data_7KBY
#
_model_server_result.job_id            sfD3hpKAK-dsOeT4tuwqHw 
_model_server_result.datetime_utc      '2024-11-27 02:32:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kby 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":202}' 
#
_entry.id    7KBY 
#
_exptl.entry_id    7KBY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              26.017 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CYANIDE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7KBY 
_cell.length_a            57.56 
_cell.length_b            57.56 
_cell.length_c            183.45 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 7KBY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
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_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 57.56 57.56 0 
3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 57.56 57.56 0 
4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OH TYR 124 A TYR 124 1_555 B FE1 KM3 . A KM3 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? 
metalc ? metalc2 B FE1 KM3 . A KM3 201 1_555 C N CYN . A CYN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc3 B FE1 KM3 . A KM3 201 1_555 E O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc4 B FE1 KM3 . A KM3 201 1_555 E O HOH . A HOH 301 10_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
#
_chem_comp.formula           'C N -1' 
_chem_comp.formula_weight    26.017 
_chem_comp.id                CYN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CYANIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_chem_comp_bond.atom_id_1             C 
_chem_comp_bond.atom_id_2             N 
_chem_comp_bond.comp_id               CYN 
_chem_comp_bond.value_order           trip 
_chem_comp_bond.pdbx_ordinal          76 
_chem_comp_bond.pdbx_stereo_config    n 
_chem_comp_bond.pdbx_aromatic_flag    n 
#
_atom_sites.entry_id                     7KBY 
_atom_sites.fract_transf_matrix[1][1]    0.017373 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017373 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005451 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 KM3 A 1 201 1 KM3 KM3 . 
C 3 CYN A 1 202 1 CYN CYN . 
D 4 ACT A 1 203 1 ACT ACT . 
E 5 HOH A 1 301 1 HOH HOH . 
E 5 HOH A 2 302 128 HOH HOH . 
E 5 HOH A 3 303 73 HOH HOH . 
E 5 HOH A 4 304 33 HOH HOH . 
E 5 HOH A 5 305 3 HOH HOH . 
E 5 HOH A 6 306 7 HOH HOH . 
E 5 HOH A 7 307 32 HOH HOH . 
E 5 HOH A 8 308 43 HOH HOH . 
E 5 HOH A 9 309 24 HOH HOH . 
E 5 HOH A 10 310 8 HOH HOH . 
E 5 HOH A 11 311 20 HOH HOH . 
E 5 HOH A 12 312 11 HOH HOH . 
E 5 HOH A 13 313 5 HOH HOH . 
E 5 HOH A 14 314 16 HOH HOH . 
E 5 HOH A 15 315 2 HOH HOH . 
E 5 HOH A 16 316 12 HOH HOH . 
E 5 HOH A 17 317 29 HOH HOH . 
E 5 HOH A 18 318 6 HOH HOH . 
E 5 HOH A 19 319 121 HOH HOH . 
E 5 HOH A 20 320 10 HOH HOH . 
E 5 HOH A 21 321 109 HOH HOH . 
E 5 HOH A 22 322 18 HOH HOH . 
E 5 HOH A 23 323 42 HOH HOH . 
E 5 HOH A 24 324 31 HOH HOH . 
E 5 HOH A 25 325 76 HOH HOH . 
E 5 HOH A 26 326 129 HOH HOH . 
E 5 HOH A 27 327 37 HOH HOH . 
E 5 HOH A 28 328 130 HOH HOH . 
E 5 HOH A 29 329 15 HOH HOH . 
E 5 HOH A 30 330 58 HOH HOH . 
E 5 HOH A 31 331 21 HOH HOH . 
E 5 HOH A 32 332 36 HOH HOH . 
E 5 HOH A 33 333 17 HOH HOH . 
E 5 HOH A 34 334 55 HOH HOH . 
E 5 HOH A 35 335 25 HOH HOH . 
E 5 HOH A 36 336 113 HOH HOH . 
E 5 HOH A 37 337 50 HOH HOH . 
E 5 HOH A 38 338 46 HOH HOH . 
E 5 HOH A 39 339 62 HOH HOH . 
E 5 HOH A 40 340 45 HOH HOH . 
E 5 HOH A 41 341 13 HOH HOH . 
E 5 HOH A 42 342 41 HOH HOH . 
E 5 HOH A 43 343 80 HOH HOH . 
E 5 HOH A 44 344 26 HOH HOH . 
E 5 HOH A 45 345 79 HOH HOH . 
E 5 HOH A 46 346 64 HOH HOH . 
E 5 HOH A 47 347 30 HOH HOH . 
E 5 HOH A 48 348 4 HOH HOH . 
E 5 HOH A 49 349 19 HOH HOH . 
E 5 HOH A 50 350 35 HOH HOH . 
E 5 HOH A 51 351 40 HOH HOH . 
E 5 HOH A 52 352 34 HOH HOH . 
E 5 HOH A 53 353 68 HOH HOH . 
E 5 HOH A 54 354 39 HOH HOH . 
E 5 HOH A 55 355 23 HOH HOH . 
E 5 HOH A 56 356 22 HOH HOH . 
E 5 HOH A 57 357 44 HOH HOH . 
E 5 HOH A 58 358 47 HOH HOH . 
E 5 HOH A 59 359 48 HOH HOH . 
E 5 HOH A 60 360 38 HOH HOH . 
E 5 HOH A 61 361 9 HOH HOH . 
E 5 HOH A 62 362 53 HOH HOH . 
E 5 HOH A 63 363 120 HOH HOH . 
E 5 HOH A 64 364 61 HOH HOH . 
E 5 HOH A 65 365 104 HOH HOH . 
E 5 HOH A 66 366 69 HOH HOH . 
E 5 HOH A 67 367 57 HOH HOH . 
E 5 HOH A 68 368 72 HOH HOH . 
E 5 HOH A 69 369 97 HOH HOH . 
E 5 HOH A 70 370 127 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C CYN . . . C 3 29.007 29.423 -17.899 0.5 18.06 ? C CYN 202 A 1 
HETATM 2 N N CYN . . . C 3 28.568 28.168 -17.9 0.5 15.91 ? N CYN 202 A 1 
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_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           2 
#