data_7KCX # _model_server_result.job_id Rd5DrfcLHVeQLxpqX_sSBg _model_server_result.datetime_utc '2024-11-25 09:40:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7kcx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 7KCX # _exptl.entry_id 7KCX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7KCX _cell.length_a 50.08 _cell.length_b 82.7 _cell.length_c 103.86 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7KCX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 59 A SER 75 1_555 B C14 1S7 . A 1S7 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? metalc ? metalc1 A NE2 HIS 346 A HIS 362 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc2 A OD1 ASP 348 A ASP 364 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.651 ? metalc ? metalc3 A OD2 ASP 348 A ASP 364 1_555 E ZN ZN . A ZN 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc4 E ZN ZN . A ZN 404 1_555 F O HOH . A HOH 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc5 E ZN ZN . A ZN 404 1_555 F O HOH . A HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 157 n n C1 C2 GOL sing 158 n n C1 H11 GOL sing 159 n n C1 H12 GOL sing 160 n n O1 HO1 GOL sing 161 n n C2 O2 GOL sing 162 n n C2 C3 GOL sing 163 n n C2 H2 GOL sing 164 n n O2 HO2 GOL sing 165 n n C3 O3 GOL sing 166 n n C3 H31 GOL sing 167 n n C3 H32 GOL sing 168 n n O3 HO3 GOL sing 169 n n # _atom_sites.entry_id 7KCX _atom_sites.fract_transf_matrix[1][1] 0.019968 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012092 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1S7 A 1 401 401 1S7 FOX . C 3 GOL A 1 402 501 GOL GOL . D 3 GOL A 1 403 601 GOL GOL . E 4 ZN A 1 404 1 ZN ZN . F 5 HOH A 1 501 210 HOH HOH . F 5 HOH A 2 502 82 HOH HOH . F 5 HOH A 3 503 223 HOH HOH . F 5 HOH A 4 504 141 HOH HOH . F 5 HOH A 5 505 23 HOH HOH . F 5 HOH A 6 506 57 HOH HOH . F 5 HOH A 7 507 221 HOH HOH . F 5 HOH A 8 508 40 HOH HOH . F 5 HOH A 9 509 42 HOH HOH . F 5 HOH A 10 510 173 HOH HOH . F 5 HOH A 11 511 229 HOH HOH . F 5 HOH A 12 512 186 HOH HOH . F 5 HOH A 13 513 122 HOH HOH . F 5 HOH A 14 514 4 HOH HOH . F 5 HOH A 15 515 244 HOH HOH . F 5 HOH A 16 516 153 HOH HOH . F 5 HOH A 17 517 128 HOH HOH . F 5 HOH A 18 518 135 HOH HOH . F 5 HOH A 19 519 124 HOH HOH . F 5 HOH A 20 520 7 HOH HOH . F 5 HOH A 21 521 192 HOH HOH . F 5 HOH A 22 522 83 HOH HOH . F 5 HOH A 23 523 75 HOH HOH . F 5 HOH A 24 524 25 HOH HOH . F 5 HOH A 25 525 161 HOH HOH . F 5 HOH A 26 526 204 HOH HOH . F 5 HOH A 27 527 65 HOH HOH . F 5 HOH A 28 528 155 HOH HOH . F 5 HOH A 29 529 202 HOH HOH . F 5 HOH A 30 530 285 HOH HOH . F 5 HOH A 31 531 72 HOH HOH . F 