data_7KC4 # _model_server_result.job_id -ZjmnROjatG5I3HREUF1Pg _model_server_result.datetime_utc '2025-03-01 03:32:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kc4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":804}' # _entry.id 7KC4 # _exptl.entry_id 7KC4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KC4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KC4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 5 ? 4 5 4 MAN MAN C1 O1 . O3 HO3 . sing 6 ? 4 6 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 A 1 NAG D 340 NAG 3 n C NAG 2 A 2 NAG D 408 NAG 4 n D NAG 1 C 1 NAG D 1002 NAG 4 n D NAG 2 C 2 NAG D 1003 NAG 4 n D BMA 3 C 3 BMA D 1004 BMA 4 n D MAN 4 C 4 MAN D 1005 MAN 4 n D MAN 5 C 5 MAN D 1007 MAN 4 n D MAN 6 C 6 MAN D 1006 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 54 D CYS 54 1_555 A SG CYS 65 D CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 104 D CYS 104 1_555 A SG CYS 112 D CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 114 D CYS 114 1_555 A SG CYS 132 D CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 A SG CYS 180 D CYS 180 1_555 A SG CYS 194 D CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf5 A SG CYS 182 D CYS 182 1_555 A SG CYS 189 D CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 259 D CYS 259 1_555 A SG CYS 297 D CYS 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 A SG CYS 275 D CYS 275 1_555 A SG CYS 290 D CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf8 A SG CYS 294 D CYS 294 1_555 A SG CYS 336 D CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf9 A SG CYS 312 D CYS 312 1_555 A SG CYS 327 D CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf10 A SG CYS 314 D CYS 314 1_555 A SG CYS 324 D CYS 324 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 A SG CYS 319 D CYS 319 1_555 A SG CYS 320 D CYS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf12 B SG CYS 50 B CYS 50 1_555 B SG CYS 71 B CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 B SG CYS 162 B CYS 162 1_555 B SG CYS 179 B CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 103 D ASN 103 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A OG SER 186 D SER 186 1_555 E C1 PLM . D PLM 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? covale ? covale3 A ND2 ASN 262 D ASN 262 1_555 C C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 C O4 NAG . A NAG 1 1_555 C C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale5 D O4 NAG . C NAG 1 1_555 D C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale6 D O4 NAG . C NAG 2 1_555 D C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale7 D O3 BMA . C BMA 3 1_555 D C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale8 D O6 BMA . C BMA 3 1_555 D