data_7KC4 # _model_server_result.job_id dOKlybvw3n_kS7UfAwtCZA _model_server_result.datetime_utc '2025-03-01 03:44:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kc4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 7KC4 # _exptl.entry_id 7KC4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 256.424 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KC4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KC4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 5 ? 4 5 4 MAN MAN C1 O1 . O3 HO3 . sing 6 ? 4 6 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 A 1 NAG D 340 NAG 3 n C NAG 2 A 2 NAG D 408 NAG 4 n D NAG 1 C 1 NAG D 1002 NAG 4 n D NAG 2 C 2 NAG D 1003 NAG 4 n D BMA 3 C 3 BMA D 1004 BMA 4 n D MAN 4 C 4 MAN D 1005 MAN 4 n D MAN 5 C 5 MAN D 1007 MAN 4 n D MAN 6 C 6 MAN D 1006 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 D CYS 54 1_555 A SG CYS 65 D CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 104 D CYS 104 1_555 A SG CYS 112 D CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 114 D CYS 114 1_555 A SG CYS 132 D CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 180 D CYS 180 1_555 A SG CYS 194 D CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 182 D CYS 182 1_555 A SG CYS 189 D CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 259 D CYS 259 1_555 A SG CYS 297 D CYS 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 A SG CYS 275 D CYS 275 1_555 A SG CYS 290 D CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf8 A SG CYS 294 D CYS 294 1_555 A SG CYS 336 D CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 A SG CYS 312 D CYS 312 1_555 A SG CYS 327 D CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 A SG CYS 314 D CYS 314 1_555 A SG CYS 324 D CYS 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 A SG CYS 319 D CYS 319 1_555 A SG CYS 320 D CYS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf12 B SG CYS 50 B CYS 50 1_555 B SG CYS 71 B CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 B SG CYS 162 B CYS 162 1_555 B SG CYS 179 B CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 103 D ASN 103 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A OG SER 186 D SER 186 1_555 E C1 PLM . D PLM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? covale ? covale3 A ND2 ASN 262 D ASN 262 1_555 C C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 C O4 NAG . A NAG 1 1_555 C C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 D O4 NAG . C NAG 1 1_555 D C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale6 D O4 NAG . C NAG 2 1_555 D C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale7 D O3 BMA . C BMA 3 1_555 D C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale8 D O6 BMA . C BMA 3 1_555 D C1 MAN . C MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale9 D O3 MAN . C MAN 4 1_555 D C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 461 n n C1 O2 PLM doub 462 n n C1 C2 PLM sing 463 n n O1 H PLM sing 464 n n C2 C3 PLM sing 465 n n C2 H21 PLM sing 466 n n C2 H22 PLM sing 467 n n C3 C4 PLM sing 468 n n C3 H31 PLM sing 469 n n C3 H32 PLM sing 470 n n C4 C5 PLM sing 471 n n C4 H41 PLM sing 472 n n C4 H42 PLM sing 473 n n C5 C6 PLM sing 474 n n C5 H51 PLM sing 475 n n C5 H52 PLM sing 476 n n C6 C7 PLM sing 477 n n C6 H61 PLM sing 478 n n C6 H62 PLM sing 479 n n C7 C8 PLM sing 480 n n C7 H71 PLM sing 481 n n C7 H72 PLM sing 482 n n C8 C9 PLM sing 483 n n C8 H81 PLM sing 484 n n C8 H82 PLM sing 485 n n C9 CA PLM sing 486 n n C9 H91 PLM sing 487 n n C9 H92 PLM sing 488 n n CA CB PLM sing 489 n n CA HA1 PLM sing 490 n n CA HA2 PLM sing 491 n n CB CC PLM sing 492 n n CB HB1 PLM sing 493 n n CB HB2 PLM sing 494 n n CC CD PLM sing 495 n n CC HC1 PLM sing 496 n n CC HC2 PLM sing 497 n n CD CE PLM sing 498 n n CD HD1 PLM sing 499 n n CD HD2 PLM sing 500 n n CE CF PLM sing 501 n n CE HE1 PLM sing 502 n n CE HE2 PLM sing 503 n n CF CG PLM sing 504 n n CF HF1 PLM sing 505 n n CF HF2 PLM sing 506 n n CG HG1 PLM sing 507 n n CG HG2 PLM sing 508 n n CG HG3 PLM sing 509 n n # _atom_sites.entry_id 7KC4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 PLM D 1 1001 1001 PLM PAM . F 6 DR9 B 1 801 801 DR9 DR9 . G 6 DR9 B 1 802 901 DR9 DR9 . H 6 DR9 B 1 803 1001 DR9 DR9 . I 7 Y01 B 1 804 1501 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . E 5 50.628 39.652 54.482 1 28.9 ? C1 PLM 1001 D 1 HETATM 2 O O2 PLM . . . E 5 50.393 38.494 54.43 1 28.9 ? O2 PLM 1001 D 1 HETATM 3 C C2 PLM . . . E 5 50.692 40.482 53.201 1 28.9 ? C2 PLM 1001 D 1 HETATM 4 C C3 PLM . . . E 5 49.778 39.97 52.09 1 28.9 ? C3 PLM 1001 D 1 HETATM 5 C C4 PLM . . . E 5 50.412 38.873 51.241 1 28.9 ? C4 PLM 1001 D 1 HETATM 6 C C5 PLM . . . E 5 50.554 39.28 49.778 1 28.9 ? C5 PLM 1001 D 1 HETATM 7 C C6 PLM . . . E 5 49.481 38.651 48.896 1 28.9 ? C6 PLM 1001 D 1 HETATM 8 C C7 PLM . . . E 5 50.08 37.872 47.73 1 28.9 ? C7 PLM 1001 D 1 HETATM 9 C C8 PLM . . . E 5 49.891 38.593 46.402 1 28.9 ? C8 PLM 1001 D 1 HETATM 10 C C9 PLM . . . E 5 50.702 37.962 45.274 1 28.9 ? C9 PLM 1001 D 1 HETATM 11 C CA PLM . . . E 5 51.429 39.002 44.427 1 28.9 ? CA PLM 1001 D 1 HETATM 12 C CB PLM . . . E 5 51.09 38.888 42.944 1 28.9 ? CB PLM 1001 D 1 HETATM 13 C CC PLM . . . E 5 52.001 39.747 42.072 1 28.9 ? CC PLM 1001 D 1 HETATM 14 C CD PLM . . . E 5 53.357 39.091 41.83 1 28.9 ? CD PLM 1001 D 1 HETATM 15 C CE PLM . . . E 5 54.19 39.839 40.793 1 28.9 ? CE PLM 1001 D 1 HETATM 16 C CF PLM . . . E 5 55.408 39.037 40.344 1 28.9 ? CF PLM 1001 D 1 HETATM 17 C CG PLM . . . E 5 55.243 38.472 38.935 1 28.9 ? CG PLM 1001 D 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 17 #