5 HOH A 32 532 195 HOH HOH . F 5 HOH A 33 533 9 HOH HOH . F 5 HOH A 34 534 185 HOH HOH . F 5 HOH A 35 535 62 HOH HOH . F 5 HOH A 36 536 90 HOH HOH . F 5 HOH A 37 537 160 HOH HOH . F 5 HOH A 38 538 177 HOH HOH . F 5 HOH A 39 539 110 HOH HOH . F 5 HOH A 40 540 35 HOH HOH . F 5 HOH A 41 541 63 HOH HOH . F 5 HOH A 42 542 166 HOH HOH . F 5 HOH A 43 543 1 HOH HOH . F 5 HOH A 44 544 2 HOH HOH . F 5 HOH A 45 545 86 HOH HOH . F 5 HOH A 46 546 37 HOH HOH . F 5 HOH A 47 547 16 HOH HOH . F 5 HOH A 48 548 263 HOH HOH . F 5 HOH A 49 549 125 HOH HOH . F 5 HOH A 50 550 262 HOH HOH . F 5 HOH A 51 551 157 HOH HOH . F 5 HOH A 52 552 29 HOH HOH . F 5 HOH A 53 553 48 HOH HOH . F 5 HOH A 54 554 18 HOH HOH . F 5 HOH A 55 555 212 HOH HOH . F 5 HOH A 56 556 97 HOH HOH . F 5 HOH A 57 557 187 HOH HOH . F 5 HOH A 58 558 284 HOH HOH . F 5 HOH A 59 559 11 HOH HOH . F 5 HOH A 60 560 41 HOH HOH . F 5 HOH A 61 561 34 HOH HOH . F 5 HOH A 62 562 61 HOH HOH . F 5 HOH A 63 563 258 HOH HOH . F 5 HOH A 64 564 91 HOH HOH . F 5 HOH A 65 565 116 HOH HOH . F 5 HOH A 66 566 17 HOH HOH . F 5 HOH A 67 567 236 HOH HOH . F 5 HOH A 68 568 81 HOH HOH . F 5 HOH A 69 569 147 HOH HOH . F 5 HOH A 70 570 28 HOH HOH . F 5 HOH A 71 571 19 HOH HOH . F 5 HOH A 72 572 217 HOH HOH . F 5 HOH A 73 573 151 HOH HOH . F 5 HOH A 74 574 33 HOH HOH . F 5 HOH A 75 575 44 HOH HOH . F 5 HOH A 76 576 95 HOH HOH . F 5 HOH A 77 577 201 HOH HOH . F 5 HOH A 78 578 200 HOH HOH . F 5 HOH A 79 579 163 HOH HOH . F 5 HOH A 80 580 49 HOH HOH . F 5 HOH A 81 581 85 HOH HOH . F 5 HOH A 82 582 77 HOH HOH . F 5 HOH A 83 583 260 HOH HOH . F 5 HOH A 84 584 58 HOH HOH . F 5 HOH A 85 585 106 HOH HOH . F 5 HOH A 86 586 140 HOH HOH . F 5 HOH A 87 587 98 HOH HOH . F 5 HOH A 88 588 159 HOH HOH . F 5 HOH A 89 589 144 HOH HOH . F 5 HOH A 90 590 10 HOH HOH . F 5 HOH A 91 591 117 HOH HOH . F 5 HOH A 92 592 94 HOH HOH . F 5 HOH A 93 593 123 HOH HOH . F 5 HOH A 94 594 89 HOH HOH . F 5 HOH A 95 595 12 HOH HOH . F 5 HOH A 96 596 102 HOH HOH . F 5 HOH A 97 597 109 HOH HOH . F 5 HOH A 98 598 22 HOH HOH . F 5 HOH A 99 599 286 HOH HOH . F 5 HOH A 100 600 93 HOH HOH . F 5 HOH A 101 601 46 HOH HOH . F 5 HOH A 102 602 207 HOH HOH . F 5 HOH A 103 603 267 HOH HOH . F 5 HOH A 104 604 5 HOH HOH . F 5 HOH A 105 605 6 HOH HOH . F 5 HOH A 106 606 100 HOH HOH . F 5 HOH A 107 607 226 HOH HOH . F 5 HOH A 108 608 99 HOH HOH . F 5 HOH A 109 609 24 HOH HOH . F 5 HOH A 110 610 277 HOH HOH . F 5 HOH A 111 611 88 HOH HOH . F 5 HOH A 112 612 59 HOH HOH . F 5 HOH A 113 613 115 HOH HOH . F 5 HOH A 114 614 215 HOH HOH . F 5 HOH A 115 615 76 HOH HOH . F 5 HOH A 116 616 194 HOH