C1 MAN . C MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale9 D O3 MAN . C MAN 4 1_555 D C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 626 n n CBA CAB Y01 sing 627 n n CBA CAN Y01 sing 628 n n CAN CAJ Y01 sing 629 n n CAJ CAO Y01 sing 630 n n CAO CBB Y01 sing 631 n n CBB CAC Y01 sing 632 n n CBB CBE Y01 sing 633 n n CBE CAP Y01 sing 634 n n CBE CBI Y01 sing 635 n n CAP CAQ Y01 sing 636 n n CAQ CBG Y01 sing 637 n n CBG CBI Y01 sing 638 n n CBG CBD Y01 sing 639 n n CBI CAE Y01 sing 640 n n CBI CAU Y01 sing 641 n n CAU CAS Y01 sing 642 n n CAS CBF Y01 sing 643 n n CBF CBD Y01 sing 644 n n CBF CBH Y01 sing 645 n n CBD CAK Y01 sing 646 n n CAK CAI Y01 sing 647 n n CAI CAZ Y01 doub 648 n n CAZ CAV Y01 sing 649 n n CAZ CBH Y01 sing 650 n n CAV CBC Y01 sing 651 n n CBH CAD Y01 sing 652 n n CBH CAT Y01 sing 653 n n CAT CAR Y01 sing 654 n n CAR CBC Y01 sing 655 n n CBC OAW Y01 sing 656 n n OAW CAY Y01 sing 657 n n CAY OAG Y01 doub 658 n n CAY CAM Y01 sing 659 n n CAM CAL Y01 sing 660 n n CAL CAX Y01 sing 661 n n CAX OAH Y01 sing 662 n n CAX OAF Y01 doub 663 n n CAA HAA1 Y01 sing 664 n n CAA HAA2 Y01 sing 665 n n CAA HAA3 Y01 sing 666 n n CBA HBA Y01 sing 667 n n CAB HAB1 Y01 sing 668 n n CAB HAB2 Y01 sing 669 n n CAB HAB3 Y01 sing 670 n n CAN HAN1 Y01 sing 671 n n CAN HAN2 Y01 sing 672 n n CAJ HAJ1 Y01 sing 673 n n CAJ HAJ2 Y01 sing 674 n n CAO HAO1 Y01 sing 675 n n CAO HAO2 Y01 sing 676 n n CBB HBB Y01 sing 677 n n CAC HAC1 Y01 sing 678 n n CAC HAC2 Y01 sing 679 n n CAC HAC3 Y01 sing 680 n n CBE HBE Y01 sing 681 n n CAP HAP1 Y01 sing 682 n n CAP HAP2 Y01 sing 683 n n CAQ HAQ1 Y01 sing 684 n n CAQ HAQ2 Y01 sing 685 n n CBG HBG Y01 sing 686 n n CBD HBD Y01 sing 687 n n CAE HAE1 Y01 sing 688 n n CAE HAE2 Y01 sing 689 n n CAE HAE3 Y01 sing 690 n n CAU HAU1 Y01 sing 691 n n CAU HAU2 Y01 sing 692 n n CAS HAS1 Y01 sing 693 n n CAS HAS2 Y01 sing 694 n n CBF HBF Y01 sing 695 n n CAK HAK1 Y01 sing 696 n n CAK HAK2 Y01 sing 697 n n CAI HAI Y01 sing 698 n n CAV HAV1 Y01 sing 699 n n CAV HAV2 Y01 sing 700 n n CBC HBC Y01 sing 701 n n CAD HAD1 Y01 sing 702 n n CAD HAD2 Y01 sing 703 n n CAD HAD3 Y01 sing 704 n n CAT HAT1 Y01 sing 705 n n CAT HAT2 Y01 sing 706 n n CAR HAR1 Y01 sing 707 n n CAR HAR2 Y01 sing 708 n n CAM HAM1 Y01 sing 709 n n CAM HAM2 Y01 sing 710 n n CAL HAL1 Y01 sing 711 n n CAL HAL2 Y01 sing 712 n n OAH HAH Y01 sing 713 n n # _atom_sites.entry_id 7KC4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 PLM D 1 1001 1001 PLM PAM . F 6 DR9 B 1 801 801 DR9 DR9 . G 6 DR9 B 1 802 901 DR9 DR9 . H 6 DR9 B 1 803 1001 DR9 DR9 . I 7 Y01 B 1 804 1501 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . I 7 39.437 46.077 39.961 1 29.96 ? CAA Y01 804 B 1 HETATM 2 C CBA Y01 . . . I 7 