_cell.length_a            89.963 
_cell.length_b            89.963 
_cell.length_c            133.943 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KBC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    'I 4 2' 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 61 A HIS 41 1_555 I MN MN . A MN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc2 A OE2 GLU 81 A GLU 80 1_555 J MN MN . A MN 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? 
metalc ? metalc3 A OD2 ASP 109 A ASP 108 1_555 I MN MN . A MN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? 
metalc ? metalc4 A OD1 ASP 109 A ASP 108 1_555 J MN MN . A MN 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc5 A O ILE 121 A ILE 120 1_555 I MN MN . A MN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
metalc ? metalc6 B O1 E4Z . A E4Z 201 1_555 I MN MN . A MN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc7 B O2 E4Z . A E4Z 201 1_555 I MN MN . A MN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc8 B O2 E4Z . A E4Z 201 1_555 J MN MN . A MN 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc9 B O3 E4Z . A E4Z 201 1_555 J MN MN . A MN 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
metalc ? metalc10 J MN MN . A MN 209 1_555 L O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? 
metalc ? metalc11 J MN MN . A MN 209 1_555 L O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 187 n n 
C1 C2 GOL sing 188 n n 
C1 H11 GOL sing 189 n n 
C1 H12 GOL sing 190 n n 
O1 HO1 GOL sing 191 n n 
C2 O2 GOL sing 192 n n 
C2 C3 GOL sing 193 n n 
C2 H2 GOL sing 194 n n 
O2 HO2 GOL sing 195 n n 
C3 O3 GOL sing 196 n n 
C3 H31 GOL sing 197 n n 
C3 H32 GOL sing 198 n n 
O3 HO3 GOL sing 199 n n 
#
_atom_sites.entry_id                     7KBC 
_atom_sites.fract_transf_matrix[1][1]    0.011116 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011116 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007466 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 E4Z A 1 201 319 E4Z E4Z . 
C 3 QQ4 A 1 202 439 QQ4 PVP . 
D 4 GOL A 1 203 501 GOL GOL . 
E 4 GOL A 1 204 601 GOL GOL . 
F 4 GOL A 1 205 801 GOL GOL . 
G 4 GOL A 1 206 901 GOL GOL . 
H 4 GOL A 1 207 1001 GOL GOL . 
I 5 MN A 1 208 301 MN MN . 
J 5 MN A 1 209 302 MN MN . 
K 6 SO4 A 1 210 1 SO4 SO4 . 
L 7 HOH A 1 301 8 HOH HOH . 
L 7 HOH A 2 302 14 HOH HOH . 
L 7 HOH A 3 303 15 HOH HOH . 
L 7 HOH A 4 304 39 HOH HOH . 
L 7 HOH A 5 305 7 HOH HOH . 
L 7 HOH A 6 306 61 HOH HOH . 
L 7 HOH A 7 307 20 HOH HOH . 
L 7 HOH A 8 308 21 HOH HOH . 
L 7 HOH A 9 309 12 HOH HOH . 
L 7 HOH A 10 310 59 HOH HOH . 
L 7 HOH A 11 311 6 HOH HOH . 
L 7 HOH A 12 312 56 HOH HOH . 
L 7 HOH A 13 313 3 HOH HOH . 
L 7 HOH A 14 314 5 HOH HOH . 
L 7 HOH A 15 315 10 HOH HOH . 
L 7 HOH A 16 316 30 HOH HOH . 
L 7 HOH A 17 317 11 HOH HOH . 
L 7 HOH A 18 318 16 HOH HOH . 
L 7 HOH A 19 319 19 HOH HOH . 
L 7 HOH A 20 320 1 HOH HOH . 
L 7 HOH A 21 321 55 HOH HOH . 
L 7 HOH A 22 322 17 HOH HOH . 
L 7 HOH A 23 323 32 HOH HOH . 
L 7 HOH A 24 324 18 HOH HOH . 
L 7 HOH A 25 325 42 HOH HOH . 
L 7 HOH A 26 326 2 HOH HOH . 
L 7 HOH A 27 327 4 HOH HOH . 
L 7 HOH A 28 328 41 HOH HOH . 
L 7 HOH A 29 329 13 HOH HOH . 
L 7 HOH A 30 330 27 HOH HOH . 
L 7 HOH A 31 331 50 HOH HOH . 
L 7 HOH A 32 332 60 HOH HOH . 
L 7 HOH A 33 333 38 HOH HOH . 
L 7 HOH A 34 334 51 HOH HOH . 
L 7 HOH A 35 335 58 HOH HOH . 
L 7 HOH A 36 336 34 HOH HOH . 
L 7 HOH A 37 337 35 HOH HOH . 
L 7 HOH A 38 338 26 HOH HOH . 
L 7 HOH A 39 339 54 HOH HOH . 
L 7 HOH A 40 340 43 HOH HOH . 
L 7 HOH A 41 341 52 HOH HOH . 
L 7 HOH A 42 342 33 HOH HOH . 
L 7 HOH A 43 343 49 HOH HOH . 
L 7 HOH A 44 344 22 HOH HOH . 
L 7 HOH A 45 345 31 HOH HOH . 
L 7 HOH A 46 346 62 HOH HOH . 
L 7 HOH A 47 347 24 HOH HOH . 
L 7 HOH A 48 348 53 HOH HOH . 
L 7 HOH A 49 349 28 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 4 34.793 -5.629 17.683 1 85.42 ? C1 GOL 205 A 1 
HETATM 2 O O1 GOL . . . F 4 34.585 -6.454 16.583 1 83.31 ? O1 GOL 205 A 1 
HETATM 3 C C2 GOL . . . F 4 33.973 -6.198 18.865 1 91.3 ? C2 GOL 205 A 1 
HETATM 4 O O2 GOL . . . F 4 34.412 -7.45 19.246 1 88.3 ? O2 GOL 205 A 1 
HETATM 5 C C3 GOL . . . F 4 34.134 -5.15 20 1 91.84 ? C3 GOL 205 A 1 
HETATM 6 O O3 GOL . . . F 4 33.757 -5.77 21.195 1 77.07 ? O3 GOL 205 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           459 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#