data_7KC7
#
_model_server_result.job_id            CFnEldjPQpIrx6dHVPMiIw 
_model_server_result.datetime_utc      '2025-02-18 16:52:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kc7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    7KC7 
#
_exptl.entry_id    7KC7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7KC7 
_cell.length_a            64.968 
_cell.length_b            120.489 
_cell.length_c            124.049 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KC7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     7KC7 
_atom_sites.fract_transf_matrix[1][1]    0.015392 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0083 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008061 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PO4 A 1 501 3 PO4 PO4 . 
D 3 ADP A 1 502 1002 ADP ADP . 
E 2 PO4 B 1 501 4 PO4 PO4 . 
F 4 HOH A 1 601 107 HOH HOH . 
F 4 HOH A 2 602 47 HOH HOH . 
F 4 HOH A 3 603 37 HOH HOH . 
F 4 HOH A 4 604 15 HOH HOH . 
F 4 HOH A 5 605 103 HOH HOH . 
F 4 HOH A 6 606 87 HOH HOH . 
F 4 HOH A 7 607 17 HOH HOH . 
F 4 HOH A 8 608 76 HOH HOH . 
F 4 HOH A 9 609 38 HOH HOH . 
F 4 HOH A 10 610 54 HOH HOH . 
F 4 HOH A 11 611 36 HOH HOH . 
F 4 HOH A 12 612 12 HOH HOH . 
F 4 HOH A 13 613 40 HOH HOH . 
F 4 HOH A 14 614 94 HOH HOH . 
F 4 HOH A 15 615 88 HOH HOH . 
F 4 HOH A 16 616 11 HOH HOH . 
F 4 HOH A 17 617 59 HOH HOH . 
F 4 HOH A 18 618 9 HOH HOH . 
F 4 HOH A 19 619 30 HOH HOH . 
F 4 HOH A 20 620 62 HOH HOH . 
F 4 HOH A 21 621 91 HOH HOH . 
F 4 HOH A 22 622 60 HOH HOH . 
F 4 HOH A 23 623 101 HOH HOH . 
F 4 HOH A 24 624 29 HOH HOH . 
F 4 HOH A 25 625 19 HOH HOH . 
F 4 HOH A 26 626 14 HOH HOH . 
F 4 HOH A 27 627 71 HOH HOH . 
F 4 HOH A 28 628 6 HOH HOH . 
F 4 HOH A 29 629 50 HOH HOH . 
F 4 HOH A 30 630 74 HOH HOH . 
F 4 HOH A 31 631 64 HOH HOH . 
F 4 HOH A 32 632 45 HOH HOH . 
F 4 HOH A 33 633 10 HOH HOH . 
F 4 HOH A 34 634 70 HOH HOH . 
F 4 HOH A 35 635 21 HOH HOH . 
F 4 HOH A 36 636 110 HOH HOH . 
F 4 HOH A 37 637 58 HOH HOH . 
F 4 HOH A 38 638 86 HOH HOH . 
F 4 HOH A 39 639 65 HOH HOH . 
F 4 HOH A 40 640 80 HOH HOH . 
F 4 HOH A 41 641 90 HOH HOH . 
F 4 HOH A 42 642 72 HOH HOH . 
F 4 HOH A 43 643 61 HOH HOH . 
F 4 HOH A 44 644 78 HOH HOH . 
F 4 HOH A 45 645 108 HOH HOH . 
F 4 HOH A 46 646 77 HOH HOH . 
F 4 HOH A 47 647 106 HOH HOH . 
F 4 HOH A 48 648 31 HOH HOH . 
F 4 HOH A 49 649 43 HOH HOH . 
F 4 HOH A 50 650 69 HOH HOH . 
F 4 HOH A 51 651 23 HOH HOH . 
F 4 HOH A 52 652 112 HOH HOH . 
F 4 HOH A 53 653 96 HOH HOH . 
F 4 HOH A 54 654 102 HOH HOH . 
F 4 HOH A 55 655 81 HOH HOH . 
F 4 HOH A 56 656 84 HOH HOH . 
F 4 HOH A 57 657 97 HOH HOH . 
G 4 HOH B 1 601 2 HOH HOH . 
G 4 HOH B 2 602 75 HOH HOH . 
G 4 HOH B 3 603 20 HOH HOH . 
G 4 HOH B 4 604 63 HOH HOH . 
G 4 HOH B 5 605 111 HOH HOH . 
G 4 HOH B 6 606 39 HOH HOH . 
G 4 HOH B 7 607 35 HOH HOH . 
G 4 HOH B 8 608 1 HOH HOH . 
G 4 HOH B 9 609 13 HOH HOH . 
G 4 HOH B 10 610 26 HOH HOH . 
G 4 HOH B 11 611 42 HOH HOH . 
G 4 HOH B 12 612 109 HOH HOH . 
G 4 HOH B 13 613 83 HOH HOH . 
G 4 HOH B 14 614 92 HOH HOH . 
G 4 HOH B 15 615 7 HOH HOH . 
G 4 HOH B 16 616 46 HOH HOH . 
G 4 HOH B 17 617 48 HOH HOH . 
G 4 HOH B 18 618 4 HOH HOH . 
G 4 HOH B 19 619 51 HOH HOH . 
G 4 HOH B 20 620 5 HOH HOH . 
G 4 HOH B 21 621 52 HOH HOH . 
G 4 HOH B 22 622 67 HOH HOH . 
G 4 HOH B 23 623 57 HOH HOH . 
G 4 HOH B 24 624 22 HOH HOH . 
G 4 HOH B 25 625 41 HOH HOH . 
G 4 HOH B 26 626 3 HOH HOH . 
G 4 HOH B 27 627 24 HOH HOH . 
G 4 HOH B 28 628 55 HOH HOH . 
G 4 HOH B 29 629 105 HOH HOH . 
G 4 HOH B 30 630 34 HOH HOH . 
G 4 HOH B 31 631 82 HOH HOH . 
G 4 HOH B 32 632 33 HOH HOH . 
G 4 HOH B 33 633 8 HOH HOH . 
G 4 HOH B 34 634 18 HOH HOH . 
G 4 HOH B 35 635 25 HOH HOH . 
G 4 HOH B 36 636 85 HOH HOH . 
G 4 HOH B 37 637 79 HOH HOH . 
G 4 HOH B 38 638 44 HOH HOH . 
G 4 HOH B 39 639 95 HOH HOH . 
G 4 HOH B 40 640 16 HOH HOH . 
G 4 HOH B 41 641 89 HOH HOH . 
G 4 HOH B 42 642 56 HOH HOH . 
G 4 HOH B 43 643 66 HOH HOH . 
G 4 HOH B 44 644 93 HOH HOH . 
G 4 HOH B 45 645 32 HOH HOH . 
G 4 HOH B 46 646 53 HOH HOH . 
G 4 HOH B 47 647 73 HOH HOH . 
G 4 HOH B 48 648 49 HOH HOH . 
G 4 HOH B 49 649 98 HOH HOH . 
G 4 HOH B 50 650 100 HOH HOH . 
G 4 HOH B 51 651 99 HOH HOH . 
G 4 HOH B 52 652 104 HOH HOH . 
G 4 HOH B 53 653 68 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N9 ADP . . . D 3 -32.018 -27.447 30.295 1 77.45 ? N9 ADP 502 A 1 
HETATM 2 C C8 ADP . . . D 3 -31.356 -26.94 31.37 1 74.51 ? C8 ADP 502 A 1 
HETATM 3 N N7 ADP . . . D 3 -32.117 -26.999 32.497 1 53.43 ? N7 ADP 502 A 1 
HETATM 4 C C5 ADP . . . D 3 -33.287 -27.554 32.111 1 58.25 ? C5 ADP 502 A 1 
HETATM 5 C C6 ADP . . . D 3 -34.529 -27.892 32.8 1 57.52 ? C6 ADP 502 A 1 
HETATM 6 N N6 ADP . . . D 3 -34.606 -27.621 34.111 1 58.67 ? N6 ADP 502 A 1 
HETATM 7 N N1 ADP . . . D 3 -35.528 -28.437 32.094 1 57.41 ? N1 ADP 502 A 1 
HETATM 8 C C2 ADP . . . D 3 -35.428 -28.689 30.775 1 55.96 ? C2 ADP 502 A 1 
HETATM 9 N N3 ADP . . . D 3 -34.321 -28.396 30.057 1 58.02 ? N3 ADP 502 A 1 
HETATM 10 C C4 ADP . . . D 3 -33.237 -27.85 30.674 1 63.32 ? C4 ADP 502 A 1 
HETATM 11 H H8 ADP . . . D 3 -30.35 -26.54 31.333 1 89.34 ? H8 ADP 502 A 1 
HETATM 12 H HN61 ADP . . . D 3 -33.83 -27.201 34.597 1 70.33 ? HN61 ADP 502 A 1 
HETATM 13 H HN62 ADP . . . D 3 -35.447 -27.84 34.601 1 70.33 ? HN62 ADP 502 A 1 
HETATM 14 H H2 ADP . . . D 3 -36.27 -29.144 30.268 1 67.08 ? H2 ADP 502 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           251 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           14 
#