40.76 46.653 39.395 1 29.96 ? CBA Y01 804 B 1 HETATM 3 C CAB Y01 . . . I 7 40.746 48.198 39.519 1 29.96 ? CAB Y01 804 B 1 HETATM 4 C CAN Y01 . . . I 7 40.921 46.21 37.893 1 29.96 ? CAN Y01 804 B 1 HETATM 5 C CAJ Y01 . . . I 7 40.376 47.305 36.943 1 29.96 ? CAJ Y01 804 B 1 HETATM 6 C CAO Y01 . . . I 7 40.659 46.9 35.472 1 29.96 ? CAO Y01 804 B 1 HETATM 7 C CBB Y01 . . . I 7 40.724 48.205 34.525 1 29.96 ? CBB Y01 804 B 1 HETATM 8 C CAC Y01 . . . I 7 41.199 49.438 35.398 1 29.96 ? CAC Y01 804 B 1 HETATM 9 C CBE Y01 . . . I 7 41.588 47.992 33.473 1 29.96 ? CBE Y01 804 B 1 HETATM 10 C CAP Y01 . . . I 7 41.521 46.436 33.001 1 29.96 ? CAP Y01 804 B 1 HETATM 11 C CAQ Y01 . . . I 7 41.091 46.46 31.244 1 29.96 ? CAQ Y01 804 B 1 HETATM 12 C CBG Y01 . . . I 7 41.621 48.014 30.783 1 29.96 ? CBG Y01 804 B 1 HETATM 13 C CBI Y01 . . . I 7 41.201 48.952 32.087 1 29.96 ? CBI Y01 804 B 1 HETATM 14 C CAE Y01 . . . I 7 39.661 49.02 32.117 1 29.96 ? CAE Y01 804 B 1 HETATM 15 C CAU Y01 . . . I 7 41.601 50.121 31.984 1 29.96 ? CAU Y01 804 B 1 HETATM 16 C CAS Y01 . . . I 7 41.568 50.602 30.913 1 29.96 ? CAS Y01 804 B 1 HETATM 17 C CBF Y01 . . . I 7 42.01 49.639 29.742 1 29.96 ? CBF Y01 804 B 1 HETATM 18 C CBD Y01 . . . I 7 41.427 48.425 29.889 1 29.96 ? CBD Y01 804 B 1 HETATM 19 C CAK Y01 . . . I 7 41.698 47.636 28.932 1 29.96 ? CAK Y01 804 B 1 HETATM 20 C CAI Y01 . . . I 7 41.313 48.281 27.447 1 29.96 ? CAI Y01 804 B 1 HETATM 21 C CAZ Y01 . . . I 7 41.705 49.612 27.251 1 29.96 ? CAZ Y01 804 B 1 HETATM 22 C CAV Y01 . . . I 7 41.444 50.342 25.866 1 29.96 ? CAV Y01 804 B 1 HETATM 23 C CBH Y01 . . . I 7 41.616 50.39 28.256 1 29.96 ? CBH Y01 804 B 1 HETATM 24 C CAD Y01 . . . I 7 40.121 50.886 28.372 1 29.96 ? CAD Y01 804 B 1 HETATM 25 C CAT Y01 . . . I 7 42.593 51.711 28.067 1 29.96 ? CAT Y01 804 B 1 HETATM 26 C CAR Y01 . . . I 7 42.31 52.446 26.776 1 29.96 ? CAR Y01 804 B 1 HETATM 27 C CBC Y01 . . . I 7 42.315 51.639 25.672 1 29.96 ? CBC Y01 804 B 1 HETATM 28 O OAW Y01 . . . I 7 41.73 52.419 24.535 1 29.96 ? OAW Y01 804 B 1 HETATM 29 C CAY Y01 . . . I 7 42.268 52.086 23.228 1 29.96 ? CAY Y01 804 B 1 HETATM 30 O OAG Y01 . . . I 7 42.932 51.116 23.086 1 29.96 ? OAG Y01 804 B 1 HETATM 31 C CAM Y01 . . . I 7 41.966 53.014 22.008 1 29.96 ? CAM Y01 804 B 1 HETATM 32 C CAL Y01 . . . I 7 42.604 52.411 20.724 1 29.96 ? CAL Y01 804 B 1 HETATM 33 C CAX Y01 . . . I 7 42.987 53.556 19.765 1 29.96 ? CAX Y01 804 B 1 HETATM 34 O OAH Y01 . . . I 7 44.125 54.103 19.86 1 29.96 ? OAH Y01 804 B 1 HETATM 35 O OAF Y01 . . . I 7 42.159 53.956 18.876 1 29.96 ? OAF Y01 804 B 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 38 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 1274 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #