data_7KBZ # _model_server_result.job_id ga_qlzo42Nr480dlO7wJXw _model_server_result.datetime_utc '2024-11-30 08:57:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kbz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 7KBZ # _exptl.entry_id 7KBZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 26.017 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYANIDE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.42 _cell.angle_gamma 90 _cell.entry_id 7KBZ _cell.length_a 192.268 _cell.length_b 57.56 _cell.length_c 57.56 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KBZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 124 A TYR 124 1_555 E FE1 KM3 . A KM3 201 1_555 ? ? ? ? C ? ? ? ? ? ? ? 1.769 ? metalc ? metalc2 E FE1 KM3 . A KM3 201 1_555 K O HOH . A HOH 301 1_555 ? C ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc3 F N CYN . A CYN 202 1_555 J FE1 KM3 . D KM3 201 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.527 ? metalc ? metalc4 K O HOH . A HOH 301 1_555 J FE1 KM3 . D KM3 201 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.04 ? metalc ? metalc5 B OH TYR 124 B TYR 124 1_555 G FE1 KM3 . B KM3 201 1_555 ? ? ? ? D ? ? ? ? ? ? ? 1.809 ? metalc ? metalc6 G FE1 KM3 . B KM3 201 1_555 M O HOH . C HOH 301 1_555 ? D ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc7 H N CYN . B CYN 202 1_555 I FE1 KM3 . C KM3 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.475 ? metalc ? metalc8 C OH TYR 124 C TYR 124 1_555 I FE1 KM3 . C KM3 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.813 ? metalc ? metalc9 I FE1 KM3 . C KM3 201 1_555 M O HOH . C HOH 301 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc10 D OH TYR 124 D TYR 124 1_555 J FE1 KM3 . D KM3 201 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.818 ? # _chem_comp.formula 'C N -1' _chem_comp.formula_weight 26.017 _chem_comp.id CYN _chem_comp.mon_nstd_flag . _chem_comp.name 'CYANIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 C _chem_comp_bond.atom_id_2 N _chem_comp_bond.comp_id CYN _chem_comp_bond.value_order trip _chem_comp_bond.pdbx_ordinal 70 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 7KBZ _atom_sites.fract_transf_matrix[1][1] 0.005201 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001632 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017373 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018208 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 KM3 A 1 201 1 KM3 KM3 . F 3 CYN A 1 202 2 CYN CYN . G 2 KM3 B 1 201 1 KM3 KM3 . H 3 CYN B 1 202 1 CYN CYN . I 2 KM3 C 1 201 1 KM3 KM3 . J 2 KM3 D 1 201 1 KM3 KM3 . K 4 HOH A 1 301 2 HOH HOH . K 4 HOH A 2 302 125 HOH HOH . K 4 HOH A 3 303 109 HOH HOH . K 4 HOH A 4 304 40 HOH HOH . K 4 HOH A 5 305 70 HOH HOH . K 4 HOH A 6 306 60 HOH HOH . K 4 HOH A 7 307 173 HOH HOH . K 4 HOH A 8 308 61 HOH HOH . K 4 HOH A 9 309 54 HOH HOH . K 4 HOH A 10 310 184 HOH HOH . K 4 HOH A 11 311 89 HOH HOH . K 4 HOH A 12 312 32 HOH HOH . K 4 HOH A 13 313 52 HOH HOH . K 4 HOH A 14 314 198 HOH HOH . K 4 HOH A 15 315 5 HOH HOH . K 4 HOH A 16 316 230 HOH HOH . K 4 HOH A 17 317 163 HOH HOH . K 4 HOH A 18 318 285 HOH HOH . K 4 HOH A 19 319 15 HOH HOH . K 4 HOH A 20 320 134 HOH HOH . K 4 HOH A 21 321 396 HOH HOH . K 4 HOH A 22 322 102 HOH HOH . K 4 HOH A 23 323 37 HOH HOH . K 4 HOH A 24 324 7 HOH HOH . K 4 HOH A 25 325 328 HOH HOH . K 4 HOH A 26 326 299 HOH HOH . K 4 HOH A 27 327 63 HOH HOH . K 4 HOH A 28 328 107 HOH HOH . K 4 HOH A 29 329 92 HOH HOH . K 4 HOH A 30 330 162 HOH HOH . K 4 HOH A 31 331 463 HOH HOH . K 4 HOH A 32 332 161 HOH HOH . K 4 HOH A 33 333 156 HOH HOH . K 4 HOH A 34 334 240 HOH HOH . K 4 HOH A 35 335 181 HOH HOH . K 4 HOH A 36 336 150 HOH HOH . K 4 HOH A 37 337 219 HOH HOH . K 4 HOH A 38 338 83 HOH HOH . K 4 HOH A 39 339 238 HOH HOH . K 4 HOH A 40 340 38 HOH HOH . K 4 HOH A 41 341 153 HOH HOH . K 4 HOH A 42 342 79 HOH HOH . K 4 HOH A 43 343 322 HOH HOH . K 4 HOH A 44 344 56 HOH HOH . K 4 HOH A 45 345 466 HOH HOH . K 4 HOH A 46 346 129 HOH HOH . K 4 HOH A 47 347 45 HOH HOH . K 4 HOH A 48 348 250 HOH HOH . K 4 HOH A 49 349 12 HOH HOH . K 4 HOH A 50 350 204 HOH HOH . K 4 HOH A 51 351 108 HOH HOH . K 4 HOH A 52 352 164 HOH HOH . K 4 HOH A 53 353 141 HOH HOH . K 4 HOH A 54 354 91 HOH HOH . K 4 HOH A 55 355 76 HOH HOH . K 4 HOH A 56 356 199 HOH HOH . K 4 HOH A 57 357 213 HOH HOH . K 4 HOH A 58 358 16 HOH HOH . K 4 HOH A 59 359 266 HOH HOH . K 4 HOH A 60 360 361 HOH HOH . K 4 HOH A 61 361 207 HOH HOH . K 4 HOH A 62 362 132 HOH HOH . K 4 HOH A 63 363 415 HOH HOH . K 4 HOH A 64 364 51 HOH HOH . K 4 HOH A 65 365 313 HOH HOH . K 4 HOH A 66 366 431 HOH HOH . K 4 HOH A 67 367 315 HOH HOH . K 4 HOH A 68 368 338 HOH HOH . L 4 HOH B 1 301 117 HOH HOH . L 4 HOH B 2 302 31 HOH HOH . L 4 HOH B 3 303 137 HOH HOH . L 4 HOH B 4 304 113 HOH HOH . L 4 HOH B 5 305 281 HOH HOH . L 4 HOH B 6 306 287 HOH HOH . L 4 HOH B 7 307 39 HOH HOH . L 4 HOH B 8 308 43 HOH HOH . L 4 HOH B 9 309 67 HOH HOH . L 4 HOH B 10 310 36 HOH HOH . L 4 HOH B 11 311 237 HOH HOH . L 4 HOH B 12 312 97 HOH HOH . L 4 HOH B 13 313 95 HOH HOH . L 4 HOH B 14 314 20 HOH HOH . L 4 HOH B 15 315 128 HOH HOH . L 4 HOH B 16 316 223 HOH HOH . L 4 HOH B 17 317 48 HOH HOH . L 4 HOH B 18 318 71 HOH HOH . L 4 HOH B 19 319 8 HOH HOH . L 4 HOH B 20 320 22 HOH HOH . L 4 HOH B 21 321 122 HOH HOH . L 4 HOH B 22 322 159 HOH HOH . L 4 HOH B 23 323 469 HOH HOH . L 4 HOH B 24 324 119 HOH HOH . L 4 HOH B 25 325 152 HOH HOH . L 4 HOH B 26 326 205 HOH HOH . L 4 HOH B 27 327 25 HOH HOH . L 4 HOH B 28 328 58 HOH HOH . L 4 HOH B 29 329 87 HOH HOH . L 4 HOH B 30 330 214 HOH HOH . L 4 HOH B 31 331 208 HOH HOH . L 4 HOH B 32 332 192 HOH HOH . L 4 HOH B 33 333 327 HOH HOH . L 4 HOH B 34 334 99 HOH HOH . L 4 HOH B 35 335 186 HOH HOH . L 4 HOH B 36 336 86 HOH HOH . L 4 HOH B 37 337 50 HOH HOH . L 4 HOH B 38 338 118 HOH HOH . L 4 HOH B 39 339 171 HOH HOH . L 4 HOH B 40 340 172 HOH HOH . L 4 HOH B 41 341 194 HOH HOH . L 4 HOH B 42 342 217 HOH HOH . L 4 HOH B 43 343 387 HOH HOH . L 4 HOH B 44 344 160 HOH HOH . L 4 HOH B 45 345 218 HOH HOH . L 4 HOH B 46 346 233 HOH HOH . L 4 HOH B 47 347 245 HOH HOH . L 4 HOH B 48 348 142 HOH HOH . L 4 HOH B 49 349 80 HOH HOH . L 4 HOH B 50 350 358 HOH HOH . L 4 HOH B 51 351 65 HOH HOH . L 4 HOH B 52 352 82 HOH HOH . L 4 HOH B 53 353 255 HOH HOH . L 4 HOH B 54 354 384 HOH HOH . L 4 HOH B 55 355 105 HOH HOH . L 4 HOH B 56 356 202 HOH HOH . L 4 HOH B 57 357 216 HOH HOH . L 4 HOH B 58 358 104 HOH HOH . L 4 HOH B 59 359 242 HOH HOH . L 4 HOH B 60 360 19 HOH HOH . L 4 HOH B 61 361 337 HOH HOH . L 4 HOH B 62 362 187 HOH HOH . L 4 HOH B 63 363 241 HOH HOH . L 4 HOH B 64 364 254 HOH HOH . L 4 HOH B 65 365 145 HOH HOH . L 4 HOH B 66 366 262 HOH HOH . L 4 HOH B 67 367 53 HOH HOH . L 4 HOH B 68 368 21 HOH HOH . L 4 HOH B 69 369 297 HOH HOH . L 4 HOH B 70 370 370 HOH HOH . L 4 HOH B 71 371 239 HOH HOH . L 4 HOH B 72 372 312 HOH HOH . L 4 HOH B 73 373 436 HOH HOH . L 4 HOH B 74 374 225 HOH HOH . M 4 HOH C 1 301 1 HOH HOH . M 4 HOH C 2 302 64 HOH HOH . M 4 HOH C 3 303 6 HOH HOH . M 4 HOH C 4 304 30 HOH HOH . M 4 HOH C 5 305 66 HOH HOH . M 4 HOH C 6 306 112 HOH HOH . M 4 HOH C 7 307 49 HOH HOH . M 4 HOH C 8 308 298 HOH HOH . M 4 HOH C 9 309 144 HOH HOH . M 4 HOH C 10 310 77 HOH HOH . M 4 HOH C 11 311 78 HOH HOH . M 4 HOH C 12 312 73 HOH HOH . M 4 HOH C 13 313 140 HOH HOH . M 4 HOH C 14 314 10 HOH HOH . M 4 HOH C 15 315 211 HOH HOH . M 4 HOH C 16 316 14 HOH HOH . M 4 HOH C 17 317 101 HOH HOH . M 4 HOH C 18 318 130 HOH HOH . M 4 HOH C 19 319 280 HOH HOH . M 4 HOH C 20 320 138 HOH HOH . M 4 HOH C 21 321 174 HOH HOH . M 4 HOH C 22 322 467 HOH HOH . M 4 HOH C 23 323 212 HOH HOH . M 4 HOH C 24 324 168 HOH HOH . M 4 HOH C 25 325 41 HOH HOH . M 4 HOH C 26 326 106 HOH HOH . M 4 HOH C 27 327 93 HOH HOH . M 4 HOH C 28 328 468 HOH HOH . M 4 HOH C 29 329 158 HOH HOH . M 4 HOH C 30 330 135 HOH HOH . M 4 HOH C 31 331 23 HOH HOH . M 4 HOH C 32 332 155 HOH HOH . M 4 HOH C 33 333 231 HOH HOH . M 4 HOH C 34 334 74 HOH HOH . M 4 HOH C 35 335 11 HOH HOH . M 4 HOH C 36 336 72 HOH HOH . M 4 HOH C 37 337 127 HOH HOH . M 4 HOH C 38 338 148 HOH HOH . M 4 HOH C 39 339 330 HOH HOH . M 4 HOH C 40 340 221 HOH HOH . M 4 HOH C 41 341 55 HOH HOH . M 4 HOH C 42 342 261 HOH HOH . M 4 HOH C 43 343 114 HOH HOH . M 4 HOH C 44 344 177 HOH HOH . M 4 HOH C 45 345 289 HOH HOH . M 4 HOH C 46 346 116 HOH HOH . M 4 HOH C 47 347 244 HOH HOH . M 4 HOH C 48 348 69 HOH HOH . M 4 HOH