data_7KDF
#
_model_server_result.job_id            GPPCPSdGhT6nmDSnb4p_3A 
_model_server_result.datetime_utc      '2024-10-25 20:34:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7kdf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":502}' 
#
_entry.id    7KDF 
#
_exptl.entry_id    7KDF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7KDF 
_cell.length_a            170.886 
_cell.length_b            183.175 
_cell.length_c            124.317 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7KDF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    'C 2c 2' 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 F N N 
? 6 G N N 
? 6 H N N 
? 6 I N N 
? 6 J N N 
? 6 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 E C LYS 20 E LYS 875 1_555 E N MSE 21 E MSE 876 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale2 E C MSE 21 E MSE 876 1_555 E N LYS 22 E LYS 877 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 309 n n 
S O2 SO4 doub 310 n n 
S O3 SO4 sing 311 n n 
S O4 SO4 sing 312 n n 
#
_atom_sites.entry_id                     7KDF 
_atom_sites.fract_transf_matrix[1][1]    0.005852 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005459 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008044 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 SO4 A 1 701 12 SO4 SO4 . 
G 6 SO4 A 1 702 13 SO4 SO4 . 
H 6 SO4 B 1 501 1 SO4 SO4 . 
I 6 SO4 B 1 502 5 SO4 SO4 . 
J 6 SO4 B 1 503 11 SO4 SO4 . 
K 6 SO4 E 1 901 14 SO4 SO4 . 
L 7 HOH A 1 801 128 HOH HOH . 
L 7 HOH A 2 802 110 HOH HOH . 
L 7 HOH A 3 803 1 HOH HOH . 
L 7 HOH A 4 804 17 HOH HOH . 
L 7 HOH A 5 805 71 HOH HOH . 
L 7 HOH A 6 806 116 HOH HOH . 
L 7 HOH A 7 807 84 HOH HOH . 
L 7 HOH A 8 808 83 HOH HOH . 
L 7 HOH A 9 809 57 HOH HOH . 
L 7 HOH A 10 810 30 HOH HOH . 
L 7 HOH A 11 811 32 HOH HOH . 
L 7 HOH A 12 812 23 HOH HOH . 
L 7 HOH A 13 813 114 HOH HOH . 
L 7 HOH A 14 814 4 HOH HOH . 
L 7 HOH A 15 815 44 HOH HOH . 
L 7 HOH A 16 816 40 HOH HOH . 
L 7 HOH A 17 817 107 HOH HOH . 
L 7 HOH A 18 818 104 HOH HOH . 
L 7 HOH A 19 819 35 HOH HOH . 
L 7 HOH A 20 820 54 HOH HOH . 
L 7 HOH A 21 821 65 HOH HOH . 
L 7 HOH A 22 822 115 HOH HOH . 
L 7 HOH A 23 823 82 HOH HOH . 
L 7 HOH A 24 824 34 HOH HOH . 
L 7 HOH A 25 825 73 HOH HOH . 
L 7 HOH A 26 826 64 HOH HOH . 
L 7 HOH A 27 827 31 HOH HOH . 
L 7 HOH A 28 828 59 HOH HOH . 
L 7 HOH A 29 829 33 HOH HOH . 
L 7 HOH A 30 830 41 HOH HOH . 
L 7 HOH A 31 831 80 HOH HOH . 
M 7 HOH B 1 601 29 HOH HOH . 
M 7 HOH B 2 602 92 HOH HOH . 
M 7 HOH B 3 603 3 HOH HOH . 
M 7 HOH B 4 604 113 HOH HOH . 
M 7 HOH B 5 605 89 HOH HOH . 
M 7 HOH B 6 606 37 HOH HOH . 
M 7 HOH B 7 607 12 HOH HOH . 
M 7 HOH B 8 608 55 HOH HOH . 
M 7 HOH B 9 609 60 HOH HOH . 
M 7 HOH B 10 610 2 HOH HOH . 
M 7 HOH B 11 611 48 HOH HOH . 