HOH . F 5 HOH A 117 617 74 HOH HOH . F 5 HOH A 118 618 108 HOH HOH . F 5 HOH A 119 619 209 HOH HOH . F 5 HOH A 120 620 114 HOH HOH . F 5 HOH A 121 621 3 HOH HOH . F 5 HOH A 122 622 137 HOH HOH . F 5 HOH A 123 623 184 HOH HOH . F 5 HOH A 124 624 243 HOH HOH . F 5 HOH A 125 625 68 HOH HOH . F 5 HOH A 126 626 232 HOH HOH . F 5 HOH A 127 627 196 HOH HOH . F 5 HOH A 128 628 242 HOH HOH . F 5 HOH A 129 629 67 HOH HOH . F 5 HOH A 130 630 8 HOH HOH . F 5 HOH A 131 631 96 HOH HOH . F 5 HOH A 132 632 288 HOH HOH . F 5 HOH A 133 633 269 HOH HOH . F 5 HOH A 134 634 60 HOH HOH . F 5 HOH A 135 635 255 HOH HOH . F 5 HOH A 136 636 254 HOH HOH . F 5 HOH A 137 637 167 HOH HOH . F 5 HOH A 138 638 139 HOH HOH . F 5 HOH A 139 639 30 HOH HOH . F 5 HOH A 140 640 55 HOH HOH . F 5 HOH A 141 641 20 HOH HOH . F 5 HOH A 142 642 112 HOH HOH . F 5 HOH A 143 643 107 HOH HOH . F 5 HOH A 144 644 282 HOH HOH . F 5 HOH A 145 645 111 HOH HOH . F 5 HOH A 146 646 154 HOH HOH . F 5 HOH A 147 647 64 HOH HOH . F 5 HOH A 148 648 175 HOH HOH . F 5 HOH A 149 649 38 HOH HOH . F 5 HOH A 150 650 143 HOH HOH . F 5 HOH A 151 651 45 HOH HOH . F 5 HOH A 152 652 132 HOH HOH . F 5 HOH A 153 653 250 HOH HOH . F 5 HOH A 154 654 13 HOH HOH . F 5 HOH A 155 655 145 HOH HOH . F 5 HOH A 156 656 101 HOH HOH . F 5 HOH A 157 657 103 HOH HOH . F 5 HOH A 158 658 21 HOH HOH . F 5 HOH A 159 659 56 HOH HOH . F 5 HOH A 160 660 261 HOH HOH . F 5 HOH A 161 661 189 HOH HOH . F 5 HOH A 162 662 158 HOH HOH . F 5 HOH A 163 663 26 HOH HOH . F 5 HOH A 164 664 70 HOH HOH . F 5 HOH A 165 665 274 HOH HOH . F 5 HOH A 166 666 178 HOH HOH . F 5 HOH A 167 667 152 HOH HOH . F 5 HOH A 168 668 216 HOH HOH . F 5 HOH A 169 669 36 HOH HOH . F 5 HOH A 170 670 78 HOH HOH . F 5 HOH A 171 671 39 HOH HOH . F 5 HOH A 172 672 32 HOH HOH . F 5 HOH A 173 673 224 HOH HOH . F 5 HOH A 174 674 50 HOH HOH . F 5 HOH A 175 675 87 HOH HOH . F 5 HOH A 176 676 80 HOH HOH . F 5 HOH A 177 677 118 HOH HOH . F 5 HOH A 178 678 73 HOH HOH . F 5 HOH A 179 679 71 HOH HOH . F 5 HOH A 180 680 203 HOH HOH . F 5 HOH A 181 681 222 HOH HOH . F 5 HOH A 182 682 164 HOH HOH . F 5 HOH A 183 683 252 HOH HOH . F 5 HOH A 184 684 84 HOH HOH . F 5 HOH A 185 685 170 HOH HOH . F 5 HOH A 186 686 197 HOH HOH . F 5 HOH A 187 687 283 HOH HOH . F 5 HOH A 188 688 53 HOH HOH . F 5 HOH A 189 689 14 HOH HOH . F 5 HOH A 190 690 190 HOH HOH . F 5 HOH A 191 691 149 HOH HOH . F 5 HOH A 192 692 251 HOH HOH . F 5 HOH A 193 693 182 HOH HOH . F 5 HOH A 194 694 27 HOH HOH . F 5 HOH A 195 695 119 HOH HOH . F 5 HOH A 196 696 198 HOH HOH . F 5 HOH A 197 697 126 HOH HOH . F 5 HOH A 198 698 191 HOH