C 49 349 390 HOH HOH . M 4 HOH C 50 350 269 HOH HOH . M 4 HOH C 51 351 222 HOH HOH . M 4 HOH C 52 352 100 HOH HOH . M 4 HOH C 53 353 444 HOH HOH . M 4 HOH C 54 354 414 HOH HOH . M 4 HOH C 55 355 200 HOH HOH . M 4 HOH C 56 356 232 HOH HOH . M 4 HOH C 57 357 209 HOH HOH . M 4 HOH C 58 358 382 HOH HOH . M 4 HOH C 59 359 429 HOH HOH . N 4 HOH D 1 301 111 HOH HOH . N 4 HOH D 2 302 33 HOH HOH . N 4 HOH D 3 303 57 HOH HOH . N 4 HOH D 4 304 381 HOH HOH . N 4 HOH D 5 305 229 HOH HOH . N 4 HOH D 6 306 175 HOH HOH . N 4 HOH D 7 307 94 HOH HOH . N 4 HOH D 8 308 88 HOH HOH . N 4 HOH D 9 309 4 HOH HOH . N 4 HOH D 10 310 96 HOH HOH . N 4 HOH D 11 311 166 HOH HOH . N 4 HOH D 12 312 3 HOH HOH . N 4 HOH D 13 313 27 HOH HOH . N 4 HOH D 14 314 115 HOH HOH . N 4 HOH D 15 315 265 HOH HOH . N 4 HOH D 16 316 47 HOH HOH . N 4 HOH D 17 317 34 HOH HOH . N 4 HOH D 18 318 98 HOH HOH . N 4 HOH D 19 319 68 HOH HOH . N 4 HOH D 20 320 290 HOH HOH . N 4 HOH D 21 321 29 HOH HOH . N 4 HOH D 22 322 44 HOH HOH . N 4 HOH D 23 323 464 HOH HOH . N 4 HOH D 24 324 139 HOH HOH . N 4 HOH D 25 325 465 HOH HOH . N 4 HOH D 26 326 190 HOH HOH . N 4 HOH D 27 327 59 HOH HOH . N 4 HOH D 28 328 319 HOH HOH . N 4 HOH D 29 329 28 HOH HOH . N 4 HOH D 30 330 284 HOH HOH . N 4 HOH D 31 331 203 HOH HOH . N 4 HOH D 32 332 195 HOH HOH . N 4 HOH D 33 333 271 HOH HOH . N 4 HOH D 34 334 278 HOH HOH . N 4 HOH D 35 335 126 HOH HOH . N 4 HOH D 36 336 62 HOH HOH . N 4 HOH D 37 337 188 HOH HOH . N 4 HOH D 38 338 42 HOH HOH . N 4 HOH D 39 339 288 HOH HOH . N 4 HOH D 40 340 341 HOH HOH . N 4 HOH D 41 341 149 HOH HOH . N 4 HOH D 42 342 404 HOH HOH . N 4 HOH D 43 343 35 HOH HOH . N 4 HOH D 44 344 235 HOH HOH . N 4 HOH D 45 345 75 HOH HOH . N 4 HOH D 46 346 183 HOH HOH . N 4 HOH D 47 347 24 HOH HOH . N 4 HOH D 48 348 182 HOH HOH . N 4 HOH D 49 349 103 HOH HOH . N 4 HOH D 50 350 143 HOH HOH . N 4 HOH D 51 351 81 HOH HOH . N 4 HOH D 52 352 307 HOH HOH . N 4 HOH D 53 353 84 HOH HOH . N 4 HOH D 54 354 197 HOH HOH . N 4 HOH D 55 355 402 HOH HOH . N 4 HOH D 56 356 416 HOH HOH . N 4 HOH D 57 357 234 HOH HOH . N 4 HOH D 58 358 185 HOH HOH . N 4 HOH D 59 359 247 HOH HOH . N 4 HOH D 60 360 9 HOH HOH . N 4 HOH D 61 361 170 HOH HOH . N 4 HOH D 62 362 178 HOH HOH . N 4 HOH D 63 363 46 HOH HOH . N 4 HOH D 64 364 26 HOH HOH . N 4 HOH D 65 365 154 HOH HOH . N 4 HOH D 66 366 17 HOH HOH . N 4 HOH D 67 367 110 HOH HOH . N 4 HOH D 68 368 360 HOH HOH . N 4 HOH D 69 369 443 HOH HOH . N 4 HOH D 70 370 196 HOH HOH . N 4 HOH D 71 371 460 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C CYN . . . F 3 0.461 28.788 15.137 1 22.98 ? C CYN 202 A 1 HETATM 2 N N CYN . . . F 3 0.336 27.489 15.395 1 24.38 ? N CYN 202 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 1331 _model_server_stats.encode_time_ms 24 _model_server_stats.element_count 2 #