M 7 HOH B 12 612 26 HOH HOH . 
M 7 HOH B 13 613 10 HOH HOH . 
M 7 HOH B 14 614 78 HOH HOH . 
M 7 HOH B 15 615 14 HOH HOH . 
M 7 HOH B 16 616 22 HOH HOH . 
M 7 HOH B 17 617 63 HOH HOH . 
M 7 HOH B 18 618 112 HOH HOH . 
M 7 HOH B 19 619 39 HOH HOH . 
M 7 HOH B 20 620 38 HOH HOH . 
M 7 HOH B 21 621 103 HOH HOH . 
M 7 HOH B 22 622 72 HOH HOH . 
M 7 HOH B 23 623 8 HOH HOH . 
M 7 HOH B 24 624 13 HOH HOH . 
M 7 HOH B 25 625 108 HOH HOH . 
M 7 HOH B 26 626 11 HOH HOH . 
M 7 HOH B 27 627 45 HOH HOH . 
M 7 HOH B 28 628 9 HOH HOH . 
M 7 HOH B 29 629 49 HOH HOH . 
M 7 HOH B 30 630 106 HOH HOH . 
M 7 HOH B 31 631 42 HOH HOH . 
M 7 HOH B 32 632 86 HOH HOH . 
M 7 HOH B 33 633 47 HOH HOH . 
M 7 HOH B 34 634 24 HOH HOH . 
M 7 HOH B 35 635 51 HOH HOH . 
M 7 HOH B 36 636 15 HOH HOH . 
M 7 HOH B 37 637 79 HOH HOH . 
M 7 HOH B 38 638 105 HOH HOH . 
M 7 HOH B 39 639 91 HOH HOH . 
M 7 HOH B 40 640 87 HOH HOH . 
M 7 HOH B 41 641 61 HOH HOH . 
M 7 HOH B 42 642 90 HOH HOH . 
M 7 HOH B 43 643 85 HOH HOH . 
M 7 HOH B 44 644 109 HOH HOH . 
M 7 HOH B 45 645 124 HOH HOH . 
M 7 HOH B 46 646 97 HOH HOH . 
M 7 HOH B 47 647 125 HOH HOH . 
M 7 HOH B 48 648 88 HOH HOH . 
M 7 HOH B 49 649 58 HOH HOH . 
M 7 HOH B 50 650 93 HOH HOH . 
N 7 HOH C 1 301 99 HOH HOH . 
N 7 HOH C 2 302 7 HOH HOH . 
N 7 HOH C 3 303 117 HOH HOH . 
N 7 HOH C 4 304 119 HOH HOH . 
N 7 HOH C 5 305 111 HOH HOH . 
N 7 HOH C 6 306 123 HOH HOH . 
N 7 HOH C 7 307 120 HOH HOH . 
N 7 HOH C 8 308 118 HOH HOH . 
O 7 HOH D 1 301 81 HOH HOH . 
P 7 HOH E 1 1001 67 HOH HOH . 
P 7 HOH E 2 1002 129 HOH HOH . 
P 7 HOH E 3 1003 126 HOH HOH . 
P 7 HOH E 4 1004 96 HOH HOH . 
P 7 HOH E 5 1005 127 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . I 6 -13.819 -91.744 -62.121 0.41 43.14 ? S SO4 502 B 1 
HETATM 2 O O1 SO4 . . . I 6 -12.837 -92.284 -63.059 0.41 48.55 ? O1 SO4 502 B 1 
HETATM 3 O O2 SO4 . . . I 6 -14.615 -90.727 -62.804 0.41 46.35 ? O2 SO4 502 B 1 
HETATM 4 O O3 SO4 . . . I 6 -14.676 -92.828 -61.652 0.41 46.57 -1 O3 SO4 502 B 1 
HETATM 5 O O4 SO4 . . . I 6 -13.142 -91.138 -60.975 0.41 47.26 ? O4 SO4 502 B 1 
#
_model_server_stats.io_time_ms              119 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           5 
#