HOH . F 5 HOH A 199 699 15 HOH HOH . F 5 HOH A 200 700 270 HOH HOH . F 5 HOH A 201 701 171 HOH HOH . F 5 HOH A 202 702 199 HOH HOH . F 5 HOH A 203 703 278 HOH HOH . F 5 HOH A 204 704 172 HOH HOH . F 5 HOH A 205 705 238 HOH HOH . F 5 HOH A 206 706 121 HOH HOH . F 5 HOH A 207 707 146 HOH HOH . F 5 HOH A 208 708 264 HOH HOH . F 5 HOH A 209 709 105 HOH HOH . F 5 HOH A 210 710 235 HOH HOH . F 5 HOH A 211 711 165 HOH HOH . F 5 HOH A 212 712 219 HOH HOH . F 5 HOH A 213 713 148 HOH HOH . F 5 HOH A 214 714 271 HOH HOH . F 5 HOH A 215 715 227 HOH HOH . F 5 HOH A 216 716 168 HOH HOH . F 5 HOH A 217 717 104 HOH HOH . F 5 HOH A 218 718 239 HOH HOH . F 5 HOH A 219 719 169 HOH HOH . F 5 HOH A 220 720 162 HOH HOH . F 5 HOH A 221 721 206 HOH HOH . F 5 HOH A 222 722 113 HOH HOH . F 5 HOH A 223 723 133 HOH HOH . F 5 HOH A 224 724 150 HOH HOH . F 5 HOH A 225 725 47 HOH HOH . F 5 HOH A 226 726 52 HOH HOH . F 5 HOH A 227 727 280 HOH HOH . F 5 HOH A 228 728 54 HOH HOH . F 5 HOH A 229 729 129 HOH HOH . F 5 HOH A 230 730 228 HOH HOH . F 5 HOH A 231 731 247 HOH HOH . F 5 HOH A 232 732 134 HOH HOH . F 5 HOH A 233 733 130 HOH HOH . F 5 HOH A 234 734 66 HOH HOH . F 5 HOH A 235 735 183 HOH HOH . F 5 HOH A 236 736 92 HOH HOH . F 5 HOH A 237 737 241 HOH HOH . F 5 HOH A 238 738 51 HOH HOH . F 5 HOH A 239 739 268 HOH HOH . F 5 HOH A 240 740 156 HOH HOH . F 5 HOH A 241 741 208 HOH HOH . F 5 HOH A 242 742 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 17.109 -18.262 12.048 1 62.67 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . D 3 16.379 -19.206 12.789 1 75.98 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . D 3 17.642 -19 10.803 1 60.76 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . D 3 16.674 -19.106 9.816 1 58.93 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . D 3 18.851 -18.175 10.32 1 60.18 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . D 3 19.028 -18.473 8.955 1 54.07 ? O3 GOL 403 A 1 HETATM 7 H H11 GOL . . . D 3 17.853 -17.888 12.545 1 75.23 ? H11 GOL 403 A 1 HETATM 8 H H12 GOL . . . D 3 16.569 -17.505 11.769 1 75.23 ? H12 GOL 403 A 1 HETATM 9 H HO1 GOL . . . D 3 15.918 -18.78 13.351 1 91.2 ? HO1 GOL 403 A 1 HETATM 10 H H2 GOL . . . D 3 17.907 -19.903 11.038 1 72.93 ? H2 GOL 403 A 1 HETATM 11 H HO2 GOL . . . D 3 16.426 -18.313 9.609 1 70.74 ? HO2 GOL 403 A 1 HETATM 12 H H31 GOL . . . D 3 19.621 -18.396 10.866 1 72.24 ? H31 GOL 403 A 1 HETATM 13 H H32 GOL . . . D 3 18.678 -17.235 10.49 1 72.24 ? H32 GOL 403 A 1 HETATM 14 H HO3 GOL . . . D 3 19.51 -17.859 8.624 1 64.91 ? HO3 GOL 403 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #