data_7KBY # _model_server_result.job_id 5TEPT5eUMleLr6Kk3eAJzg _model_server_result.datetime_utc '2024-11-13 19:17:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kby # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 7KBY # _exptl.entry_id 7KBY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KBY _cell.length_a 57.56 _cell.length_b 57.56 _cell.length_c 183.45 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KBY _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 57.56 57.56 0 3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 57.56 57.56 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 124 A TYR 124 1_555 B FE1 KM3 . A KM3 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? metalc ? metalc2 B FE1 KM3 . A KM3 201 1_555 C N CYN . A CYN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc3 B FE1 KM3 . A KM3 201 1_555 E O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc4 B FE1 KM3 . A KM3 201 1_555 E O HOH . A HOH 301 10_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 7KBY _atom_sites.fract_transf_matrix[1][1] 0.017373 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017373 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005451 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KM3 A 1 201 1 KM3 KM3 . C 3 CYN A 1 202 1 CYN CYN . D 4 ACT A 1 203 1 ACT ACT . E 5 HOH A 1 301 1 HOH HOH . E 5 HOH A 2 302 128 HOH HOH . E 5 HOH A 3 303 73 HOH HOH . E 5 HOH A 4 304 33 HOH HOH . E 5 HOH A 5 305 3 HOH HOH . E 5 HOH A 6 306 7 HOH HOH . E 5 HOH A 7 307 32 HOH HOH . E 5 HOH A 8 308 43 HOH HOH . E 5 HOH A 9 309 24 HOH HOH . E 5 HOH A 10 310 8 HOH HOH . E 5 HOH A 11 311 20 HOH HOH . E 5 HOH A 12 312 11 HOH HOH . E 5 HOH A 13 313 5 HOH HOH . E 5 HOH A 14 314 16 HOH HOH . E 5 HOH A 15 315 2 HOH HOH . E 5 HOH A 16 316 12 HOH HOH . E 5 HOH A 17 317 29 HOH HOH . E 5 HOH A 18 318 6 HOH HOH . E 5 HOH A 19 319 121 HOH HOH . E 5 HOH A 20 320 10 HOH HOH . E 5 HOH A 21 321 109 HOH HOH . E 5 HOH A 22 322 18 HOH HOH . E 5 HOH A 23 323 42 HOH HOH . E 5 HOH A 24 324 31 HOH HOH . E 5 HOH A 25 325 76 HOH HOH . E 5 HOH A 26 326 129 HOH HOH . E 5 HOH A 27 327 37 HOH HOH . E 5 HOH A 28 328 130 HOH HOH . E 5 HOH A 29 329 15 HOH HOH . E 5 HOH A 30 330 58 HOH HOH . E 5 HOH A 31 331 21 HOH HOH . E 5 HOH A 32 332 36 HOH HOH . E 5 HOH A 33 333 17 HOH HOH . E 5 HOH A 34 334 55 HOH HOH . E 5 HOH A 35 335 25 HOH HOH . E 5 HOH A 36 336 113 HOH HOH . E 5 HOH A 37 337 50 HOH HOH . E 5 HOH A 38 338 46 HOH HOH . E 5 HOH A 39 339 62 HOH HOH . E 5 HOH A 40 340 45 HOH HOH . E 5 HOH A 41 341 13 HOH HOH . E 5 HOH A 42 342 41 HOH HOH . E 5 HOH A 43 343 80 HOH HOH . E 5 HOH A 44 344 26 HOH HOH . E 5 HOH A 45 345 79 HOH HOH . E 5 HOH A 46 346 64 HOH HOH . E 5 HOH A 47 347 30 HOH HOH . E 5 HOH A 48 348 4 HOH HOH . E 5 HOH A 49 349 19 HOH HOH . E 5 HOH A 50 350 35 HOH HOH . E 5 HOH A 51 351 40 HOH HOH . E 5 HOH A 52 352 34 HOH HOH . E 5 HOH A 53 353 68 HOH HOH . E 5 HOH A 54 354 39 HOH HOH . E 5 HOH A 55 355 23 HOH HOH . E 5 HOH A 56 356 22 HOH HOH . E 5 HOH A 57 357 44 HOH HOH . E 5 HOH A 58 358 47 HOH HOH . E 5 HOH A 59 359 48 HOH HOH . E 5 HOH A 60 360 38 HOH HOH . E 5 HOH A 61 361 9 HOH HOH . E 5 HOH A 62 362 53 HOH HOH . E 5 HOH A 63 363 120 HOH HOH . E 5 HOH A 64 364 61 HOH HOH . E 5 HOH A 65 365 104 HOH HOH . E 5 HOH A 66 366 69 HOH HOH . E 5 HOH A 67 367 57 HOH HOH . E 5 HOH A 68 368 72 HOH HOH . E 5 HOH A 69 369 97 HOH HOH . E 5 HOH A 70 370 127 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . D 4 14.39 14.712 -22.931 0.5 53.96 ? C ACT 203 A 1 HETATM 2 O O ACT . . . D 4 14.066 15.298 -23.988 0.5 49.28 ? O ACT 203 A 1 HETATM 3 O OXT ACT . . . D 4 14.714 15.297 -21.874 0.5 49.25 ? OXT ACT 203 A 1 HETATM 4 C CH3 ACT . . . D 4 14.39 13.184 -22.931 0.5 54.32 ? CH3 ACT 203 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #